Wall clock time and date at job start Mon Mar 30 2020 02:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46896 * 109.47590 * 2 1 4 4 C 1.48535 * 110.99840 * 287.40010 * 3 2 1 5 5 C 1.55104 * 103.28352 * 200.32832 * 4 3 2 6 6 C 1.54596 * 102.84273 * 37.30416 * 5 4 3 7 7 H 1.09000 * 110.31008 * 97.11641 * 6 5 4 8 8 C 1.53005 * 110.31037 * 219.18724 * 6 5 4 9 9 C 1.50704 * 109.46817 * 292.21070 * 8 6 5 10 10 C 1.35036 * 120.00077 * 126.11104 * 9 8 6 11 11 C 1.40070 * 119.99715 * 6.19253 * 10 9 8 12 12 H 1.07998 * 120.00309 * 355.14448 * 11 10 9 13 13 C 1.40307 * 119.99711 * 175.42666 * 11 10 9 14 14 N 1.30688 * 119.99890 * 179.72483 * 13 11 10 15 15 Si 1.86801 * 120.00210 * 359.72084 * 13 11 10 16 16 H 1.48499 * 109.47049 * 90.00030 * 15 13 11 17 17 H 1.48497 * 109.47425 * 210.00348 * 15 13 11 18 18 H 1.48503 * 109.47070 * 329.99920 * 15 13 11 19 19 C 1.47894 * 111.00326 * 170.00013 * 3 2 1 20 20 H 1.09003 * 109.46890 * 299.99952 * 1 2 3 21 21 H 1.09000 * 109.46939 * 60.00051 * 1 2 3 22 22 H 1.08994 * 109.47182 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46890 * 240.00048 * 2 1 3 24 24 H 1.09000 * 109.47173 * 120.00448 * 2 1 3 25 25 H 1.08998 * 110.66608 * 318.70647 * 4 3 2 26 26 H 1.09000 * 110.67183 * 81.67105 * 4 3 2 27 27 H 1.08995 * 110.70896 * 278.99690 * 5 4 3 28 28 H 1.08996 * 110.81252 * 155.65659 * 5 4 3 29 29 H 1.08998 * 109.47618 * 172.21289 * 8 6 5 30 30 H 1.08999 * 109.47067 * 52.20386 * 8 6 5 31 31 H 1.08000 * 120.00085 * 306.11536 * 9 8 6 32 32 H 1.07995 * 120.00066 * 186.19042 * 10 9 8 33 33 H 0.97004 * 119.99959 * 180.02562 * 14 13 11 34 34 H 1.09002 * 109.91503 * 26.49064 * 19 3 2 35 35 H 1.09003 * 109.92042 * 265.19743 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8063 2.0250 -1.3232 5 6 2.8105 3.2070 -1.3135 6 6 4.0330 2.6133 -0.5768 7 1 4.7739 2.2622 -1.2952 8 6 4.6511 3.6583 0.3543 9 6 5.2657 4.7622 -0.4673 10 6 4.9173 6.0469 -0.2404 11 6 4.0859 6.3665 0.8407 12 1 3.6601 5.5797 1.4456 13 6 3.8015 7.7088 1.1340 14 7 3.0215 8.0069 2.1393 15 14 4.5379 9.0698 0.0877 16 1 3.6205 9.3802 -1.0380 17 1 4.7297 10.2850 0.9194 18 1 5.8491 8.6263 -0.4502 19 6 3.4784 1.4313 0.2397 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 2.0406 1.3296 -2.1292 26 1 0.7823 2.3871 -1.4148 27 1 2.4027 4.0547 -0.7629 28 1 3.0764 3.4977 -2.3298 29 1 5.4212 3.1893 0.9667 30 1 3.8767 4.0736 0.9992 31 1 5.9849 4.5257 -1.2376 32 1 5.2796 6.8279 -0.8923 33 1 2.8246 8.9349 2.3419 34 1 3.9392 0.5013 -0.0932 35 1 3.6757 1.5877 1.3003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260470141.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:39 Heat of formation + Delta-G solvation = -3.686726 kcal Electronic energy + Delta-G solvation = -13776.854245 eV Core-core repulsion = 11581.118840 eV Total energy + Delta-G solvation = -2195.735405 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.74817 -34.94867 -33.40071 -31.71779 -29.21736 -28.75838 -25.80292 -23.32557 -22.58684 -20.41021 -19.49661 -18.50020 -16.76273 -15.66674 -15.06551 -14.55215 -14.19183 -13.77387 -13.22925 -12.82706 -12.73653 -12.55636 -12.21413 -11.63353 -11.42243 -11.27882 -11.03671 -10.93321 -10.66824 -10.43325 -10.16344 -10.09518 -10.02097 -9.49499 -9.28410 -8.79992 -8.10721 -7.68635 -6.69681 -4.15590 3.01954 3.15033 3.20427 3.79333 4.03870 4.28881 5.03908 5.19987 5.26295 5.44165 5.48071 5.56947 5.63294 5.68829 5.80732 5.96344 6.04365 6.10973 6.21254 6.32520 6.39832 6.53782 6.72408 6.80920 6.95018 7.08470 7.15183 7.28797 7.37096 7.38233 7.66415 7.91864 8.53037 8.65018 9.06637 9.24931 10.34797 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.044614 B = 0.006843 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.448427 B = 4090.861248 C = 4331.332542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.042 3.958 3 N -0.517 5.517 4 C 0.033 3.967 5 C -0.107 4.107 6 C -0.088 4.088 7 H 0.057 0.943 8 C -0.033 4.033 9 C -0.402 4.402 10 C 0.007 3.993 11 C -0.449 4.449 12 H 0.092 0.908 13 C 0.075 3.925 14 N -0.827 5.827 15 Si 0.900 3.100 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.256 1.256 19 C 0.039 3.961 20 H 0.063 0.937 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.029 0.971 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.280 0.720 34 H 0.032 0.968 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.582 -9.868 -4.931 11.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 N -0.241 5.241 4 C -0.094 4.094 5 C -0.145 4.145 6 C -0.107 4.107 7 H 0.076 0.924 8 C -0.070 4.070 9 C -0.425 4.425 10 C -0.013 4.013 11 C -0.479 4.479 12 H 0.110 0.890 13 C -0.140 4.140 14 N -0.454 5.454 15 Si 0.725 3.275 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.180 1.180 19 C -0.089 4.089 20 H 0.082 0.918 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.047 0.953 24 H 0.087 0.913 25 H 0.052 0.948 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.024 -9.423 -4.322 10.799 hybrid contribution 0.739 0.205 -1.106 1.346 sum -2.285 -9.218 -5.428 10.939 Atomic orbital electron populations 1.21730 0.95084 1.00876 1.02585 1.22220 0.96198 0.90063 1.00184 1.64739 1.14712 1.15472 1.29187 1.23323 1.00374 0.96398 0.89347 1.22468 0.94300 0.97340 1.00346 1.22030 0.96556 0.94796 0.97350 0.92424 1.20111 0.97866 0.93449 0.95605 1.21763 1.15291 0.93479 1.11929 1.19947 0.93454 0.94286 0.93642 1.19679 1.24702 0.92683 1.10848 0.89036 1.26312 0.92896 1.00437 0.94389 1.69594 1.29587 1.20871 1.25335 0.86420 0.81072 0.79570 0.80420 1.19303 1.20732 1.17996 1.23010 0.87015 0.97430 1.01397 0.91819 0.92855 0.92847 0.95300 0.91279 0.94784 0.90696 0.89720 0.91873 0.95692 0.91059 0.91921 0.92122 0.90992 0.94993 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.00 37.16 0.37 -1.30 16 2 C 0.04 0.55 5.42 -3.82 -0.02 0.53 16 3 N -0.52 -8.37 5.25 -230.35 -1.21 -9.58 16 4 C 0.03 0.52 5.91 -1.81 -0.01 0.51 16 5 C -0.11 -1.95 6.20 -24.78 -0.15 -2.10 16 6 C -0.09 -1.65 2.99 -89.26 -0.27 -1.91 16 7 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 8 C -0.03 -0.74 4.61 -27.88 -0.13 -0.87 16 9 C -0.40 -9.75 9.26 -35.44 -0.33 -10.08 16 10 C 0.01 0.18 8.88 -40.03 -0.36 -0.17 16 11 C -0.45 -12.48 9.22 -38.12 -0.35 -12.83 16 12 H 0.09 2.72 5.72 -52.49 -0.30 2.42 16 13 C 0.08 2.02 5.52 -17.26 -0.10 1.93 16 14 N -0.83 -22.91 13.92 55.57 0.77 -22.14 16 15 Si 0.90 20.21 27.41 -169.99 -4.66 15.55 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.26 -5.69 6.46 56.52 0.36 -5.33 16 19 C 0.04 0.65 6.32 -2.76 -0.02 0.64 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.05 0.61 7.37 -51.93 -0.38 0.23 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.03 0.36 7.83 -51.93 -0.41 -0.05 16 24 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 25 H 0.03 0.49 7.81 -51.93 -0.41 0.09 16 26 H 0.07 1.12 7.80 -51.93 -0.40 0.72 16 27 H 0.08 1.79 7.79 -51.93 -0.40 1.39 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.75 5.27 -51.93 -0.27 1.48 16 31 H 0.06 1.47 8.06 -52.49 -0.42 1.04 16 32 H 0.06 1.51 5.34 -52.49 -0.28 1.23 16 33 H 0.28 7.04 8.29 -40.82 -0.34 6.70 16 34 H 0.03 0.48 7.77 -51.93 -0.40 0.08 16 35 H 0.08 1.35 7.68 -51.93 -0.40 0.95 16 LS Contribution 277.11 15.07 4.18 4.18 Total: -1.00 -27.54 277.11 -8.06 -35.60 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.79 Total: 2.04 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -1.36 Total: -25.65 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: -0.43 Total: -31.72 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.66 Total: 15.55 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.54 -8.06 -35.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260470141.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.918 kcal (2) G-P(sol) polarization free energy of solvation -27.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds