Wall clock time and date at job start Mon Mar 30 2020 02:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35034 * 1 3 3 C 1.40073 * 119.99332 * 2 1 4 4 H 1.08003 * 119.99369 * 154.31055 * 3 2 1 5 5 C 1.40308 * 120.00508 * 334.58799 * 3 2 1 6 6 N 1.30688 * 120.00085 * 161.02305 * 5 3 2 7 7 Si 1.86800 * 119.99531 * 341.02266 * 5 3 2 8 8 H 1.48496 * 109.47390 * 91.54517 * 7 5 3 9 9 H 1.48501 * 109.46791 * 211.54188 * 7 5 3 10 10 H 1.48500 * 109.47218 * 331.54219 * 7 5 3 11 11 C 1.50690 * 120.00253 * 179.97438 * 2 1 3 12 12 C 1.53007 * 109.47139 * 94.05493 * 11 2 1 13 13 H 1.08996 * 109.46231 * 304.17033 * 12 11 2 14 14 C 1.53039 * 109.46015 * 64.13709 * 12 11 2 15 15 C 1.53121 * 109.27657 * 179.19684 * 14 12 11 16 16 C 1.53122 * 109.15996 * 302.34355 * 15 14 12 17 17 C 1.53035 * 109.27537 * 57.65765 * 16 15 14 18 18 N 1.46845 * 109.52475 * 300.81712 * 17 16 15 19 19 C 1.46902 * 111.00275 * 185.84130 * 18 17 16 20 20 H 1.08007 * 119.99705 * 173.91097 * 1 2 3 21 21 H 1.08000 * 120.00486 * 353.90526 * 1 2 3 22 22 H 0.96998 * 119.99720 * 180.02562 * 6 5 3 23 23 H 1.08997 * 109.47425 * 214.05483 * 11 2 1 24 24 H 1.09000 * 109.47857 * 334.05705 * 11 2 1 25 25 H 1.09004 * 109.50312 * 299.13858 * 14 12 11 26 26 H 1.09005 * 109.50397 * 59.25574 * 14 12 11 27 27 H 1.08997 * 109.51942 * 182.44172 * 15 14 12 28 28 H 1.09000 * 109.57333 * 62.28491 * 15 14 12 29 29 H 1.09000 * 109.50189 * 297.71668 * 16 15 14 30 30 H 1.09002 * 109.50088 * 177.59507 * 16 15 14 31 31 H 1.09002 * 109.46400 * 180.80140 * 17 16 15 32 32 H 1.09000 * 109.46333 * 60.83528 * 17 16 15 33 33 H 1.08998 * 109.47084 * 287.81114 * 19 18 17 34 34 H 1.08996 * 109.46970 * 47.80632 * 19 18 17 35 35 H 1.09003 * 109.46986 * 167.80907 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0506 1.2132 0.0000 4 1 3.0505 1.2594 0.4055 5 6 1.4508 2.3695 -0.5214 6 7 1.9167 3.5480 -0.2021 7 14 -0.0136 2.2243 -1.6719 8 1 -1.2702 2.2687 -0.8819 9 1 0.0031 3.3511 -2.6390 10 1 0.0621 0.9376 -2.4096 11 6 2.1039 -1.3050 0.0006 12 6 2.4472 -1.6963 -1.4382 13 1 1.5339 -1.7353 -2.0318 14 6 3.3994 -0.6578 -2.0356 15 6 3.7560 -1.0640 -3.4683 16 6 4.3821 -2.4613 -3.4534 17 6 3.4014 -3.4475 -2.8148 18 7 3.0924 -3.0154 -1.4458 19 6 2.2630 -4.0111 -0.7540 20 1 -0.5400 -0.9301 -0.0992 21 1 -0.5401 0.9300 0.0993 22 1 1.5018 4.3474 -0.5623 23 1 3.0229 -1.1937 0.5760 24 1 1.4854 -2.0816 0.4505 25 1 2.9143 0.3184 -2.0442 26 1 4.3074 -0.6083 -1.4346 27 1 4.4680 -0.3502 -3.8826 28 1 2.8539 -1.0754 -4.0799 29 1 5.3055 -2.4401 -2.8747 30 1 4.5991 -2.7737 -4.4749 31 1 3.8498 -4.4407 -2.7897 32 1 2.4835 -3.4783 -3.4018 33 1 1.2531 -3.9904 -1.1636 34 1 2.6922 -5.0030 -0.8956 35 1 2.2283 -3.7787 0.3104 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260511904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:43 Heat of formation + Delta-G solvation = 0.480535 kcal Electronic energy + Delta-G solvation = -14543.733508 eV Core-core repulsion = 12348.178810 eV Total energy + Delta-G solvation = -2195.554699 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.91541 -35.14067 -33.23677 -32.41199 -30.14406 -26.67274 -25.77699 -24.60053 -22.45882 -21.23857 -19.40943 -18.60852 -15.89608 -15.38785 -15.17242 -14.62614 -14.08251 -13.90206 -13.55362 -12.89772 -12.66648 -12.55142 -12.01186 -11.87734 -11.72811 -11.33054 -11.15764 -10.69310 -10.59785 -10.32024 -10.14309 -9.85494 -9.74808 -9.53141 -9.35387 -8.89953 -7.91737 -7.49039 -6.68713 -4.29147 3.24197 3.35184 3.45662 3.75300 4.25482 4.32159 5.12773 5.20142 5.28991 5.37495 5.52762 5.68384 5.74531 5.86618 5.89484 6.04205 6.08567 6.15744 6.22308 6.31618 6.38607 6.51058 6.59977 6.76744 6.83858 6.93588 7.17391 7.29013 7.43544 7.49781 7.59054 7.88449 8.21504 8.72910 8.94269 9.19771 10.33786 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.036252 B = 0.011015 C = 0.009860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.183481 B = 2541.452689 C = 2839.201930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 C 0.046 3.954 3 C -0.450 4.450 4 H 0.079 0.921 5 C 0.085 3.915 6 N -0.825 5.825 7 Si 0.930 3.070 8 H -0.280 1.280 9 H -0.309 1.309 10 H -0.252 1.252 11 C -0.072 4.072 12 C 0.101 3.899 13 H 0.035 0.965 14 C -0.111 4.111 15 C -0.124 4.124 16 C -0.115 4.115 17 C 0.057 3.943 18 N -0.541 5.541 19 C 0.025 3.975 20 H 0.056 0.944 21 H 0.075 0.925 22 H 0.279 0.721 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.094 0.906 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.026 0.974 33 H 0.022 0.978 34 H 0.058 0.942 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.787 -10.165 -5.892 12.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.483 4.483 2 C 0.043 3.957 3 C -0.479 4.479 4 H 0.097 0.903 5 C -0.132 4.132 6 N -0.450 5.450 7 Si 0.760 3.240 8 H -0.207 1.207 9 H -0.239 1.239 10 H -0.175 1.175 11 C -0.110 4.110 12 C -0.007 4.007 13 H 0.053 0.947 14 C -0.149 4.149 15 C -0.162 4.162 16 C -0.153 4.153 17 C -0.071 4.071 18 N -0.266 5.266 19 C -0.124 4.124 20 H 0.075 0.925 21 H 0.093 0.907 22 H 0.090 0.910 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.112 0.888 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.299 -9.871 -5.634 11.835 hybrid contribution -1.544 0.000 -0.910 1.792 sum 1.755 -9.871 -6.544 11.973 Atomic orbital electron populations 1.23062 0.94730 0.97842 1.32689 1.18631 0.92852 0.92287 0.91881 1.19155 1.02233 0.91196 1.35321 0.90251 1.26224 0.96663 0.94434 0.95853 1.69670 1.39305 0.98921 1.37109 0.85964 0.80945 0.77364 0.79743 1.20744 1.23880 1.17540 1.20696 0.99516 0.96360 0.94401 1.21542 0.94745 0.87274 0.97120 0.94716 1.21724 0.99676 0.99716 0.93751 1.21650 1.00035 0.96077 0.98437 1.21582 0.98974 0.95365 0.99341 1.22043 0.97797 0.98116 0.89120 1.61998 1.45938 1.02911 1.15789 1.22363 0.94993 0.94939 1.00071 0.92530 0.90720 0.91044 0.91823 0.93157 0.88785 0.91648 0.92171 0.92848 0.91312 0.92373 0.91519 0.95572 0.95972 0.92345 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 -11.48 11.36 29.59 0.34 -11.15 16 2 C 0.05 1.17 4.27 -105.08 -0.45 0.72 16 3 C -0.45 -12.31 7.51 -38.12 -0.29 -12.60 16 4 H 0.08 2.28 8.06 -52.48 -0.42 1.85 16 5 C 0.08 2.34 5.38 -17.26 -0.09 2.25 16 6 N -0.82 -23.15 13.92 55.57 0.77 -22.38 16 7 Si 0.93 23.02 24.50 -169.99 -4.16 18.86 16 8 H -0.28 -7.03 6.57 56.52 0.37 -6.66 16 9 H -0.31 -7.39 7.11 56.52 0.40 -6.99 16 10 H -0.25 -6.23 6.94 56.52 0.39 -5.84 16 11 C -0.07 -1.54 4.58 -27.88 -0.13 -1.67 16 12 C 0.10 1.96 1.89 -67.72 -0.13 1.84 16 13 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 14 C -0.11 -2.16 4.86 -26.65 -0.13 -2.28 16 15 C -0.12 -1.99 6.00 -26.61 -0.16 -2.15 16 16 C -0.11 -1.59 6.09 -26.65 -0.16 -1.75 16 17 C 0.06 0.82 5.46 -3.84 -0.02 0.80 16 18 N -0.54 -9.03 4.75 -234.92 -1.12 -10.14 16 19 C 0.02 0.36 8.86 60.07 0.53 0.89 16 20 H 0.06 1.38 8.06 -52.48 -0.42 0.96 16 21 H 0.07 2.04 4.45 -52.49 -0.23 1.80 16 22 H 0.28 7.22 8.29 -40.82 -0.34 6.88 16 23 H 0.06 1.37 8.12 -51.93 -0.42 0.95 16 24 H 0.05 1.01 6.17 -51.93 -0.32 0.69 16 25 H 0.09 2.10 6.10 -51.93 -0.32 1.78 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.83 7.99 -51.93 -0.42 0.41 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.02 0.33 8.10 -51.93 -0.42 -0.09 16 34 H 0.06 0.72 7.94 -51.93 -0.41 0.31 16 35 H 0.07 1.08 6.62 -51.93 -0.34 0.73 16 LS Contribution 266.93 15.07 4.02 4.02 Total: -1.00 -28.09 266.93 -7.03 -35.12 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.86 Total: -0.39 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -0.69 Total: -25.10 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: -0.34 Total: -32.52 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.16 Total: 18.86 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.09 -7.03 -35.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260511904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.604 kcal (2) G-P(sol) polarization free energy of solvation -28.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds