Wall clock time and date at job start Mon Mar 30 2020 02:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47346 * 2 1 4 4 C 1.46851 * 110.99629 * 66.04558 * 3 2 1 5 5 C 1.53041 * 109.51359 * 174.16572 * 4 3 2 6 6 C 1.53097 * 109.29001 * 59.18626 * 5 4 3 7 7 C 1.53118 * 109.15268 * 302.33944 * 6 5 4 8 8 H 1.09006 * 109.53675 * 297.69136 * 7 6 5 9 9 C 1.50697 * 109.49982 * 177.59635 * 7 6 5 10 10 C 1.35040 * 120.00211 * 126.29231 * 9 7 6 11 11 C 1.40072 * 119.99676 * 7.39088 * 10 9 7 12 12 H 1.08004 * 120.00254 * 11.22354 * 11 10 9 13 13 C 1.40307 * 119.99947 * 191.21689 * 11 10 9 14 14 N 1.30690 * 120.00164 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99879 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47355 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47104 * 120.00546 * 15 13 11 18 18 H 1.48506 * 109.47174 * 240.00051 * 15 13 11 19 19 C 1.46849 * 111.00062 * 301.84059 * 3 2 1 20 20 H 1.09002 * 109.47453 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47331 * 299.99906 * 1 2 3 22 22 H 1.09007 * 109.47085 * 59.99561 * 1 2 3 23 23 H 1.09001 * 109.46854 * 240.00692 * 2 1 3 24 24 H 1.08998 * 109.47281 * 120.00390 * 2 1 3 25 25 H 1.08997 * 109.46695 * 294.17538 * 4 3 2 26 26 H 1.09001 * 109.46251 * 54.15677 * 4 3 2 27 27 H 1.08997 * 109.49918 * 179.12070 * 5 4 3 28 28 H 1.08999 * 109.50220 * 299.23331 * 5 4 3 29 29 H 1.09000 * 109.52287 * 182.43585 * 6 5 4 30 30 H 1.08991 * 109.52243 * 62.24267 * 6 5 4 31 31 H 1.07998 * 120.00236 * 306.28944 * 9 7 6 32 32 H 1.07995 * 120.00131 * 187.38691 * 10 9 7 33 33 H 0.96999 * 120.00159 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.46074 * 305.84648 * 19 3 2 35 35 H 1.09001 * 109.46420 * 65.82190 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0666 1.2529 5 6 2.3185 3.4528 1.2787 6 6 1.8235 4.2650 0.0791 7 6 2.1568 3.5100 -1.2107 8 1 3.2379 3.4069 -1.3037 9 6 1.6206 4.2742 -2.3937 10 6 2.4416 4.6007 -3.4150 11 6 3.7490 4.0992 -3.4504 12 1 4.0451 3.3149 -2.7695 13 6 4.6738 4.6157 -4.3705 14 7 4.3156 5.5650 -5.1942 15 14 6.4171 3.9463 -4.4182 16 1 6.5676 2.8838 -3.3917 17 1 6.6925 3.3782 -5.7623 18 1 7.3768 5.0446 -4.1389 19 6 1.5133 2.1223 -1.1646 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5137 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 0.5874 2.1708 1.3200 26 1 2.0318 1.4809 2.0981 27 1 2.0463 3.9646 2.2017 28 1 3.4022 3.3488 1.2256 29 1 2.3156 5.2375 0.0695 30 1 0.7447 4.4023 0.1524 31 1 0.5798 4.5606 -2.4249 32 1 2.0901 5.2485 -4.2044 33 1 4.9550 5.9223 -5.8300 34 1 1.7606 1.5769 -2.0753 35 1 0.4311 2.2262 -1.0862 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260492394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:15 Heat of formation + Delta-G solvation = -9.504096 kcal Electronic energy + Delta-G solvation = -14081.124568 eV Core-core repulsion = 11885.136903 eV Total energy + Delta-G solvation = -2195.987665 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.72521 -34.85295 -33.51261 -31.67663 -29.15853 -28.71587 -24.91239 -24.28085 -22.22943 -21.20187 -18.81008 -18.61297 -16.33025 -15.12481 -14.81014 -14.60887 -14.23592 -13.76412 -13.40225 -13.05201 -12.61411 -12.17466 -12.02296 -11.90398 -11.44509 -11.27829 -11.12713 -10.98263 -10.69485 -10.31801 -10.25934 -9.93487 -9.68501 -9.35521 -9.22419 -8.68832 -7.78211 -7.47286 -6.65730 -4.17631 3.00179 3.15580 3.23628 3.95107 4.06690 4.45219 5.21826 5.31656 5.41076 5.49037 5.58769 5.60283 5.77578 5.86414 5.99094 6.04315 6.15807 6.22268 6.30579 6.38050 6.47065 6.60467 6.71767 6.74993 7.09790 7.26000 7.29456 7.36517 7.57059 7.63681 7.86511 8.02056 8.50845 8.79614 9.20257 9.37063 10.38044 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.035494 B = 0.008049 C = 0.007726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.678993 B = 3478.037540 C = 3623.104253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.059 3.941 5 C -0.118 4.118 6 C -0.108 4.108 7 C -0.006 4.006 8 H 0.077 0.923 9 C -0.416 4.416 10 C 0.054 3.946 11 C -0.460 4.460 12 H 0.079 0.921 13 C 0.072 3.928 14 N -0.825 5.825 15 Si 0.906 3.094 16 H -0.259 1.259 17 H -0.275 1.275 18 H -0.275 1.275 19 C 0.067 3.933 20 H 0.053 0.947 21 H 0.052 0.948 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.027 0.973 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.278 0.722 34 H 0.067 0.933 35 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 -6.697 8.563 11.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.078 4.078 3 N -0.263 5.263 4 C -0.069 4.069 5 C -0.156 4.156 6 C -0.146 4.146 7 C -0.025 4.025 8 H 0.095 0.905 9 C -0.438 4.438 10 C 0.034 3.966 11 C -0.490 4.490 12 H 0.097 0.903 13 C -0.144 4.144 14 N -0.453 5.453 15 Si 0.731 3.269 16 H -0.182 1.182 17 H -0.201 1.201 18 H -0.201 1.201 19 C -0.060 4.060 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.139 -6.562 8.331 10.819 hybrid contribution -0.212 -0.183 -0.114 0.302 sum -2.350 -6.745 8.217 10.887 Atomic orbital electron populations 1.22438 0.98861 1.01561 1.02176 1.22122 0.92499 0.91179 1.02017 1.62230 1.59500 1.01509 1.03068 1.22012 0.97383 0.95472 0.92006 1.21631 1.01091 0.94629 0.98251 1.21634 0.99311 0.98760 0.94903 1.19609 1.00200 0.90318 0.92350 0.90465 1.21821 0.97439 1.23847 1.00712 1.19880 0.93113 0.90819 0.92793 1.19750 0.96356 1.17842 1.15095 0.90342 1.26130 1.01077 0.93441 0.93735 1.69592 1.36674 1.22295 1.16706 0.86294 0.81868 0.79784 0.78950 1.18244 1.20090 1.20061 1.22324 0.96258 0.96192 0.91249 0.92752 0.92933 0.92093 0.90949 0.91590 0.95512 0.92055 0.92839 0.91518 0.92453 0.93878 0.92150 0.90768 0.91170 0.91420 0.95965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.49 9.21 37.16 0.34 -2.14 16 2 C 0.05 0.72 6.08 -3.82 -0.02 0.69 16 3 N -0.54 -9.31 4.86 -234.66 -1.14 -10.45 16 4 C 0.06 0.92 5.05 -3.83 -0.02 0.90 16 5 C -0.12 -1.93 6.09 -26.66 -0.16 -2.09 16 6 C -0.11 -2.09 5.27 -26.62 -0.14 -2.23 16 7 C -0.01 -0.14 2.38 -91.69 -0.22 -0.36 16 8 H 0.08 1.90 5.58 -51.93 -0.29 1.61 16 9 C -0.42 -10.43 8.93 -35.45 -0.32 -10.75 16 10 C 0.05 1.49 9.35 -40.03 -0.37 1.12 16 11 C -0.46 -12.66 8.42 -38.12 -0.32 -12.98 16 12 H 0.08 2.14 5.88 -52.48 -0.31 1.83 16 13 C 0.07 1.89 5.50 -17.26 -0.09 1.80 16 14 N -0.83 -22.48 12.90 55.57 0.72 -21.76 16 15 Si 0.91 19.77 29.56 -169.99 -5.03 14.75 16 16 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 17 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 19 C 0.07 1.32 4.10 -3.83 -0.02 1.30 16 20 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.67 6.68 -51.93 -0.35 0.32 16 22 H 0.06 0.87 6.51 -51.93 -0.34 0.53 16 23 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 25 H 0.03 0.41 6.75 -51.93 -0.35 0.06 16 26 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.50 8.06 -52.49 -0.42 1.07 16 32 H 0.07 2.14 7.48 -52.49 -0.39 1.75 16 33 H 0.28 6.88 8.29 -40.82 -0.34 6.54 16 34 H 0.07 1.42 8.12 -51.93 -0.42 1.00 16 35 H 0.02 0.43 6.61 -51.93 -0.34 0.09 16 LS Contribution 273.97 15.07 4.13 4.13 Total: -1.00 -27.30 273.97 -8.39 -35.68 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.72 Total: 2.39 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: -1.34 Total: -24.74 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: -0.42 Total: -32.21 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.30 -8.39 -35.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260492394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.178 kcal (2) G-P(sol) polarization free energy of solvation -27.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds