Wall clock time and date at job start Mon Mar 30 2020 02:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46896 * 109.47590 * 2 1 4 4 C 1.48535 * 110.99840 * 287.40010 * 3 2 1 5 5 C 1.55104 * 103.28352 * 200.32832 * 4 3 2 6 6 C 1.54596 * 102.84273 * 37.30416 * 5 4 3 7 7 H 1.09000 * 110.31008 * 97.11641 * 6 5 4 8 8 C 1.53005 * 110.31037 * 219.18724 * 6 5 4 9 9 C 1.50704 * 109.46817 * 292.21070 * 8 6 5 10 10 C 1.35036 * 120.00077 * 126.11104 * 9 8 6 11 11 C 1.40070 * 119.99715 * 6.19253 * 10 9 8 12 12 H 1.07998 * 120.00309 * 355.14448 * 11 10 9 13 13 C 1.40307 * 119.99711 * 175.42666 * 11 10 9 14 14 N 1.30688 * 119.99890 * 179.72483 * 13 11 10 15 15 Si 1.86801 * 120.00210 * 359.72084 * 13 11 10 16 16 H 1.48499 * 109.47049 * 90.00030 * 15 13 11 17 17 H 1.48497 * 109.47425 * 210.00348 * 15 13 11 18 18 H 1.48503 * 109.47070 * 329.99920 * 15 13 11 19 19 C 1.47894 * 111.00326 * 170.00013 * 3 2 1 20 20 H 1.09003 * 109.46890 * 299.99952 * 1 2 3 21 21 H 1.09000 * 109.46939 * 60.00051 * 1 2 3 22 22 H 1.08994 * 109.47182 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46890 * 240.00048 * 2 1 3 24 24 H 1.09000 * 109.47173 * 120.00448 * 2 1 3 25 25 H 1.08998 * 110.66608 * 318.70647 * 4 3 2 26 26 H 1.09000 * 110.67183 * 81.67105 * 4 3 2 27 27 H 1.08995 * 110.70896 * 278.99690 * 5 4 3 28 28 H 1.08996 * 110.81252 * 155.65659 * 5 4 3 29 29 H 1.08998 * 109.47618 * 172.21289 * 8 6 5 30 30 H 1.08999 * 109.47067 * 52.20386 * 8 6 5 31 31 H 1.08000 * 120.00085 * 306.11536 * 9 8 6 32 32 H 1.07995 * 120.00066 * 186.19042 * 10 9 8 33 33 H 0.97004 * 119.99959 * 180.02562 * 14 13 11 34 34 H 1.09002 * 109.91503 * 26.49064 * 19 3 2 35 35 H 1.09003 * 109.92042 * 265.19743 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8063 2.0250 -1.3232 5 6 2.8105 3.2070 -1.3135 6 6 4.0330 2.6133 -0.5768 7 1 4.7739 2.2622 -1.2952 8 6 4.6511 3.6583 0.3543 9 6 5.2657 4.7622 -0.4673 10 6 4.9173 6.0469 -0.2404 11 6 4.0859 6.3665 0.8407 12 1 3.6601 5.5797 1.4456 13 6 3.8015 7.7088 1.1340 14 7 3.0215 8.0069 2.1393 15 14 4.5379 9.0698 0.0877 16 1 3.6205 9.3802 -1.0380 17 1 4.7297 10.2850 0.9194 18 1 5.8491 8.6263 -0.4502 19 6 3.4784 1.4313 0.2397 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 2.0406 1.3296 -2.1292 26 1 0.7823 2.3871 -1.4148 27 1 2.4027 4.0547 -0.7629 28 1 3.0764 3.4977 -2.3298 29 1 5.4212 3.1893 0.9667 30 1 3.8767 4.0736 0.9992 31 1 5.9849 4.5257 -1.2376 32 1 5.2796 6.8279 -0.8923 33 1 2.8246 8.9349 2.3419 34 1 3.9392 0.5013 -0.0932 35 1 3.6757 1.5877 1.3003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260470141.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:39 Heat of formation + Delta-G solvation = -20.257383 kcal Electronic energy + Delta-G solvation = -13777.572803 eV Core-core repulsion = 11581.118840 eV Total energy + Delta-G solvation = -2196.453962 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.09361 -36.74521 -35.08307 -33.41815 -30.75176 -30.03000 -27.57621 -25.14922 -23.75874 -21.63107 -21.03331 -20.52899 -18.69706 -16.96723 -16.58034 -16.01409 -15.72391 -15.46449 -14.64340 -14.64048 -14.14509 -13.94725 -13.37836 -13.21964 -13.08396 -12.87026 -12.38022 -12.27739 -12.16790 -11.95038 -11.76428 -11.66864 -11.65027 -11.33636 -11.07114 -10.77350 -9.72016 -9.30293 -8.71715 -6.26178 1.22426 1.32125 1.46269 1.84659 2.17342 3.10823 3.36316 3.81141 3.90076 4.05134 4.24675 4.38266 4.42077 4.55956 4.61942 4.67451 4.70225 4.87913 4.94296 4.97809 5.03743 5.11494 5.14979 5.23505 5.28853 5.37883 5.43807 5.51797 5.70691 5.91005 6.04004 6.23480 6.43222 6.53564 6.99992 7.19571 8.37237 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.044614 B = 0.006843 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.448427 B = 4090.861248 C = 4331.332542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.040 3.960 3 N -0.540 5.540 4 C 0.043 3.957 5 C -0.108 4.108 6 C -0.084 4.084 7 H 0.073 0.927 8 C -0.034 4.034 9 C -0.385 4.385 10 C -0.012 4.012 11 C -0.477 4.477 12 H 0.053 0.947 13 C 0.027 3.973 14 N -0.870 5.870 15 Si 0.969 3.031 16 H -0.256 1.256 17 H -0.268 1.268 18 H -0.250 1.250 19 C 0.045 3.955 20 H 0.050 0.950 21 H 0.052 0.948 22 H 0.077 0.923 23 H 0.043 0.957 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.030 0.970 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.289 0.711 34 H 0.056 0.944 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.039 -10.773 -6.777 12.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 N -0.265 5.265 4 C -0.084 4.084 5 C -0.146 4.146 6 C -0.103 4.103 7 H 0.091 0.909 8 C -0.071 4.071 9 C -0.407 4.407 10 C -0.032 4.032 11 C -0.507 4.507 12 H 0.071 0.929 13 C -0.184 4.184 14 N -0.498 5.498 15 Si 0.790 3.210 16 H -0.181 1.181 17 H -0.193 1.193 18 H -0.174 1.174 19 C -0.083 4.083 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.096 0.904 23 H 0.061 0.939 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.487 -10.350 -6.165 12.301 hybrid contribution 0.579 0.346 -0.504 0.842 sum -1.908 -10.004 -6.669 12.174 Atomic orbital electron populations 1.21712 0.94021 1.02276 1.01904 1.22320 0.97061 0.88286 1.01100 1.64712 1.14298 1.17825 1.29713 1.23238 0.99748 0.95516 0.89909 1.22393 0.94997 0.97200 1.00018 1.21930 0.96861 0.94494 0.97026 0.90909 1.20074 0.97082 0.94058 0.95864 1.22186 1.13845 0.93561 1.11080 1.20054 0.94014 0.95406 0.93737 1.19663 1.26410 0.92792 1.11853 0.92915 1.27182 0.93088 1.02590 0.95578 1.69660 1.31097 1.22050 1.27033 0.85379 0.80354 0.76428 0.78879 1.18076 1.19254 1.17371 1.22879 0.87739 0.97422 1.00258 0.93127 0.92917 0.90416 0.93910 0.90709 0.92521 0.90265 0.93750 0.90983 0.95192 0.94479 0.90224 0.90657 0.90111 0.92541 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 10.00 71.98 0.72 -2.23 16 2 C 0.04 0.95 5.42 86.30 0.47 1.42 16 3 N -0.54 -16.79 5.25 -882.68 -4.63 -21.43 16 4 C 0.04 1.29 5.91 86.71 0.51 1.80 16 5 C -0.11 -3.91 6.20 31.86 0.20 -3.71 16 6 C -0.08 -3.05 2.99 -9.91 -0.03 -3.08 16 7 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 8 C -0.03 -1.51 4.61 29.85 0.14 -1.37 16 9 C -0.38 -18.47 9.26 24.95 0.23 -18.24 16 10 C -0.01 -0.63 8.88 21.98 0.20 -0.43 16 11 C -0.48 -27.54 9.22 23.22 0.21 -27.33 16 12 H 0.05 3.37 5.72 -2.91 -0.02 3.35 16 13 C 0.03 1.48 5.52 85.37 0.47 1.95 16 14 N -0.87 -49.71 13.92 21.89 0.30 -49.40 16 15 Si 0.97 41.32 27.41 68.60 1.88 43.20 16 16 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 17 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 18 H -0.25 -10.32 6.46 99.48 0.64 -9.67 16 19 C 0.04 1.43 6.32 86.45 0.55 1.98 16 20 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.05 1.10 7.37 -2.39 -0.02 1.08 16 22 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.04 0.91 7.83 -2.39 -0.02 0.89 16 24 H 0.07 1.68 8.08 -2.39 -0.02 1.66 16 25 H 0.06 1.44 7.81 -2.39 -0.02 1.43 16 26 H 0.08 2.27 7.80 -2.39 -0.02 2.25 16 27 H 0.04 1.95 7.79 -2.39 -0.02 1.93 16 28 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.04 1.93 5.27 -2.39 -0.01 1.92 16 31 H 0.08 3.55 8.06 -2.91 -0.02 3.53 16 32 H 0.08 3.65 5.34 -2.91 -0.02 3.63 16 33 H 0.29 14.82 8.29 -92.71 -0.77 14.05 16 34 H 0.06 1.53 7.77 -2.39 -0.02 1.52 16 35 H 0.06 2.20 7.68 -2.39 -0.02 2.18 16 Total: -1.00 -60.56 277.11 2.19 -58.37 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.97 Total: 18.51 kcal Atomic # 6 Polarization: -52.91 SS G_CDS: 3.67 Total: -49.25 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -4.33 Total: -70.83 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.88 Total: 43.20 kcal Total: -60.56 2.19 -58.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260470141.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.111 kcal (2) G-P(sol) polarization free energy of solvation -60.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds