Wall clock time and date at job start Mon Mar 30 2020 02:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35031 * 1 3 3 C 1.40068 * 120.00255 * 2 1 4 4 H 1.08002 * 120.00253 * 153.26911 * 3 2 1 5 5 C 1.40304 * 120.00111 * 333.27081 * 3 2 1 6 6 N 1.30686 * 120.00450 * 163.64857 * 5 3 2 7 7 Si 1.86803 * 119.99862 * 343.64611 * 5 3 2 8 8 H 1.48498 * 109.47112 * 93.37206 * 7 5 3 9 9 H 1.48503 * 109.47408 * 213.36842 * 7 5 3 10 10 H 1.48499 * 109.47269 * 333.36927 * 7 5 3 11 11 C 1.50706 * 119.99885 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.46894 * 95.15702 * 11 2 1 13 13 H 1.09000 * 109.45435 * 55.79720 * 12 11 2 14 14 C 1.53030 * 109.46563 * 295.81893 * 12 11 2 15 15 C 1.53120 * 109.27902 * 180.80361 * 14 12 11 16 16 C 1.53121 * 109.15734 * 57.66111 * 15 14 12 17 17 C 1.53042 * 109.27619 * 302.34072 * 16 15 14 18 18 N 1.46843 * 109.52205 * 59.18197 * 17 16 15 19 19 C 1.46896 * 110.99865 * 174.15761 * 18 17 16 20 20 H 1.08000 * 119.99652 * 358.74614 * 1 2 3 21 21 H 1.07995 * 120.00287 * 178.74845 * 1 2 3 22 22 H 0.97006 * 120.00627 * 180.02562 * 6 5 3 23 23 H 1.09001 * 109.46957 * 335.15717 * 11 2 1 24 24 H 1.09002 * 109.47251 * 215.15806 * 11 2 1 25 25 H 1.08996 * 109.50471 * 300.75083 * 14 12 11 26 26 H 1.09005 * 109.49939 * 60.83053 * 14 12 11 27 27 H 1.09002 * 109.52088 * 177.55901 * 15 14 12 28 28 H 1.08996 * 109.52795 * 297.69084 * 15 14 12 29 29 H 1.09001 * 109.50040 * 182.40928 * 16 15 14 30 30 H 1.08999 * 109.50653 * 62.28629 * 16 15 14 31 31 H 1.08995 * 109.46207 * 299.16594 * 17 16 15 32 32 H 1.08997 * 109.45909 * 179.19775 * 17 16 15 33 33 H 1.09001 * 109.47428 * 68.21714 * 19 18 17 34 34 H 1.09010 * 109.47080 * 188.21592 * 19 18 17 35 35 H 1.08994 * 109.47728 * 308.21042 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0442 1.2630 0.4207 5 6 1.4617 2.3632 -0.5465 6 7 1.9535 3.5425 -0.2723 7 14 -0.0255 2.2088 -1.6662 8 1 -1.2667 2.3442 -0.8622 9 1 0.0165 3.2785 -2.6955 10 1 -0.0088 0.8812 -2.3313 11 6 2.1038 -1.3052 -0.0006 12 6 2.4711 -1.6813 -1.4374 13 1 3.0340 -0.8669 -1.8933 14 6 1.1933 -1.9308 -2.2417 15 6 1.5661 -2.3264 -3.6732 16 6 2.4603 -3.5687 -3.6345 17 6 3.7015 -3.2718 -2.7898 18 7 3.2918 -2.8991 -1.4298 19 6 4.4596 -2.7414 -0.5528 20 1 -0.5399 0.9351 0.0205 21 1 -0.5400 -0.9350 -0.0204 22 1 1.5461 4.3378 -0.6498 23 1 1.4778 -2.0863 0.4308 24 1 3.0131 -1.2000 0.5912 25 1 0.6230 -2.7359 -1.7784 26 1 0.5915 -1.0221 -2.2597 27 1 0.6602 -2.5471 -4.2377 28 1 2.1017 -1.5056 -4.1502 29 1 2.7641 -3.8301 -4.6481 30 1 1.9100 -4.3997 -3.1932 31 1 4.2586 -2.4499 -3.2393 32 1 4.3333 -4.1590 -2.7484 33 1 5.0322 -1.8676 -0.8637 34 1 4.1259 -2.6098 0.4766 35 1 5.0874 -3.6299 -0.6203 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260511907.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:46 Heat of formation + Delta-G solvation = -16.793068 kcal Electronic energy + Delta-G solvation = -14522.839866 eV Core-core repulsion = 12326.536128 eV Total energy + Delta-G solvation = -2196.303738 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.31795 -37.03473 -34.57520 -34.36436 -31.73729 -28.10383 -27.16613 -26.88639 -23.72982 -22.72224 -20.87664 -20.51154 -17.88743 -17.21448 -16.72863 -16.07841 -15.63357 -15.27063 -15.03811 -14.69596 -14.38756 -14.03805 -13.69924 -13.57945 -13.19922 -12.68116 -12.57479 -12.43980 -12.36262 -11.89611 -11.67403 -11.60514 -11.56183 -11.12325 -11.02849 -10.82614 -9.54849 -9.24955 -8.80906 -6.49013 1.23804 1.33660 1.48623 1.72657 2.20699 2.94608 3.21351 3.91359 3.99683 4.03745 4.20711 4.41288 4.52729 4.57343 4.58025 4.67209 4.71749 4.78034 4.93815 4.97378 5.03525 5.10110 5.13741 5.16917 5.28922 5.31107 5.35802 5.42382 5.53399 5.73523 5.98855 6.18465 6.25951 6.60409 6.84070 7.07213 8.27178 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.035748 B = 0.010994 C = 0.009740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.071660 B = 2546.210649 C = 2874.183430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.420 4.420 2 C 0.042 3.958 3 C -0.485 4.485 4 H 0.045 0.955 5 C 0.042 3.958 6 N -0.867 5.867 7 Si 0.978 3.022 8 H -0.281 1.281 9 H -0.298 1.298 10 H -0.234 1.234 11 C -0.066 4.066 12 C 0.107 3.893 13 H 0.014 0.986 14 C -0.114 4.114 15 C -0.123 4.123 16 C -0.108 4.108 17 C 0.051 3.949 18 N -0.543 5.543 19 C 0.022 3.978 20 H 0.058 0.942 21 H 0.083 0.917 22 H 0.287 0.713 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.021 0.979 32 H 0.094 0.906 33 H 0.012 0.988 34 H 0.066 0.934 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.649 -12.952 -7.259 14.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 C 0.039 3.961 3 C -0.515 4.515 4 H 0.063 0.937 5 C -0.171 4.171 6 N -0.495 5.495 7 Si 0.805 3.195 8 H -0.208 1.208 9 H -0.227 1.227 10 H -0.157 1.157 11 C -0.104 4.104 12 C -0.001 4.001 13 H 0.032 0.968 14 C -0.152 4.152 15 C -0.160 4.160 16 C -0.146 4.146 17 C -0.077 4.077 18 N -0.267 5.267 19 C -0.126 4.126 20 H 0.076 0.924 21 H 0.101 0.899 22 H 0.097 0.903 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.039 0.961 32 H 0.113 0.887 33 H 0.031 0.969 34 H 0.085 0.915 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.452 -13.090 -7.076 14.951 hybrid contribution 0.106 1.542 -0.267 1.568 sum 1.557 -11.549 -7.343 13.773 Atomic orbital electron populations 1.23199 0.94534 0.97768 1.30532 1.18825 0.93342 0.92872 0.91055 1.19288 1.02280 0.93384 1.36566 0.93687 1.26953 0.99523 0.93976 0.96603 1.69684 1.41280 0.99703 1.38864 0.85254 0.77534 0.78738 0.77932 1.20816 1.22725 1.15691 1.20625 0.99061 0.94663 0.96066 1.21296 0.94456 0.89294 0.95089 0.96842 1.21689 0.96337 1.01428 0.95703 1.21629 1.00417 0.98201 0.95801 1.21567 0.95515 0.97512 0.99974 1.22222 0.97525 1.00118 0.87784 1.62015 1.20174 1.33604 1.10936 1.22442 0.91863 1.00613 0.97709 0.92410 0.89867 0.90294 0.91504 0.92625 0.91308 0.92585 0.90527 0.93379 0.89446 0.90795 0.96106 0.88741 0.96930 0.91482 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.42 -20.87 10.11 67.08 0.68 -20.19 16 2 C 0.04 2.11 4.03 -20.16 -0.08 2.03 16 3 C -0.48 -28.05 9.59 23.22 0.22 -27.83 16 4 H 0.04 2.80 8.06 -2.91 -0.02 2.77 16 5 C 0.04 2.37 5.42 85.37 0.46 2.84 16 6 N -0.87 -50.91 13.92 21.89 0.30 -50.60 16 7 Si 0.98 47.09 24.43 68.60 1.68 48.76 16 8 H -0.28 -13.49 6.68 99.48 0.66 -12.82 16 9 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 10 H -0.23 -10.81 5.24 99.48 0.52 -10.29 16 11 C -0.07 -2.82 4.55 29.85 0.14 -2.68 16 12 C 0.11 4.08 1.91 44.93 0.09 4.16 16 13 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 14 C -0.11 -4.04 4.97 30.64 0.15 -3.89 16 15 C -0.12 -3.48 6.00 30.68 0.18 -3.29 16 16 C -0.11 -2.49 6.09 30.65 0.19 -2.31 16 17 C 0.05 1.30 5.46 86.33 0.47 1.77 16 18 N -0.54 -16.91 4.75 -897.20 -4.26 -21.17 16 19 C 0.02 0.62 8.94 127.69 1.14 1.76 16 20 H 0.06 3.03 4.10 -2.91 -0.01 3.02 16 21 H 0.08 3.76 8.05 -2.91 -0.02 3.74 16 22 H 0.29 15.36 8.29 -92.70 -0.77 14.59 16 23 H 0.07 2.67 8.03 -2.39 -0.02 2.65 16 24 H 0.06 2.35 6.15 -2.39 -0.01 2.33 16 25 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.06 2.30 5.05 -2.38 -0.01 2.29 16 27 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 1.93 8.04 -2.39 -0.02 1.92 16 33 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.07 1.98 6.37 -2.38 -0.02 1.97 16 35 H 0.09 1.99 8.02 -2.39 -0.02 1.97 16 Total: -1.00 -61.39 264.48 2.17 -59.21 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.81 Total: 11.43 kcal Atomic # 6 Polarization: -51.27 SS G_CDS: 3.64 Total: -47.63 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -3.95 Total: -71.78 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.68 Total: 48.76 kcal Total: -61.39 2.17 -59.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260511907.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.420 kcal (2) G-P(sol) polarization free energy of solvation -61.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds