Wall clock time and date at job start Mon Mar 30 2020 03:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30927 * 1 3 3 Si 1.86807 * 120.00023 * 2 1 4 4 H 1.48496 * 109.47260 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46998 * 120.00357 * 3 2 1 6 6 H 1.48499 * 109.46713 * 240.00046 * 3 2 1 7 7 C 1.39979 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00024 * 354.83600 * 7 2 1 9 9 C 1.39915 * 120.00204 * 174.82975 * 7 2 1 10 10 C 1.37040 * 124.98440 * 190.20814 * 9 7 2 11 11 C 1.40050 * 113.58060 * 179.84162 * 10 9 7 12 12 C 1.38722 * 113.49752 * 0.44565 * 11 10 9 13 13 S 1.71547 * 110.56802 * 359.75742 * 12 11 10 14 14 O 1.35998 * 111.20717 * 179.75487 * 12 11 10 15 15 C 1.42636 * 109.53837 * 0.02562 * 14 12 11 16 16 C 1.43513 * 137.92233 * 180.10487 * 11 10 9 17 17 O 1.21408 * 127.42424 * 0.32534 * 16 11 10 18 18 H 0.96993 * 120.00045 * 179.61973 * 1 2 3 19 19 H 1.08000 * 123.20935 * 0.02562 * 10 9 7 20 20 H 1.09005 * 110.23656 * 119.01169 * 15 14 12 21 21 H 1.08998 * 110.23603 * 240.98167 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6178 0.0000 4 1 1.2784 2.7465 -0.0006 5 1 3.0971 1.6964 1.2125 6 1 3.0970 1.6964 -1.2125 7 6 2.0092 -1.2122 0.0005 8 1 1.4725 -2.1457 0.0851 9 6 3.4041 -1.2148 -0.1086 10 6 4.1738 -2.3291 -0.3179 11 6 5.5455 -2.0567 -0.3920 12 6 5.8523 -0.7137 -0.2290 13 16 4.4241 0.2061 0.0098 14 8 7.1937 -0.5028 -0.3039 15 6 7.8599 -1.7439 -0.5288 16 6 6.7670 -2.7842 -0.5881 17 8 6.8941 -3.9787 -0.7641 18 1 -0.4850 -0.8400 -0.0056 19 1 3.7617 -3.3223 -0.4190 20 1 8.4043 -1.7139 -1.4727 21 1 8.5416 -1.9603 0.2937 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260472786.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:24 Heat of formation + Delta-G solvation = -67.614515 kcal Electronic energy + Delta-G solvation = -11295.523443 eV Core-core repulsion = 9034.550847 eV Total energy + Delta-G solvation = -2260.972596 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 210.014 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.10792 -39.01004 -37.33031 -35.37903 -31.40938 -30.00089 -26.78605 -24.30864 -21.94456 -20.76001 -20.37225 -18.80612 -17.55481 -17.04533 -16.44254 -15.97393 -15.62862 -15.13740 -14.83460 -14.53102 -14.29596 -14.07578 -13.05870 -12.84978 -12.48283 -11.93010 -11.78372 -11.45802 -11.11302 -10.59270 -9.58643 -9.46513 -9.08326 -6.56523 -0.17680 0.10094 0.78649 1.02227 1.32283 1.45166 1.62359 2.14532 2.16305 2.75082 2.92008 3.13832 3.87720 4.24283 4.35430 4.49810 5.07681 5.20901 5.25929 5.47101 5.66717 5.95140 6.03362 6.42170 6.54234 7.82021 Molecular weight = 210.01amu Principal moments of inertia in cm(-1) A = 0.057142 B = 0.012034 C = 0.010017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.890897 B = 2326.276655 C = 2794.707692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.018 3.982 3 Si 0.915 3.085 4 H -0.187 1.187 5 H -0.170 1.170 6 H -0.174 1.174 7 C -0.483 4.483 8 H 0.063 0.937 9 C -0.010 4.010 10 C -0.299 4.299 11 C -0.275 4.275 12 C -0.096 4.096 13 S 0.191 5.809 14 O -0.261 6.261 15 C 0.010 3.990 16 C 0.385 3.615 17 O -0.496 6.496 18 H 0.282 0.718 19 H 0.096 0.904 20 H 0.156 0.844 21 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.262 6.205 0.132 11.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.199 4.199 3 Si 0.732 3.268 4 H -0.109 1.109 5 H -0.097 1.097 6 H -0.100 1.100 7 C -0.519 4.519 8 H 0.082 0.918 9 C -0.127 4.127 10 C -0.323 4.323 11 C -0.288 4.288 12 C -0.256 4.256 13 S 0.447 5.553 14 O -0.175 6.175 15 C -0.067 4.067 16 C 0.269 3.731 17 O -0.379 6.379 18 H 0.093 0.907 19 H 0.114 0.886 20 H 0.173 0.827 21 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.907 8.860 0.283 12.566 hybrid contribution -0.284 -4.218 -0.252 4.235 sum 8.623 4.641 0.031 9.793 Atomic orbital electron populations 1.70643 1.08109 1.32544 1.33217 1.28417 0.96114 1.05906 0.89503 0.84745 0.80822 0.75096 0.86163 1.10909 1.09700 1.09973 1.20040 0.90403 0.96584 1.44841 0.91840 1.21471 0.96707 0.93967 1.00554 1.19217 0.90631 0.97761 1.24706 1.20417 0.96424 0.95168 1.16768 1.25633 0.90799 0.98417 1.10701 1.83574 0.90077 1.07703 1.73978 1.86478 1.12594 1.30848 1.87555 1.23826 0.94573 0.80580 1.07735 1.21994 0.90549 0.88959 0.71599 1.90502 1.88159 1.16822 1.42448 0.90678 0.88551 0.82661 0.82644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.61 13.66 21.84 0.30 -41.31 14 2 C 0.02 0.86 5.52 85.25 0.47 1.33 14 3 Si 0.91 33.11 24.49 68.60 1.68 34.79 14 4 H -0.19 -6.14 7.11 99.48 0.71 -5.44 14 5 H -0.17 -5.47 6.31 97.22 0.61 -4.86 14 6 H -0.17 -5.77 6.34 97.77 0.62 -5.15 14 7 C -0.48 -25.50 9.70 23.10 0.22 -25.28 14 8 H 0.06 3.62 8.06 -2.91 -0.02 3.59 14 9 C -0.01 -0.48 5.95 22.39 0.13 -0.35 14 10 C -0.30 -15.54 10.30 22.43 0.23 -15.31 14 11 C -0.27 -12.78 6.45 -21.39 -0.14 -12.92 14 12 C -0.10 -3.99 8.18 67.94 0.56 -3.44 14 13 S 0.19 7.83 15.11 -56.49 -0.85 6.98 14 14 O -0.26 -9.07 11.05 -93.53 -1.03 -10.10 14 15 C 0.01 0.28 7.92 71.33 0.57 0.85 14 16 C 0.39 15.60 7.83 27.11 0.21 15.81 14 17 O -0.50 -22.42 18.03 -3.43 -0.06 -22.48 14 18 H 0.28 14.32 8.72 -92.71 -0.81 13.51 14 19 H 0.10 5.22 8.06 -2.91 -0.02 5.19 14 20 H 0.16 3.26 8.14 -2.38 -0.02 3.24 14 21 H 0.16 3.26 8.14 -2.39 -0.02 3.24 14 Total: -1.00 -61.44 205.10 3.33 -58.11 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 1.05 Total: 13.32 kcal Atomic # 6 Polarization: -41.56 SS G_CDS: 2.25 Total: -39.30 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.30 Total: -41.31 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -1.10 Total: -32.59 kcal Atomic # 14 Polarization: 33.11 SS G_CDS: 1.68 Total: 34.79 kcal Atomic # 16 Polarization: 7.83 SS G_CDS: -0.85 Total: 6.98 kcal Total: -61.44 3.33 -58.11 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260472786.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.509 kcal (2) G-P(sol) polarization free energy of solvation -61.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds