Wall clock time and date at job start Mon Mar 30 2020 02:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35031 * 1 3 3 C 1.40068 * 120.00255 * 2 1 4 4 H 1.08002 * 120.00253 * 153.26911 * 3 2 1 5 5 C 1.40304 * 120.00111 * 333.27081 * 3 2 1 6 6 N 1.30686 * 120.00450 * 163.64857 * 5 3 2 7 7 Si 1.86803 * 119.99862 * 343.64611 * 5 3 2 8 8 H 1.48498 * 109.47112 * 93.37206 * 7 5 3 9 9 H 1.48503 * 109.47408 * 213.36842 * 7 5 3 10 10 H 1.48499 * 109.47269 * 333.36927 * 7 5 3 11 11 C 1.50706 * 119.99885 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.46894 * 95.15702 * 11 2 1 13 13 H 1.09000 * 109.45435 * 55.79720 * 12 11 2 14 14 C 1.53030 * 109.46563 * 295.81893 * 12 11 2 15 15 C 1.53120 * 109.27902 * 180.80361 * 14 12 11 16 16 C 1.53121 * 109.15734 * 57.66111 * 15 14 12 17 17 C 1.53042 * 109.27619 * 302.34072 * 16 15 14 18 18 N 1.46843 * 109.52205 * 59.18197 * 17 16 15 19 19 C 1.46896 * 110.99865 * 174.15761 * 18 17 16 20 20 H 1.08000 * 119.99652 * 358.74614 * 1 2 3 21 21 H 1.07995 * 120.00287 * 178.74845 * 1 2 3 22 22 H 0.97006 * 120.00627 * 180.02562 * 6 5 3 23 23 H 1.09001 * 109.46957 * 335.15717 * 11 2 1 24 24 H 1.09002 * 109.47251 * 215.15806 * 11 2 1 25 25 H 1.08996 * 109.50471 * 300.75083 * 14 12 11 26 26 H 1.09005 * 109.49939 * 60.83053 * 14 12 11 27 27 H 1.09002 * 109.52088 * 177.55901 * 15 14 12 28 28 H 1.08996 * 109.52795 * 297.69084 * 15 14 12 29 29 H 1.09001 * 109.50040 * 182.40928 * 16 15 14 30 30 H 1.08999 * 109.50653 * 62.28629 * 16 15 14 31 31 H 1.08995 * 109.46207 * 299.16594 * 17 16 15 32 32 H 1.08997 * 109.45909 * 179.19775 * 17 16 15 33 33 H 1.09001 * 109.47428 * 68.21714 * 19 18 17 34 34 H 1.09010 * 109.47080 * 188.21592 * 19 18 17 35 35 H 1.08994 * 109.47728 * 308.21042 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0442 1.2630 0.4207 5 6 1.4617 2.3632 -0.5465 6 7 1.9535 3.5425 -0.2723 7 14 -0.0255 2.2088 -1.6662 8 1 -1.2667 2.3442 -0.8622 9 1 0.0165 3.2785 -2.6955 10 1 -0.0088 0.8812 -2.3313 11 6 2.1038 -1.3052 -0.0006 12 6 2.4711 -1.6813 -1.4374 13 1 3.0340 -0.8669 -1.8933 14 6 1.1933 -1.9308 -2.2417 15 6 1.5661 -2.3264 -3.6732 16 6 2.4603 -3.5687 -3.6345 17 6 3.7015 -3.2718 -2.7898 18 7 3.2918 -2.8991 -1.4298 19 6 4.4596 -2.7414 -0.5528 20 1 -0.5399 0.9351 0.0205 21 1 -0.5400 -0.9350 -0.0204 22 1 1.5461 4.3378 -0.6498 23 1 1.4778 -2.0863 0.4308 24 1 3.0131 -1.2000 0.5912 25 1 0.6230 -2.7359 -1.7784 26 1 0.5915 -1.0221 -2.2597 27 1 0.6602 -2.5471 -4.2377 28 1 2.1017 -1.5056 -4.1502 29 1 2.7641 -3.8301 -4.6481 30 1 1.9100 -4.3997 -3.1932 31 1 4.2586 -2.4499 -3.2393 32 1 4.3333 -4.1590 -2.7484 33 1 5.0322 -1.8676 -0.8637 34 1 4.1259 -2.6098 0.4766 35 1 5.0874 -3.6299 -0.6203 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260511907.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:46 Heat of formation + Delta-G solvation = 1.433427 kcal Electronic energy + Delta-G solvation = -14522.049506 eV Core-core repulsion = 12326.536128 eV Total energy + Delta-G solvation = -2195.513378 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.93890 -35.13795 -33.24397 -32.49603 -30.10921 -26.68315 -25.72636 -24.77369 -22.44451 -21.27124 -19.19714 -18.89130 -15.87638 -15.44698 -15.14506 -14.65580 -14.18840 -13.90686 -13.59627 -12.84867 -12.78218 -12.41880 -12.17236 -11.93778 -11.76887 -11.34912 -11.00496 -10.78523 -10.64655 -10.35411 -10.12238 -10.02051 -9.74022 -9.57030 -9.21182 -8.88076 -7.91122 -7.50922 -6.66302 -4.29514 3.24516 3.35456 3.46604 3.73481 4.24530 4.33467 5.10839 5.16679 5.26352 5.32705 5.49996 5.68391 5.78562 5.84875 5.86817 6.02063 6.07324 6.18150 6.21541 6.27041 6.32306 6.45780 6.60599 6.69708 6.74052 6.88096 6.98210 7.31647 7.43095 7.49235 7.57249 7.86808 8.19680 8.73697 8.94036 9.19613 10.37105 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.035748 B = 0.010994 C = 0.009740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.071660 B = 2546.210649 C = 2874.183430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.430 4.430 2 C 0.045 3.955 3 C -0.459 4.459 4 H 0.076 0.924 5 C 0.082 3.918 6 N -0.831 5.831 7 Si 0.931 3.069 8 H -0.281 1.281 9 H -0.311 1.311 10 H -0.243 1.243 11 C -0.071 4.071 12 C 0.099 3.901 13 H 0.045 0.955 14 C -0.115 4.115 15 C -0.123 4.123 16 C -0.114 4.114 17 C 0.056 3.944 18 N -0.542 5.542 19 C 0.023 3.977 20 H 0.071 0.929 21 H 0.062 0.938 22 H 0.279 0.721 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 -10.682 -5.929 12.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.471 4.471 2 C 0.042 3.958 3 C -0.489 4.489 4 H 0.094 0.906 5 C -0.133 4.133 6 N -0.458 5.458 7 Si 0.761 3.239 8 H -0.208 1.208 9 H -0.240 1.240 10 H -0.167 1.167 11 C -0.109 4.109 12 C -0.009 4.009 13 H 0.063 0.937 14 C -0.152 4.152 15 C -0.161 4.161 16 C -0.152 4.152 17 C -0.072 4.072 18 N -0.267 5.267 19 C -0.125 4.125 20 H 0.089 0.911 21 H 0.081 0.919 22 H 0.089 0.911 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.092 0.908 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.007 -10.810 -5.746 12.406 hybrid contribution -0.112 0.861 -0.750 1.147 sum 1.895 -9.949 -6.496 12.032 Atomic orbital electron populations 1.23071 0.94586 0.97425 1.31971 1.18617 0.93004 0.92131 0.92008 1.19172 1.03022 0.91617 1.35055 0.90615 1.26225 0.97096 0.94333 0.95685 1.69648 1.39596 0.98961 1.37556 0.85986 0.80636 0.77977 0.79272 1.20829 1.24048 1.16691 1.20671 0.99462 0.96456 0.94286 1.21522 0.93662 0.88844 0.96847 0.93701 1.21751 0.97323 1.02647 0.93512 1.21620 0.99123 0.97356 0.97989 1.21573 0.96486 0.98663 0.98482 1.22041 0.96577 0.99373 0.89183 1.61986 1.19671 1.35868 1.09176 1.22376 0.92066 0.99636 0.98399 0.91111 0.91915 0.91114 0.92592 0.92434 0.91910 0.89639 0.92328 0.92507 0.92262 0.91413 0.95327 0.91471 0.95694 0.90793 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.43 -10.91 10.11 29.59 0.30 -10.61 16 2 C 0.05 1.14 4.03 -105.07 -0.42 0.72 16 3 C -0.46 -12.88 9.59 -38.12 -0.37 -13.25 16 4 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 5 C 0.08 2.31 5.42 -17.26 -0.09 2.22 16 6 N -0.83 -23.83 13.92 55.57 0.77 -23.05 16 7 Si 0.93 22.95 24.43 -169.99 -4.15 18.80 16 8 H -0.28 -6.99 6.68 56.52 0.38 -6.61 16 9 H -0.31 -7.47 7.11 56.52 0.40 -7.07 16 10 H -0.24 -5.82 5.24 56.52 0.30 -5.53 16 11 C -0.07 -1.52 4.55 -27.88 -0.13 -1.64 16 12 C 0.10 1.92 1.91 -67.72 -0.13 1.79 16 13 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.11 -2.13 4.97 -26.65 -0.13 -2.26 16 15 C -0.12 -1.90 6.00 -26.61 -0.16 -2.06 16 16 C -0.11 -1.53 6.09 -26.65 -0.16 -1.69 16 17 C 0.06 0.81 5.46 -3.83 -0.02 0.79 16 18 N -0.54 -9.00 4.75 -234.93 -1.11 -10.12 16 19 C 0.02 0.35 8.94 60.06 0.54 0.89 16 20 H 0.07 1.89 4.10 -52.49 -0.22 1.68 16 21 H 0.06 1.49 8.05 -52.49 -0.42 1.06 16 22 H 0.28 7.34 8.29 -40.82 -0.34 7.00 16 23 H 0.06 1.16 8.03 -51.93 -0.42 0.74 16 24 H 0.06 1.20 6.15 -51.93 -0.32 0.88 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.09 1.81 5.05 -51.93 -0.26 1.55 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.83 8.04 -51.93 -0.42 0.41 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 1.13 6.37 -51.92 -0.33 0.80 16 35 H 0.06 0.74 8.02 -51.93 -0.42 0.32 16 LS Contribution 264.48 15.07 3.99 3.99 Total: -1.00 -28.49 264.48 -7.15 -35.64 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.87 Total: -0.13 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: -0.78 Total: -25.12 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: -0.34 Total: -33.17 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.15 Total: 18.80 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.49 -7.15 -35.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260511907.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.074 kcal (2) G-P(sol) polarization free energy of solvation -28.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds