Wall clock time and date at job start Mon Mar 30 2020 02:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47346 * 2 1 4 4 C 1.46851 * 110.99629 * 66.04558 * 3 2 1 5 5 C 1.53041 * 109.51359 * 174.16572 * 4 3 2 6 6 C 1.53097 * 109.29001 * 59.18626 * 5 4 3 7 7 C 1.53118 * 109.15268 * 302.33944 * 6 5 4 8 8 H 1.09006 * 109.53675 * 297.69136 * 7 6 5 9 9 C 1.50697 * 109.49982 * 177.59635 * 7 6 5 10 10 C 1.35040 * 120.00211 * 126.29231 * 9 7 6 11 11 C 1.40072 * 119.99676 * 7.39088 * 10 9 7 12 12 H 1.08004 * 120.00254 * 11.22354 * 11 10 9 13 13 C 1.40307 * 119.99947 * 191.21689 * 11 10 9 14 14 N 1.30690 * 120.00164 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99879 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47355 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47104 * 120.00546 * 15 13 11 18 18 H 1.48506 * 109.47174 * 240.00051 * 15 13 11 19 19 C 1.46849 * 111.00062 * 301.84059 * 3 2 1 20 20 H 1.09002 * 109.47453 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47331 * 299.99906 * 1 2 3 22 22 H 1.09007 * 109.47085 * 59.99561 * 1 2 3 23 23 H 1.09001 * 109.46854 * 240.00692 * 2 1 3 24 24 H 1.08998 * 109.47281 * 120.00390 * 2 1 3 25 25 H 1.08997 * 109.46695 * 294.17538 * 4 3 2 26 26 H 1.09001 * 109.46251 * 54.15677 * 4 3 2 27 27 H 1.08997 * 109.49918 * 179.12070 * 5 4 3 28 28 H 1.08999 * 109.50220 * 299.23331 * 5 4 3 29 29 H 1.09000 * 109.52287 * 182.43585 * 6 5 4 30 30 H 1.08991 * 109.52243 * 62.24267 * 6 5 4 31 31 H 1.07998 * 120.00236 * 306.28944 * 9 7 6 32 32 H 1.07995 * 120.00131 * 187.38691 * 10 9 7 33 33 H 0.96999 * 120.00159 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.46074 * 305.84648 * 19 3 2 35 35 H 1.09001 * 109.46420 * 65.82190 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0666 1.2529 5 6 2.3185 3.4528 1.2787 6 6 1.8235 4.2650 0.0791 7 6 2.1568 3.5100 -1.2107 8 1 3.2379 3.4069 -1.3037 9 6 1.6206 4.2742 -2.3937 10 6 2.4416 4.6007 -3.4150 11 6 3.7490 4.0992 -3.4504 12 1 4.0451 3.3149 -2.7695 13 6 4.6738 4.6157 -4.3705 14 7 4.3156 5.5650 -5.1942 15 14 6.4171 3.9463 -4.4182 16 1 6.5676 2.8838 -3.3917 17 1 6.6925 3.3782 -5.7623 18 1 7.3768 5.0446 -4.1389 19 6 1.5133 2.1223 -1.1646 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5137 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 0.5874 2.1708 1.3200 26 1 2.0318 1.4809 2.0981 27 1 2.0463 3.9646 2.2017 28 1 3.4022 3.3488 1.2256 29 1 2.3156 5.2375 0.0695 30 1 0.7447 4.4023 0.1524 31 1 0.5798 4.5606 -2.4249 32 1 2.0901 5.2485 -4.2044 33 1 4.9550 5.9223 -5.8300 34 1 1.7606 1.5769 -2.0753 35 1 0.4311 2.2262 -1.0862 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260492394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:15 Heat of formation + Delta-G solvation = -25.411207 kcal Electronic energy + Delta-G solvation = -14081.814352 eV Core-core repulsion = 11885.136903 eV Total energy + Delta-G solvation = -2196.677449 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.15234 -36.67057 -35.18629 -33.39214 -30.71201 -30.17069 -26.91532 -25.58164 -23.81573 -22.56614 -20.66737 -20.23936 -18.28087 -16.75467 -16.48642 -15.98372 -15.51326 -15.18234 -14.95363 -14.86355 -14.18324 -13.70820 -13.49361 -13.16787 -13.04767 -12.85811 -12.60751 -12.57135 -12.24507 -12.00289 -11.72585 -11.55144 -11.41278 -11.12589 -10.94423 -10.65611 -9.58642 -9.08226 -8.66327 -6.28022 1.23627 1.37198 1.53502 1.96391 2.23421 3.14017 3.40895 4.07003 4.11210 4.16792 4.23253 4.40296 4.53021 4.58836 4.62934 4.74813 4.80160 4.91723 4.97316 4.99857 5.08260 5.11164 5.21176 5.26433 5.31909 5.32308 5.40667 5.66308 5.78431 5.97540 6.29131 6.34363 6.43848 6.68992 7.09695 7.24905 8.40237 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.035494 B = 0.008049 C = 0.007726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.678993 B = 3478.037540 C = 3623.104253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 N -0.554 5.554 4 C 0.059 3.941 5 C -0.113 4.113 6 C -0.105 4.105 7 C -0.007 4.007 8 H 0.050 0.950 9 C -0.402 4.402 10 C 0.023 3.977 11 C -0.485 4.485 12 H 0.075 0.925 13 C 0.025 3.975 14 N -0.860 5.860 15 Si 0.982 3.018 16 H -0.258 1.258 17 H -0.263 1.263 18 H -0.264 1.264 19 C 0.082 3.918 20 H 0.076 0.924 21 H 0.057 0.943 22 H 0.040 0.960 23 H 0.067 0.933 24 H 0.090 0.910 25 H 0.033 0.967 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.288 0.712 34 H 0.046 0.954 35 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.221 -8.129 10.429 13.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.080 4.080 3 N -0.278 5.278 4 C -0.068 4.068 5 C -0.150 4.150 6 C -0.143 4.143 7 C -0.026 4.026 8 H 0.068 0.932 9 C -0.424 4.424 10 C 0.002 3.998 11 C -0.515 4.515 12 H 0.093 0.907 13 C -0.187 4.187 14 N -0.488 5.488 15 Si 0.802 3.198 16 H -0.182 1.182 17 H -0.188 1.188 18 H -0.188 1.188 19 C -0.046 4.046 20 H 0.095 0.905 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.085 0.915 24 H 0.108 0.892 25 H 0.052 0.948 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.631 -7.994 10.203 13.064 hybrid contribution -0.493 0.283 -0.670 0.878 sum -2.124 -7.711 9.534 12.444 Atomic orbital electron populations 1.22361 0.97754 1.02834 1.01420 1.22219 0.93433 0.89323 1.02992 1.62155 1.60083 1.02792 1.02748 1.22096 0.97819 0.95079 0.91842 1.21601 1.00556 0.95074 0.97812 1.21546 0.99589 0.98319 0.94862 1.19548 0.98490 0.92050 0.92533 0.93153 1.22134 0.96996 1.22403 1.00915 1.19909 0.94349 0.92186 0.93313 1.19846 0.96833 1.18534 1.16276 0.90676 1.27034 1.05450 0.93402 0.92803 1.69652 1.38582 1.23268 1.17333 0.85162 0.76049 0.79207 0.79339 1.18203 1.18766 1.18835 1.21939 0.95961 0.94683 0.92029 0.90524 0.92396 0.94039 0.91477 0.89176 0.94835 0.89251 0.89783 0.92340 0.93728 0.93360 0.92205 0.93271 0.90180 0.93516 0.95768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.31 9.21 71.98 0.66 -3.65 16 2 C 0.05 1.24 6.08 86.30 0.52 1.77 16 3 N -0.55 -18.06 4.86 -896.34 -4.35 -22.41 16 4 C 0.06 1.64 5.05 86.33 0.44 2.08 16 5 C -0.11 -3.40 6.09 30.64 0.19 -3.21 16 6 C -0.11 -3.99 5.27 30.67 0.16 -3.83 16 7 C -0.01 -0.34 2.38 -11.49 -0.03 -0.36 16 8 H 0.05 2.54 5.58 -2.38 -0.01 2.53 16 9 C -0.40 -20.86 8.93 24.95 0.22 -20.63 16 10 C 0.02 1.31 9.35 21.98 0.21 1.51 16 11 C -0.48 -27.62 8.42 23.22 0.20 -27.43 16 12 H 0.08 4.24 5.88 -2.91 -0.02 4.22 16 13 C 0.03 1.36 5.50 85.37 0.47 1.83 16 14 N -0.86 -47.95 12.90 21.89 0.28 -47.66 16 15 Si 0.98 40.69 29.56 68.60 2.03 42.72 16 16 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 17 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 18 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 19 C 0.08 3.21 4.10 86.33 0.35 3.56 16 20 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.06 1.29 6.68 -2.39 -0.02 1.27 16 22 H 0.04 1.12 6.51 -2.38 -0.02 1.10 16 23 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.09 1.93 8.06 -2.39 -0.02 1.91 16 25 H 0.03 0.91 6.75 -2.39 -0.02 0.89 16 26 H 0.09 2.04 8.06 -2.39 -0.02 2.02 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 3.05 8.06 -2.91 -0.02 3.02 16 32 H 0.05 3.01 7.48 -2.91 -0.02 2.99 16 33 H 0.29 14.41 8.29 -92.71 -0.77 13.64 16 34 H 0.05 1.99 8.12 -2.39 -0.02 1.97 16 35 H 0.02 0.93 6.61 -2.39 -0.02 0.92 16 Total: -1.00 -60.23 273.97 2.39 -57.84 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 1.04 Total: 17.87 kcal Atomic # 6 Polarization: -51.75 SS G_CDS: 3.39 Total: -48.36 kcal Atomic # 7 Polarization: -66.00 SS G_CDS: -4.07 Total: -70.07 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -60.23 2.39 -57.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260492394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.428 kcal (2) G-P(sol) polarization free energy of solvation -60.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds