Wall clock time and date at job start Mon Mar 30 2020 02:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46895 * 109.47284 * 2 1 4 4 C 1.46847 * 111.00316 * 170.00123 * 3 2 1 5 5 C 1.53037 * 109.51845 * 174.15448 * 4 3 2 6 6 C 1.53120 * 109.27732 * 59.18697 * 5 4 3 7 7 C 1.50704 * 109.52413 * 182.44359 * 6 5 4 8 8 C 1.35034 * 119.99506 * 246.10225 * 7 6 5 9 9 C 1.40067 * 120.00402 * 7.37291 * 8 7 6 10 10 H 1.08005 * 120.00204 * 11.20113 * 9 8 7 11 11 C 1.40314 * 120.00241 * 191.20070 * 9 8 7 12 12 N 1.30692 * 119.99731 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00177 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47042 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47057 * 119.99833 * 13 11 9 16 16 H 1.48496 * 109.47203 * 240.00140 * 13 11 9 17 17 C 1.53125 * 109.15994 * 302.34743 * 6 5 4 18 18 C 1.46849 * 110.99124 * 45.79637 * 3 2 1 19 19 H 1.08996 * 109.46747 * 299.99884 * 1 2 3 20 20 H 1.08998 * 109.46835 * 59.99924 * 1 2 3 21 21 H 1.08998 * 109.47082 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47087 * 239.99659 * 2 1 3 23 23 H 1.09004 * 109.47661 * 120.00318 * 2 1 3 24 24 H 1.08998 * 109.46483 * 54.13989 * 4 3 2 25 25 H 1.09005 * 109.46111 * 294.16873 * 4 3 2 26 26 H 1.09000 * 109.50555 * 179.12244 * 5 4 3 27 27 H 1.08998 * 109.50247 * 299.20598 * 5 4 3 28 28 H 1.08997 * 109.52550 * 62.24617 * 6 5 4 29 29 H 1.07997 * 120.00235 * 66.09925 * 7 6 5 30 30 H 1.07998 * 119.99720 * 187.37930 * 8 7 6 31 31 H 0.96993 * 119.99852 * 179.97438 * 12 11 9 32 32 H 1.08998 * 109.50561 * 177.59556 * 17 6 5 33 33 H 1.09006 * 109.49845 * 297.67604 * 17 6 5 34 34 H 1.09007 * 109.46914 * 65.83478 * 18 3 2 35 35 H 1.08991 * 109.45525 * 305.85654 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4680 1.4311 0.2380 5 6 3.9654 2.8705 0.0869 6 6 3.2354 3.7657 1.0920 7 6 3.6772 5.1946 0.9075 8 6 4.3735 5.8173 1.8826 9 6 4.8188 5.0940 2.9964 10 1 4.7677 4.0151 2.9954 11 6 5.3312 5.7709 4.1135 12 7 5.3926 7.0764 4.1149 13 14 5.9244 4.8064 5.5991 14 1 5.7473 3.3533 5.3488 15 1 7.3613 5.0967 5.8363 16 1 5.1357 5.2022 6.7934 17 6 1.7263 3.6619 0.8541 18 6 1.2938 2.1995 0.9828 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 3.9755 0.7936 -0.4859 25 1 3.6817 1.0769 1.2465 26 1 5.0377 2.9070 0.2789 27 1 3.7648 3.2204 -0.9257 28 1 3.4674 3.4397 2.1059 29 1 3.4369 5.7206 -0.0046 30 1 4.5870 6.8730 1.8038 31 1 5.7465 7.5444 4.8872 32 1 1.1989 4.2639 1.5941 33 1 1.4898 4.0252 -0.1461 34 1 1.5179 1.8417 1.9878 35 1 0.2223 2.1202 0.7997 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260486498.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:08 Heat of formation + Delta-G solvation = -23.415331 kcal Electronic energy + Delta-G solvation = -13940.761780 eV Core-core repulsion = 11744.170879 eV Total energy + Delta-G solvation = -2196.590901 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.07445 -36.82224 -35.19786 -32.69730 -31.74803 -30.05622 -27.17548 -25.11628 -23.82519 -22.17478 -20.68010 -20.61913 -18.28745 -16.94653 -16.64043 -15.96895 -15.58241 -15.22239 -15.04564 -14.43264 -14.32862 -13.75986 -13.59262 -13.08347 -13.01384 -12.62297 -12.51090 -12.45276 -12.26094 -12.03007 -11.90879 -11.77375 -11.43524 -11.11593 -10.87459 -10.64675 -9.55538 -9.19564 -8.66600 -6.27974 1.22671 1.35119 1.50556 1.96655 2.21109 3.03257 3.38984 4.06214 4.09517 4.14188 4.32634 4.34831 4.50967 4.63958 4.65622 4.67217 4.79696 4.89933 4.94340 5.00625 5.14434 5.19573 5.20428 5.26656 5.27912 5.33230 5.39354 5.61417 5.84149 5.96083 6.21060 6.28351 6.40780 6.66994 7.10029 7.24030 8.40248 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.041682 B = 0.007314 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.591640 B = 3827.246968 C = 4083.677196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 N -0.546 5.546 4 C 0.063 3.937 5 C -0.099 4.099 6 C -0.013 4.013 7 C -0.396 4.396 8 C 0.018 3.982 9 C -0.487 4.487 10 H 0.074 0.926 11 C 0.024 3.976 12 N -0.861 5.861 13 Si 0.982 3.018 14 H -0.259 1.259 15 H -0.263 1.263 16 H -0.264 1.264 17 C -0.100 4.100 18 C 0.058 3.942 19 H 0.055 0.945 20 H 0.061 0.939 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.029 0.971 24 H 0.085 0.915 25 H 0.022 0.978 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.288 0.712 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.020 0.980 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.964 -12.656 -3.112 14.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.080 4.080 3 N -0.272 5.272 4 C -0.065 4.065 5 C -0.137 4.137 6 C -0.032 4.032 7 C -0.418 4.418 8 C -0.002 4.002 9 C -0.517 4.517 10 H 0.092 0.908 11 C -0.188 4.188 12 N -0.489 5.489 13 Si 0.803 3.197 14 H -0.182 1.182 15 H -0.187 1.187 16 H -0.189 1.189 17 C -0.138 4.138 18 C -0.070 4.070 19 H 0.074 0.926 20 H 0.080 0.920 21 H 0.095 0.905 22 H 0.101 0.899 23 H 0.047 0.953 24 H 0.103 0.897 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.983 -12.254 -3.440 14.064 hybrid contribution 0.652 0.118 1.347 1.501 sum -5.331 -12.137 -2.093 13.420 Atomic orbital electron populations 1.21907 0.93912 1.02745 1.02297 1.22184 0.96769 0.88190 1.00894 1.62038 1.03813 1.11346 1.49970 1.22063 0.88269 0.97122 0.99058 1.21529 0.98684 0.94018 0.99447 1.19599 0.93677 0.92814 0.97087 1.22193 1.20073 0.98437 1.01094 1.19898 0.91695 0.94941 0.93634 1.19802 1.36683 0.94792 1.00409 0.90801 1.27034 0.92868 0.95759 1.03104 1.69654 1.37355 1.09966 1.31961 0.85158 0.78676 0.79201 0.76665 1.18227 1.18748 1.18917 1.21541 0.96237 0.95273 1.00708 1.22185 0.99181 0.93004 0.92597 0.92611 0.92007 0.90475 0.89891 0.95273 0.89667 0.95977 0.93304 0.92602 0.93874 0.92163 0.93395 0.90217 0.93159 0.92580 0.96130 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.16 71.98 0.66 -2.19 16 2 C 0.05 1.07 5.99 86.30 0.52 1.59 16 3 N -0.55 -16.21 4.81 -896.36 -4.31 -20.52 16 4 C 0.06 1.99 5.42 86.33 0.47 2.46 16 5 C -0.10 -3.82 5.36 30.65 0.16 -3.66 16 6 C -0.01 -0.59 2.28 -11.46 -0.03 -0.62 16 7 C -0.40 -20.57 8.94 24.95 0.22 -20.34 16 8 C 0.02 1.06 9.35 21.98 0.21 1.26 16 9 C -0.49 -27.50 8.42 23.22 0.20 -27.30 16 10 H 0.07 4.09 5.88 -2.91 -0.02 4.07 16 11 C 0.02 1.30 5.50 85.37 0.47 1.77 16 12 N -0.86 -47.89 12.90 21.89 0.28 -47.61 16 13 Si 0.98 40.19 29.56 68.60 2.03 42.21 16 14 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 15 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 16 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 17 C -0.10 -3.81 5.36 30.65 0.16 -3.64 16 18 C 0.06 1.82 4.85 86.33 0.42 2.23 16 19 H 0.05 1.09 6.21 -2.39 -0.01 1.07 16 20 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 23 H 0.03 0.67 8.08 -2.39 -0.02 0.65 16 24 H 0.08 2.33 8.12 -2.39 -0.02 2.31 16 25 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.04 2.11 5.59 -2.39 -0.01 2.09 16 29 H 0.06 3.09 8.06 -2.91 -0.02 3.07 16 30 H 0.05 2.95 7.48 -2.91 -0.02 2.92 16 31 H 0.29 14.36 8.29 -92.71 -0.77 13.59 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.09 2.52 5.81 -2.39 -0.01 2.50 16 Total: -1.00 -59.87 276.03 2.50 -57.37 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 1.03 Total: 16.99 kcal Atomic # 6 Polarization: -51.90 SS G_CDS: 3.46 Total: -48.44 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -4.03 Total: -68.13 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.21 kcal Total: -59.87 2.50 -57.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260486498.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.956 kcal (2) G-P(sol) polarization free energy of solvation -59.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds