Wall clock time and date at job start Mon Mar 30 2020 02:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35032 * 1 3 3 C 1.40076 * 120.00400 * 2 1 4 4 H 1.07998 * 120.00041 * 144.19601 * 3 2 1 5 5 C 1.40306 * 119.99575 * 324.19534 * 3 2 1 6 6 N 1.30690 * 120.00198 * 349.12791 * 5 3 2 7 7 Si 1.86801 * 119.99583 * 169.12199 * 5 3 2 8 8 H 1.48498 * 109.47206 * 90.00532 * 7 5 3 9 9 H 1.48502 * 109.47082 * 210.00115 * 7 5 3 10 10 H 1.48499 * 109.47294 * 329.99942 * 7 5 3 11 11 C 1.50704 * 119.99647 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47047 * 95.00438 * 11 2 1 13 13 H 1.09000 * 109.50203 * 304.92149 * 12 11 2 14 14 C 1.53112 * 109.50282 * 184.80038 * 12 11 2 15 15 C 1.53120 * 109.16072 * 182.40351 * 14 12 11 16 16 C 1.53040 * 109.27824 * 57.65325 * 15 14 12 17 17 N 1.46843 * 109.51634 * 300.81640 * 16 15 14 18 18 C 1.46900 * 110.99254 * 185.84549 * 17 16 15 19 19 C 1.46851 * 111.19785 * 61.75855 * 17 16 15 20 20 H 1.08001 * 119.99857 * 354.40143 * 1 2 3 21 21 H 1.07996 * 119.99997 * 174.39944 * 1 2 3 22 22 H 0.96998 * 119.99671 * 179.97438 * 6 5 3 23 23 H 1.08996 * 109.47453 * 335.00388 * 11 2 1 24 24 H 1.09004 * 109.46928 * 214.99894 * 11 2 1 25 25 H 1.09001 * 109.52716 * 302.31042 * 14 12 11 26 26 H 1.09001 * 109.52642 * 62.43879 * 14 12 11 27 27 H 1.09001 * 109.50353 * 177.59796 * 15 14 12 28 28 H 1.09004 * 109.50236 * 297.67351 * 15 14 12 29 29 H 1.08999 * 109.46078 * 60.83968 * 16 15 14 30 30 H 1.09000 * 109.46223 * 180.81553 * 16 15 14 31 31 H 1.08995 * 109.47433 * 295.80058 * 18 17 16 32 32 H 1.09001 * 109.46394 * 55.79743 * 18 17 16 33 33 H 1.09002 * 109.46836 * 175.79930 * 18 17 16 34 34 H 1.08991 * 109.46363 * 178.23262 * 19 17 16 35 35 H 1.09001 * 109.46133 * 58.24972 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0508 1.2130 0.0000 4 1 2.9777 1.3014 0.5472 5 6 1.5481 2.3133 -0.7109 6 7 0.5505 2.1550 -1.5402 7 14 2.3048 4.0044 -0.4718 8 1 3.4089 4.1949 -1.4463 9 1 1.2683 5.0456 -0.6884 10 1 2.8385 4.1171 0.9094 11 6 2.1038 -1.3052 0.0006 12 6 2.4677 -1.6846 -1.4363 13 1 1.5650 -1.7057 -2.0468 14 6 3.1268 -3.0665 -1.4487 15 6 3.5419 -3.4125 -2.8814 16 6 4.4882 -2.3313 -3.4083 17 7 3.8108 -1.0288 -3.3769 18 6 4.6387 0.0102 -4.0039 19 6 3.4452 -0.6534 -2.0051 20 1 -0.5400 0.9309 0.0912 21 1 -0.5400 -0.9308 -0.0913 22 1 0.2028 2.9158 -2.0313 23 1 1.4788 -2.0853 0.4352 24 1 3.0145 -1.1987 0.5900 25 1 4.0077 -3.0559 -0.8068 26 1 2.4191 -3.8110 -1.0838 27 1 4.0501 -4.3767 -2.8903 28 1 2.6563 -3.4620 -3.5150 29 1 5.3797 -2.2924 -2.7824 30 1 4.7742 -2.5670 -4.4334 31 1 5.5514 0.1468 -3.4239 32 1 4.8953 -0.2932 -5.0189 33 1 4.0837 0.9478 -4.0342 34 1 2.9737 0.3293 -2.0108 35 1 4.3416 -0.6226 -1.3858 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260512122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:03 Heat of formation + Delta-G solvation = -2.395709 kcal Electronic energy + Delta-G solvation = -14467.625997 eV Core-core repulsion = 12271.946575 eV Total energy + Delta-G solvation = -2195.679422 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.62069 -35.18843 -33.27532 -31.71531 -29.55189 -26.33408 -25.46777 -24.58360 -22.27159 -21.14738 -19.18953 -18.50402 -15.55494 -15.24107 -14.83711 -14.60807 -14.04662 -13.89914 -13.35662 -12.62885 -12.47679 -12.14155 -12.00075 -11.64027 -11.47525 -11.14491 -11.02346 -10.80784 -10.55603 -10.36093 -10.13203 -9.85261 -9.68612 -9.39478 -9.04269 -8.75855 -7.77350 -7.01671 -6.30758 -4.01533 3.13405 3.24649 3.29118 4.14901 4.29741 4.48295 5.21648 5.31944 5.37328 5.51198 5.67565 5.78810 5.85188 5.95082 6.01506 6.16033 6.23489 6.27425 6.39133 6.44346 6.51065 6.67823 6.74131 6.86403 7.11346 7.23141 7.34264 7.48334 7.67352 7.68839 7.72677 8.30592 8.51031 9.10526 9.35285 9.52951 10.70676 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.031176 B = 0.011418 C = 0.009213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.902485 B = 2451.611252 C = 3038.609839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C 0.036 3.964 3 C -0.478 4.478 4 H 0.057 0.943 5 C 0.078 3.922 6 N -0.811 5.811 7 Si 0.887 3.113 8 H -0.276 1.276 9 H -0.281 1.281 10 H -0.267 1.267 11 C -0.074 4.074 12 C -0.064 4.064 13 H 0.073 0.927 14 C -0.119 4.119 15 C -0.114 4.114 16 C 0.056 3.944 17 N -0.545 5.545 18 C 0.030 3.970 19 C 0.064 3.936 20 H 0.079 0.921 21 H 0.040 0.960 22 H 0.269 0.731 23 H 0.043 0.957 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.063 0.937 31 H 0.018 0.982 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.003 -5.898 -3.385 9.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.363 4.363 2 C 0.034 3.966 3 C -0.511 4.511 4 H 0.076 0.924 5 C -0.135 4.135 6 N -0.439 5.439 7 Si 0.713 3.287 8 H -0.202 1.202 9 H -0.207 1.207 10 H -0.191 1.191 11 C -0.113 4.113 12 C -0.083 4.083 13 H 0.092 0.908 14 C -0.156 4.156 15 C -0.152 4.152 16 C -0.072 4.072 17 N -0.269 5.269 18 C -0.119 4.119 19 C -0.063 4.063 20 H 0.097 0.903 21 H 0.059 0.941 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.130 0.870 35 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 6.446 -5.819 -3.822 9.488 hybrid contribution 1.106 1.010 0.399 1.550 sum 7.552 -4.809 -3.423 9.585 Atomic orbital electron populations 1.23288 0.94763 0.96954 1.21334 1.18327 0.92957 0.91029 0.94245 1.18940 1.07399 0.95477 1.29275 0.92448 1.25647 0.94537 0.99437 0.93914 1.69784 1.22568 1.31229 1.20350 0.86678 0.79290 0.83327 0.79373 1.20151 1.20684 1.19127 1.20700 0.98785 0.97438 0.94341 1.20980 0.98257 0.92096 0.96994 0.90836 1.21724 0.99987 0.98170 0.95766 1.21558 0.99646 0.96728 0.97292 1.22049 0.94996 0.90567 0.99611 1.61952 1.42161 1.01720 1.21053 1.22275 0.95433 0.96003 0.98153 1.22342 0.96960 1.01876 0.85087 0.90282 0.94110 0.92056 0.93849 0.93658 0.92928 0.92429 0.92443 0.91351 0.95759 0.91812 0.96378 0.92337 0.91195 0.87038 0.96306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.32 -8.90 12.84 29.59 0.38 -8.52 16 2 C 0.04 0.94 4.54 -105.07 -0.48 0.46 16 3 C -0.48 -12.95 6.95 -38.12 -0.26 -13.22 16 4 H 0.06 1.53 7.87 -52.49 -0.41 1.11 16 5 C 0.08 2.09 5.02 -17.26 -0.09 2.00 16 6 N -0.81 -22.60 11.43 55.57 0.64 -21.97 16 7 Si 0.89 20.14 29.58 -169.99 -5.03 15.11 16 8 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 C -0.07 -1.65 4.86 -27.88 -0.14 -1.79 16 12 C -0.06 -1.32 2.34 -90.54 -0.21 -1.53 16 13 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 14 C -0.12 -1.96 5.29 -26.61 -0.14 -2.10 16 15 C -0.11 -1.69 6.09 -26.65 -0.16 -1.86 16 16 C 0.06 0.87 5.46 -3.83 -0.02 0.84 16 17 N -0.54 -10.06 4.91 -242.96 -1.19 -11.25 16 18 C 0.03 0.49 9.59 60.06 0.58 1.06 16 19 C 0.06 1.34 4.26 -3.83 -0.02 1.32 16 20 H 0.08 2.33 6.87 -52.49 -0.36 1.97 16 21 H 0.04 1.06 8.06 -52.49 -0.42 0.64 16 22 H 0.27 7.00 8.29 -40.82 -0.34 6.67 16 23 H 0.04 0.91 8.04 -51.93 -0.42 0.49 16 24 H 0.04 0.97 8.12 -51.93 -0.42 0.55 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.11 2.76 5.94 -51.93 -0.31 2.45 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 277.13 15.07 4.18 4.18 Total: -1.00 -28.11 277.13 -8.09 -36.20 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.12 Total: 1.05 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: -0.56 Total: -23.32 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: -0.56 Total: -33.22 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.11 -8.09 -36.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260512122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.807 kcal (2) G-P(sol) polarization free energy of solvation -28.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds