Wall clock time and date at job start Mon Mar 30 2020 02:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46895 * 109.47284 * 2 1 4 4 C 1.46847 * 111.00316 * 170.00123 * 3 2 1 5 5 C 1.53037 * 109.51845 * 174.15448 * 4 3 2 6 6 C 1.53120 * 109.27732 * 59.18697 * 5 4 3 7 7 C 1.50704 * 109.52413 * 182.44359 * 6 5 4 8 8 C 1.35034 * 119.99506 * 246.10225 * 7 6 5 9 9 C 1.40067 * 120.00402 * 7.37291 * 8 7 6 10 10 H 1.08005 * 120.00204 * 11.20113 * 9 8 7 11 11 C 1.40314 * 120.00241 * 191.20070 * 9 8 7 12 12 N 1.30692 * 119.99731 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00177 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47042 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47057 * 119.99833 * 13 11 9 16 16 H 1.48496 * 109.47203 * 240.00140 * 13 11 9 17 17 C 1.53125 * 109.15994 * 302.34743 * 6 5 4 18 18 C 1.46849 * 110.99124 * 45.79637 * 3 2 1 19 19 H 1.08996 * 109.46747 * 299.99884 * 1 2 3 20 20 H 1.08998 * 109.46835 * 59.99924 * 1 2 3 21 21 H 1.08998 * 109.47082 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47087 * 239.99659 * 2 1 3 23 23 H 1.09004 * 109.47661 * 120.00318 * 2 1 3 24 24 H 1.08998 * 109.46483 * 54.13989 * 4 3 2 25 25 H 1.09005 * 109.46111 * 294.16873 * 4 3 2 26 26 H 1.09000 * 109.50555 * 179.12244 * 5 4 3 27 27 H 1.08998 * 109.50247 * 299.20598 * 5 4 3 28 28 H 1.08997 * 109.52550 * 62.24617 * 6 5 4 29 29 H 1.07997 * 120.00235 * 66.09925 * 7 6 5 30 30 H 1.07998 * 119.99720 * 187.37930 * 8 7 6 31 31 H 0.96993 * 119.99852 * 179.97438 * 12 11 9 32 32 H 1.08998 * 109.50561 * 177.59556 * 17 6 5 33 33 H 1.09006 * 109.49845 * 297.67604 * 17 6 5 34 34 H 1.09007 * 109.46914 * 65.83478 * 18 3 2 35 35 H 1.08991 * 109.45525 * 305.85654 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4680 1.4311 0.2380 5 6 3.9654 2.8705 0.0869 6 6 3.2354 3.7657 1.0920 7 6 3.6772 5.1946 0.9075 8 6 4.3735 5.8173 1.8826 9 6 4.8188 5.0940 2.9964 10 1 4.7677 4.0151 2.9954 11 6 5.3312 5.7709 4.1135 12 7 5.3926 7.0764 4.1149 13 14 5.9244 4.8064 5.5991 14 1 5.7473 3.3533 5.3488 15 1 7.3613 5.0967 5.8363 16 1 5.1357 5.2022 6.7934 17 6 1.7263 3.6619 0.8541 18 6 1.2938 2.1995 0.9828 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 3.9755 0.7936 -0.4859 25 1 3.6817 1.0769 1.2465 26 1 5.0377 2.9070 0.2789 27 1 3.7648 3.2204 -0.9257 28 1 3.4674 3.4397 2.1059 29 1 3.4369 5.7206 -0.0046 30 1 4.5870 6.8730 1.8038 31 1 5.7465 7.5444 4.8872 32 1 1.1989 4.2639 1.5941 33 1 1.4898 4.0252 -0.1461 34 1 1.5179 1.8417 1.9878 35 1 0.2223 2.1202 0.7997 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260486498.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:08 Heat of formation + Delta-G solvation = -7.612005 kcal Electronic energy + Delta-G solvation = -13940.076497 eV Core-core repulsion = 11744.170879 eV Total energy + Delta-G solvation = -2195.905617 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.67343 -35.06575 -33.43304 -31.05932 -30.23730 -28.62993 -25.30797 -23.60486 -22.33313 -20.90592 -19.10271 -18.65201 -16.37554 -15.50244 -14.88313 -14.71160 -14.31306 -13.48608 -13.42264 -12.97981 -12.81118 -12.26626 -12.01540 -11.50860 -11.45746 -11.29404 -11.21466 -10.94135 -10.76071 -10.52326 -10.34877 -9.94459 -9.69709 -9.34719 -9.14621 -8.68858 -7.93772 -7.46896 -6.66459 -4.17703 2.97405 3.12221 3.18209 3.96335 4.03545 4.25449 5.12212 5.24029 5.41342 5.45147 5.56503 5.71900 5.74976 5.84155 5.88934 6.05590 6.10165 6.13587 6.21933 6.36046 6.43950 6.68448 6.77007 6.86160 7.15942 7.21890 7.27757 7.34791 7.50262 7.55721 7.76944 7.99430 8.50477 8.77109 9.20436 9.36464 10.37639 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.041682 B = 0.007314 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.591640 B = 3827.246968 C = 4083.677196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.049 3.951 3 N -0.538 5.538 4 C 0.056 3.944 5 C -0.104 4.104 6 C -0.012 4.012 7 C -0.408 4.408 8 C 0.049 3.951 9 C -0.462 4.462 10 H 0.074 0.926 11 C 0.071 3.929 12 N -0.826 5.826 13 Si 0.905 3.095 14 H -0.262 1.262 15 H -0.275 1.275 16 H -0.275 1.275 17 C -0.104 4.104 18 C 0.050 3.950 19 H 0.058 0.942 20 H 0.062 0.938 21 H 0.054 0.946 22 H 0.069 0.931 23 H 0.027 0.973 24 H 0.061 0.939 25 H 0.027 0.973 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.278 0.722 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.026 0.974 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 -10.335 -3.384 12.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.079 4.079 3 N -0.263 5.263 4 C -0.072 4.072 5 C -0.142 4.142 6 C -0.031 4.031 7 C -0.430 4.430 8 C 0.029 3.971 9 C -0.492 4.492 10 H 0.092 0.908 11 C -0.144 4.144 12 N -0.453 5.453 13 Si 0.731 3.269 14 H -0.186 1.186 15 H -0.200 1.200 16 H -0.201 1.201 17 C -0.142 4.142 18 C -0.077 4.077 19 H 0.077 0.923 20 H 0.081 0.919 21 H 0.073 0.927 22 H 0.088 0.912 23 H 0.045 0.955 24 H 0.080 0.920 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.364 -9.936 -3.691 11.879 hybrid contribution 0.501 -0.662 1.547 1.756 sum -4.862 -10.598 -2.144 11.856 Atomic orbital electron populations 1.21932 0.95449 1.01280 1.02574 1.22057 0.95459 0.90213 1.00138 1.62041 1.04504 1.09337 1.50437 1.22173 0.87276 0.99147 0.98557 1.21668 0.99590 0.92338 1.00624 1.19627 0.91358 0.94610 0.97467 1.21881 1.22159 0.96668 1.02258 1.19871 0.89463 0.95866 0.91870 1.19674 1.35223 0.94780 0.99568 0.90785 1.26106 0.93269 0.94779 1.00221 1.69587 1.36853 1.08348 1.30528 0.86311 0.78758 0.80951 0.80914 1.18567 1.20011 1.20054 1.21648 0.98541 0.92858 1.01129 1.22283 0.97756 0.95116 0.92560 0.92264 0.91887 0.92700 0.91249 0.95506 0.92027 0.95478 0.92157 0.92493 0.91724 0.91907 0.90760 0.91185 0.92289 0.92516 0.95584 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.16 37.16 0.34 -1.39 16 2 C 0.05 0.65 5.99 -3.83 -0.02 0.62 16 3 N -0.54 -8.67 4.81 -234.67 -1.13 -9.80 16 4 C 0.06 0.95 5.42 -3.83 -0.02 0.93 16 5 C -0.10 -2.04 5.36 -26.65 -0.14 -2.19 16 6 C -0.01 -0.27 2.28 -91.64 -0.21 -0.48 16 7 C -0.41 -10.27 8.94 -35.45 -0.32 -10.59 16 8 C 0.05 1.36 9.35 -40.03 -0.37 0.99 16 9 C -0.46 -12.69 8.42 -38.12 -0.32 -13.01 16 10 H 0.07 2.00 5.88 -52.48 -0.31 1.69 16 11 C 0.07 1.89 5.50 -17.26 -0.09 1.79 16 12 N -0.83 -22.50 12.90 55.57 0.72 -21.78 16 13 Si 0.91 19.66 29.56 -169.99 -5.03 14.63 16 14 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 15 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 16 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 17 C -0.10 -2.01 5.36 -26.65 -0.14 -2.16 16 18 C 0.05 0.84 4.85 -3.83 -0.02 0.82 16 19 H 0.06 0.68 6.21 -51.93 -0.32 0.35 16 20 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 24 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 1.55 5.59 -51.93 -0.29 1.26 16 29 H 0.06 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.07 2.15 7.48 -52.49 -0.39 1.76 16 31 H 0.28 6.88 8.29 -40.82 -0.34 6.54 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.03 0.45 8.14 -51.92 -0.42 0.02 16 35 H 0.07 1.03 5.81 -51.93 -0.30 0.73 16 LS Contribution 276.03 15.07 4.16 4.16 Total: -1.00 -27.46 276.03 -8.42 -35.88 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.82 Total: 1.57 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: -1.32 Total: -24.66 kcal Atomic # 7 Polarization: -31.17 SS G_CDS: -0.41 Total: -31.58 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.46 -8.42 -35.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260486498.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.271 kcal (2) G-P(sol) polarization free energy of solvation -27.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds