Wall clock time and date at job start Mon Mar 30 2020 02:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.47073 * 2 1 4 4 C 1.46856 * 110.99773 * 66.04885 * 3 2 1 5 5 C 1.53040 * 109.51907 * 185.83986 * 4 3 2 6 6 C 1.53111 * 109.27794 * 300.81736 * 5 4 3 7 7 C 1.53117 * 109.16477 * 57.65523 * 6 5 4 8 8 H 1.09006 * 109.50229 * 62.32612 * 7 6 5 9 9 C 1.50696 * 109.50684 * 182.40430 * 7 6 5 10 10 C 1.35036 * 120.00097 * 246.18126 * 9 7 6 11 11 C 1.40079 * 120.00107 * 6.16180 * 10 9 7 12 12 H 1.07997 * 119.99663 * 355.12114 * 11 10 9 13 13 C 1.40308 * 120.00028 * 175.12203 * 11 10 9 14 14 N 1.30689 * 119.99877 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99913 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47449 * 179.97438 * 15 13 11 17 17 H 1.48504 * 109.47094 * 300.00205 * 15 13 11 18 18 H 1.48506 * 109.47300 * 60.00006 * 15 13 11 19 19 C 1.46842 * 111.00013 * 190.25481 * 3 2 1 20 20 H 1.08993 * 109.47064 * 299.99651 * 1 2 3 21 21 H 1.09001 * 109.46925 * 60.00111 * 1 2 3 22 22 H 1.09001 * 109.46937 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47225 * 239.99728 * 2 1 3 24 24 H 1.09001 * 109.46925 * 119.99889 * 2 1 3 25 25 H 1.08992 * 109.46431 * 65.81857 * 4 3 2 26 26 H 1.09006 * 109.45748 * 305.85079 * 4 3 2 27 27 H 1.09001 * 109.49819 * 180.87379 * 5 4 3 28 28 H 1.08995 * 109.50624 * 60.75914 * 5 4 3 29 29 H 1.09001 * 109.52591 * 297.75040 * 6 5 4 30 30 H 1.09003 * 109.57401 * 177.59523 * 6 5 4 31 31 H 1.07999 * 120.00162 * 66.17802 * 9 7 6 32 32 H 1.07998 * 119.99990 * 186.16994 * 10 9 7 33 33 H 0.96995 * 120.00205 * 0.02562 * 14 13 11 34 34 H 1.09000 * 109.46676 * 54.14777 * 19 3 2 35 35 H 1.09003 * 109.46695 * 294.17641 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0666 1.2530 5 6 2.0656 3.5422 1.1598 6 6 3.5713 3.6469 0.9026 7 6 3.9159 2.8880 -0.3818 8 1 3.4028 3.3492 -1.2258 9 6 5.4045 2.9362 -0.6108 10 6 5.9031 3.6058 -1.6721 11 6 5.0506 4.3623 -2.4864 12 1 3.9847 4.3472 -2.3134 13 6 5.5815 5.1396 -3.5269 14 7 6.8714 5.1575 -3.7365 15 14 4.4448 6.1490 -4.6123 16 1 5.2471 6.8758 -5.6287 17 1 3.4814 5.2473 -5.2937 18 1 3.7019 7.1267 -3.7771 19 6 3.4669 1.4315 -0.2441 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.2029 1.5995 2.0813 26 1 0.5962 1.9883 1.4217 27 1 1.8203 4.0443 2.0956 28 1 1.5228 4.0133 0.3403 29 1 4.1151 3.2106 1.7405 30 1 3.8510 4.6947 0.7929 31 1 6.0727 2.4351 0.0740 32 1 6.9592 3.5581 -1.8932 33 1 7.4616 4.6331 -3.1731 34 1 3.6979 0.8919 -1.1625 35 1 3.9913 0.9674 0.5913 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260492397.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:18 Heat of formation + Delta-G solvation = -12.745040 kcal Electronic energy + Delta-G solvation = -13990.975362 eV Core-core repulsion = 11794.847160 eV Total energy + Delta-G solvation = -2196.128203 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.62643 -35.09811 -33.65352 -31.51891 -29.84638 -28.39059 -24.67531 -23.88139 -22.36530 -21.13189 -19.29579 -19.01791 -16.18307 -15.35750 -14.95248 -14.68866 -14.03533 -13.71241 -13.59544 -13.02451 -12.87657 -12.55984 -11.75663 -11.59468 -11.53200 -11.19780 -11.11493 -10.84549 -10.55578 -10.44837 -10.27342 -9.85264 -9.80618 -9.40216 -9.24462 -8.60382 -7.88148 -7.63280 -7.04747 -4.23147 3.15098 3.24365 3.43991 3.92184 4.14364 4.33809 5.14565 5.33468 5.36468 5.47736 5.52692 5.59675 5.75675 5.82226 5.91110 6.03214 6.15822 6.18353 6.23762 6.27656 6.41056 6.51774 6.63757 6.73078 6.88457 7.17116 7.24891 7.42145 7.56086 7.68925 7.85102 7.88831 8.32462 8.59972 9.10776 9.26126 10.27402 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.035679 B = 0.007711 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.592342 B = 3630.393249 C = 3803.514493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 N -0.540 5.540 4 C 0.059 3.941 5 C -0.118 4.118 6 C -0.109 4.109 7 C -0.004 4.004 8 H 0.078 0.922 9 C -0.417 4.417 10 C 0.029 3.971 11 C -0.520 4.520 12 H 0.076 0.924 13 C 0.027 3.973 14 N -0.836 5.836 15 Si 1.073 2.927 16 H -0.277 1.277 17 H -0.276 1.276 18 H -0.276 1.276 19 C 0.070 3.930 20 H 0.052 0.948 21 H 0.062 0.938 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.024 0.976 25 H 0.023 0.977 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.285 0.715 34 H 0.066 0.934 35 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.636 -4.963 5.729 12.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 N -0.265 5.265 4 C -0.069 4.069 5 C -0.156 4.156 6 C -0.146 4.146 7 C -0.022 4.022 8 H 0.096 0.904 9 C -0.439 4.439 10 C 0.008 3.992 11 C -0.550 4.550 12 H 0.094 0.906 13 C -0.190 4.190 14 N -0.462 5.462 15 Si 0.898 3.102 16 H -0.201 1.201 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.058 4.058 20 H 0.071 0.929 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.089 0.911 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -9.831 -3.664 4.028 11.238 hybrid contribution 0.673 -1.661 2.117 2.774 sum -9.158 -5.326 6.145 12.247 Atomic orbital electron populations 1.21800 0.95441 1.00879 1.02338 1.22034 0.95622 0.89969 1.00231 1.62010 1.16059 1.14276 1.34160 1.22061 0.99529 0.95269 0.90055 1.21637 0.98249 0.94915 1.00801 1.21647 0.93185 1.00976 0.98827 1.19576 0.95322 0.91171 0.96181 0.90370 1.21624 0.92822 1.23080 1.06414 1.19777 0.95262 0.91692 0.92437 1.20606 0.96941 1.23866 1.13559 0.90571 1.27185 0.98006 0.96646 0.97199 1.70502 1.04310 1.34300 1.37077 0.83501 0.74682 0.76197 0.75863 1.20144 1.20169 1.20205 1.22260 0.84399 0.99994 0.99104 0.92925 0.91867 0.92858 0.91077 0.95755 0.95893 0.91542 0.92776 0.91474 0.93947 0.92304 0.92186 0.92188 0.90214 0.91528 0.96483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.85 37.16 0.37 -1.38 16 2 C 0.05 0.71 5.68 -3.82 -0.02 0.69 16 3 N -0.54 -9.33 4.66 -234.67 -1.09 -10.42 16 4 C 0.06 0.92 5.29 -3.83 -0.02 0.90 16 5 C -0.12 -1.96 6.09 -26.65 -0.16 -2.12 16 6 C -0.11 -2.15 5.27 -26.61 -0.14 -2.29 16 7 C 0.00 -0.09 2.43 -91.69 -0.22 -0.31 16 8 H 0.08 1.94 5.38 -51.93 -0.28 1.66 16 9 C -0.42 -10.53 8.94 -35.45 -0.32 -10.84 16 10 C 0.03 0.79 9.32 -40.03 -0.37 0.42 16 11 C -0.52 -14.36 8.64 -38.11 -0.33 -14.69 16 12 H 0.08 2.09 5.51 -52.49 -0.29 1.80 16 13 C 0.03 0.71 5.50 -17.26 -0.09 0.62 16 14 N -0.84 -23.30 13.59 55.57 0.76 -22.54 16 15 Si 1.07 22.95 29.94 -169.99 -5.09 17.86 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 17 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 19 C 0.07 1.38 4.72 -3.84 -0.02 1.36 16 20 H 0.05 0.60 6.44 -51.93 -0.33 0.26 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.07 1.01 7.98 -51.93 -0.41 0.59 16 24 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.91 6.22 -51.93 -0.32 0.59 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.50 8.06 -52.49 -0.42 1.07 16 32 H 0.06 1.65 6.25 -52.49 -0.33 1.33 16 33 H 0.28 7.93 6.54 -40.82 -0.27 7.67 16 34 H 0.07 1.36 8.01 -51.93 -0.42 0.95 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 274.89 15.07 4.14 4.14 Total: -1.00 -27.83 274.89 -8.29 -36.12 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.67 Total: 2.48 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: -1.33 Total: -27.65 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: -0.34 Total: -32.96 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.09 Total: 17.86 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.83 -8.29 -36.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260492397.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.378 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds