Wall clock time and date at job start Mon Mar 30 2020 02:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.47073 * 2 1 4 4 C 1.46856 * 110.99773 * 66.04885 * 3 2 1 5 5 C 1.53040 * 109.51907 * 185.83986 * 4 3 2 6 6 C 1.53111 * 109.27794 * 300.81736 * 5 4 3 7 7 C 1.53117 * 109.16477 * 57.65523 * 6 5 4 8 8 H 1.09006 * 109.50229 * 62.32612 * 7 6 5 9 9 C 1.50696 * 109.50684 * 182.40430 * 7 6 5 10 10 C 1.35036 * 120.00097 * 246.18126 * 9 7 6 11 11 C 1.40079 * 120.00107 * 6.16180 * 10 9 7 12 12 H 1.07997 * 119.99663 * 355.12114 * 11 10 9 13 13 C 1.40308 * 120.00028 * 175.12203 * 11 10 9 14 14 N 1.30689 * 119.99877 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99913 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47449 * 179.97438 * 15 13 11 17 17 H 1.48504 * 109.47094 * 300.00205 * 15 13 11 18 18 H 1.48506 * 109.47300 * 60.00006 * 15 13 11 19 19 C 1.46842 * 111.00013 * 190.25481 * 3 2 1 20 20 H 1.08993 * 109.47064 * 299.99651 * 1 2 3 21 21 H 1.09001 * 109.46925 * 60.00111 * 1 2 3 22 22 H 1.09001 * 109.46937 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47225 * 239.99728 * 2 1 3 24 24 H 1.09001 * 109.46925 * 119.99889 * 2 1 3 25 25 H 1.08992 * 109.46431 * 65.81857 * 4 3 2 26 26 H 1.09006 * 109.45748 * 305.85079 * 4 3 2 27 27 H 1.09001 * 109.49819 * 180.87379 * 5 4 3 28 28 H 1.08995 * 109.50624 * 60.75914 * 5 4 3 29 29 H 1.09001 * 109.52591 * 297.75040 * 6 5 4 30 30 H 1.09003 * 109.57401 * 177.59523 * 6 5 4 31 31 H 1.07999 * 120.00162 * 66.17802 * 9 7 6 32 32 H 1.07998 * 119.99990 * 186.16994 * 10 9 7 33 33 H 0.96995 * 120.00205 * 0.02562 * 14 13 11 34 34 H 1.09000 * 109.46676 * 54.14777 * 19 3 2 35 35 H 1.09003 * 109.46695 * 294.17641 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0666 1.2530 5 6 2.0656 3.5422 1.1598 6 6 3.5713 3.6469 0.9026 7 6 3.9159 2.8880 -0.3818 8 1 3.4028 3.3492 -1.2258 9 6 5.4045 2.9362 -0.6108 10 6 5.9031 3.6058 -1.6721 11 6 5.0506 4.3623 -2.4864 12 1 3.9847 4.3472 -2.3134 13 6 5.5815 5.1396 -3.5269 14 7 6.8714 5.1575 -3.7365 15 14 4.4448 6.1490 -4.6123 16 1 5.2471 6.8758 -5.6287 17 1 3.4814 5.2473 -5.2937 18 1 3.7019 7.1267 -3.7771 19 6 3.4669 1.4315 -0.2441 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.2029 1.5995 2.0813 26 1 0.5962 1.9883 1.4217 27 1 1.8203 4.0443 2.0956 28 1 1.5228 4.0133 0.3403 29 1 4.1151 3.2106 1.7405 30 1 3.8510 4.6947 0.7929 31 1 6.0727 2.4351 0.0740 32 1 6.9592 3.5581 -1.8932 33 1 7.4616 4.6331 -3.1731 34 1 3.6979 0.8919 -1.1625 35 1 3.9913 0.9674 0.5913 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260492397.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:17 Heat of formation + Delta-G solvation = -28.704796 kcal Electronic energy + Delta-G solvation = -13991.667429 eV Core-core repulsion = 11794.847160 eV Total energy + Delta-G solvation = -2196.820269 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.08454 -36.97964 -35.27859 -33.21703 -31.20630 -30.03241 -26.66424 -25.28427 -23.92919 -22.50750 -21.08515 -20.69353 -18.07275 -16.96028 -16.59940 -16.01322 -15.81515 -15.19657 -15.09338 -14.56621 -14.30433 -13.92305 -13.35168 -13.07113 -12.93972 -12.79712 -12.62727 -12.33672 -12.06581 -11.96002 -11.82982 -11.58765 -11.48247 -11.15313 -10.96704 -10.61653 -9.74668 -9.22014 -9.16118 -6.37551 1.35053 1.50657 1.79843 1.98525 2.36307 3.01531 3.33107 3.99164 4.04859 4.09106 4.23722 4.34611 4.45928 4.55700 4.62428 4.67231 4.71743 4.79958 4.87999 4.91843 5.05450 5.11396 5.12389 5.17290 5.31271 5.36859 5.58898 5.61550 5.70662 5.78362 6.18787 6.23117 6.29382 6.48934 6.97947 7.13743 8.14485 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.035679 B = 0.007711 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.592342 B = 3630.393249 C = 3803.514493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.046 3.954 3 N -0.552 5.552 4 C 0.059 3.941 5 C -0.112 4.112 6 C -0.105 4.105 7 C -0.006 4.006 8 H 0.053 0.947 9 C -0.401 4.401 10 C -0.003 4.003 11 C -0.543 4.543 12 H 0.075 0.925 13 C -0.013 4.013 14 N -0.857 5.857 15 Si 1.122 2.878 16 H -0.271 1.271 17 H -0.261 1.261 18 H -0.260 1.260 19 C 0.081 3.919 20 H 0.061 0.939 21 H 0.054 0.946 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.033 0.967 25 H 0.028 0.972 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.272 0.728 34 H 0.052 0.948 35 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.087 -5.282 6.594 14.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.081 4.081 3 N -0.277 5.277 4 C -0.069 4.069 5 C -0.150 4.150 6 C -0.143 4.143 7 C -0.025 4.025 8 H 0.071 0.929 9 C -0.424 4.424 10 C -0.024 4.024 11 C -0.572 4.572 12 H 0.093 0.907 13 C -0.224 4.224 14 N -0.483 5.483 15 Si 0.939 3.061 16 H -0.196 1.196 17 H -0.185 1.185 18 H -0.184 1.184 19 C -0.047 4.047 20 H 0.079 0.921 21 H 0.074 0.926 22 H 0.094 0.906 23 H 0.085 0.915 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.113 0.887 27 H 0.102 0.898 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -12.280 -4.009 4.921 13.824 hybrid contribution 1.473 -1.672 1.968 2.974 sum -10.807 -5.681 6.890 14.019 Atomic orbital electron populations 1.21752 0.93191 1.02425 1.02344 1.22148 0.97386 0.88162 1.00444 1.61974 1.13769 1.16479 1.35524 1.22142 1.01274 0.94140 0.89309 1.21601 0.95145 0.96205 1.02043 1.21544 0.96133 0.99351 0.97265 1.19531 0.92817 0.93404 0.96729 0.92927 1.22013 0.94941 1.20516 1.04884 1.19926 0.94919 0.93527 0.94002 1.20750 0.96838 1.24973 1.14671 0.90732 1.28692 0.98609 0.97058 0.98070 1.70618 1.04970 1.35222 1.37514 0.82931 0.73222 0.75375 0.74581 1.19583 1.18521 1.18447 1.21935 0.86700 0.97525 0.98532 0.92052 0.92639 0.90626 0.91533 0.94921 0.95382 0.88741 0.89786 0.92189 0.93523 0.94004 0.92108 0.93557 0.91606 0.92980 0.96396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.85 71.98 0.71 -2.12 16 2 C 0.05 1.20 5.68 86.30 0.49 1.69 16 3 N -0.55 -17.93 4.66 -896.35 -4.17 -22.10 16 4 C 0.06 1.65 5.29 86.32 0.46 2.11 16 5 C -0.11 -3.43 6.09 30.64 0.19 -3.24 16 6 C -0.11 -4.06 5.27 30.67 0.16 -3.90 16 7 C -0.01 -0.28 2.43 -11.49 -0.03 -0.31 16 8 H 0.05 2.64 5.38 -2.38 -0.01 2.63 16 9 C -0.40 -20.69 8.94 24.95 0.22 -20.47 16 10 C 0.00 -0.19 9.32 21.98 0.20 0.02 16 11 C -0.54 -30.79 8.64 23.22 0.20 -30.59 16 12 H 0.07 4.18 5.51 -2.91 -0.02 4.17 16 13 C -0.01 -0.73 5.50 85.37 0.47 -0.26 16 14 N -0.86 -49.02 13.59 21.89 0.30 -48.72 16 15 Si 1.12 45.88 29.94 68.60 2.05 47.94 16 16 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 17 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 18 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 19 C 0.08 3.16 4.72 86.33 0.41 3.56 16 20 H 0.06 1.14 6.44 -2.39 -0.02 1.12 16 21 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.07 1.77 7.98 -2.39 -0.02 1.76 16 24 H 0.03 0.81 8.12 -2.39 -0.02 0.79 16 25 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.09 2.18 6.22 -2.38 -0.01 2.16 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 31 H 0.06 3.07 8.06 -2.91 -0.02 3.05 16 32 H 0.05 2.70 6.25 -2.91 -0.02 2.68 16 33 H 0.27 15.86 6.54 -92.71 -0.61 15.25 16 34 H 0.05 2.14 8.01 -2.39 -0.02 2.12 16 35 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -60.81 274.89 2.86 -57.94 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 1.20 Total: 18.46 kcal Atomic # 6 Polarization: -57.00 SS G_CDS: 3.48 Total: -53.51 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: -3.88 Total: -70.82 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.05 Total: 47.94 kcal Total: -60.81 2.86 -57.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260492397.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.240 kcal (2) G-P(sol) polarization free energy of solvation -60.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds