Wall clock time and date at job start Mon Mar 30 2020 02:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35032 * 1 3 3 C 1.40076 * 120.00400 * 2 1 4 4 H 1.07998 * 120.00041 * 144.19601 * 3 2 1 5 5 C 1.40306 * 119.99575 * 324.19534 * 3 2 1 6 6 N 1.30690 * 120.00198 * 349.12791 * 5 3 2 7 7 Si 1.86801 * 119.99583 * 169.12199 * 5 3 2 8 8 H 1.48498 * 109.47206 * 90.00532 * 7 5 3 9 9 H 1.48502 * 109.47082 * 210.00115 * 7 5 3 10 10 H 1.48499 * 109.47294 * 329.99942 * 7 5 3 11 11 C 1.50704 * 119.99647 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47047 * 95.00438 * 11 2 1 13 13 H 1.09000 * 109.50203 * 304.92149 * 12 11 2 14 14 C 1.53112 * 109.50282 * 184.80038 * 12 11 2 15 15 C 1.53120 * 109.16072 * 182.40351 * 14 12 11 16 16 C 1.53040 * 109.27824 * 57.65325 * 15 14 12 17 17 N 1.46843 * 109.51634 * 300.81640 * 16 15 14 18 18 C 1.46900 * 110.99254 * 185.84549 * 17 16 15 19 19 C 1.46851 * 111.19785 * 61.75855 * 17 16 15 20 20 H 1.08001 * 119.99857 * 354.40143 * 1 2 3 21 21 H 1.07996 * 119.99997 * 174.39944 * 1 2 3 22 22 H 0.96998 * 119.99671 * 179.97438 * 6 5 3 23 23 H 1.08996 * 109.47453 * 335.00388 * 11 2 1 24 24 H 1.09004 * 109.46928 * 214.99894 * 11 2 1 25 25 H 1.09001 * 109.52716 * 302.31042 * 14 12 11 26 26 H 1.09001 * 109.52642 * 62.43879 * 14 12 11 27 27 H 1.09001 * 109.50353 * 177.59796 * 15 14 12 28 28 H 1.09004 * 109.50236 * 297.67351 * 15 14 12 29 29 H 1.08999 * 109.46078 * 60.83968 * 16 15 14 30 30 H 1.09000 * 109.46223 * 180.81553 * 16 15 14 31 31 H 1.08995 * 109.47433 * 295.80058 * 18 17 16 32 32 H 1.09001 * 109.46394 * 55.79743 * 18 17 16 33 33 H 1.09002 * 109.46836 * 175.79930 * 18 17 16 34 34 H 1.08991 * 109.46363 * 178.23262 * 19 17 16 35 35 H 1.09001 * 109.46133 * 58.24972 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0508 1.2130 0.0000 4 1 2.9777 1.3014 0.5472 5 6 1.5481 2.3133 -0.7109 6 7 0.5505 2.1550 -1.5402 7 14 2.3048 4.0044 -0.4718 8 1 3.4089 4.1949 -1.4463 9 1 1.2683 5.0456 -0.6884 10 1 2.8385 4.1171 0.9094 11 6 2.1038 -1.3052 0.0006 12 6 2.4677 -1.6846 -1.4363 13 1 1.5650 -1.7057 -2.0468 14 6 3.1268 -3.0665 -1.4487 15 6 3.5419 -3.4125 -2.8814 16 6 4.4882 -2.3313 -3.4083 17 7 3.8108 -1.0288 -3.3769 18 6 4.6387 0.0102 -4.0039 19 6 3.4452 -0.6534 -2.0051 20 1 -0.5400 0.9309 0.0912 21 1 -0.5400 -0.9308 -0.0913 22 1 0.2028 2.9158 -2.0313 23 1 1.4788 -2.0853 0.4352 24 1 3.0145 -1.1987 0.5900 25 1 4.0077 -3.0559 -0.8068 26 1 2.4191 -3.8110 -1.0838 27 1 4.0501 -4.3767 -2.8903 28 1 2.6563 -3.4620 -3.5150 29 1 5.3797 -2.2924 -2.7824 30 1 4.7742 -2.5670 -4.4334 31 1 5.5514 0.1468 -3.4239 32 1 4.8953 -0.2932 -5.0189 33 1 4.0837 0.9478 -4.0342 34 1 2.9737 0.3293 -2.0108 35 1 4.3416 -0.6226 -1.3858 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260512122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:03 Heat of formation + Delta-G solvation = -19.103422 kcal Electronic energy + Delta-G solvation = -14468.350498 eV Core-core repulsion = 12271.946575 eV Total energy + Delta-G solvation = -2196.403923 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.08987 -37.06296 -34.93179 -33.36795 -31.29910 -27.83184 -27.24278 -26.51388 -23.68331 -22.68265 -20.83571 -20.32590 -17.65261 -16.80879 -16.60438 -16.09578 -15.44129 -15.30551 -15.04038 -14.41814 -14.01940 -13.66538 -13.65210 -13.23807 -13.04208 -12.87604 -12.76649 -12.33389 -12.25240 -11.93089 -11.77976 -11.47291 -11.39158 -11.13464 -10.94712 -10.72604 -9.17794 -9.12981 -8.38521 -6.18102 1.30696 1.37903 1.49059 2.11585 2.32338 3.09934 3.34350 4.00052 4.03646 4.07804 4.25527 4.46004 4.54088 4.62388 4.70598 4.74252 4.82736 4.90257 4.96288 4.97833 5.08673 5.12665 5.19828 5.25956 5.33762 5.36221 5.51046 5.58597 5.68266 6.11634 6.22418 6.32701 6.34696 6.98010 7.21839 7.43973 8.64175 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.031176 B = 0.011418 C = 0.009213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.902485 B = 2451.611252 C = 3038.609839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.354 4.354 2 C 0.036 3.964 3 C -0.497 4.497 4 H 0.059 0.941 5 C 0.036 3.964 6 N -0.841 5.841 7 Si 0.956 3.044 8 H -0.265 1.265 9 H -0.276 1.276 10 H -0.261 1.261 11 C -0.072 4.072 12 C -0.059 4.059 13 H 0.041 0.959 14 C -0.112 4.112 15 C -0.111 4.111 16 C 0.054 3.946 17 N -0.563 5.563 18 C 0.030 3.970 19 C 0.076 3.924 20 H 0.050 0.950 21 H 0.047 0.953 22 H 0.273 0.727 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.088 0.912 31 H 0.025 0.975 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.061 -6.699 -3.870 11.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.394 4.394 2 C 0.034 3.966 3 C -0.530 4.530 4 H 0.077 0.923 5 C -0.176 4.176 6 N -0.470 5.470 7 Si 0.779 3.221 8 H -0.190 1.190 9 H -0.201 1.201 10 H -0.185 1.185 11 C -0.110 4.110 12 C -0.078 4.078 13 H 0.060 0.940 14 C -0.150 4.150 15 C -0.149 4.149 16 C -0.074 4.074 17 N -0.288 5.288 18 C -0.118 4.118 19 C -0.052 4.052 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.106 0.894 31 H 0.044 0.956 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.507 -6.634 -4.308 11.617 hybrid contribution 0.474 1.268 0.511 1.447 sum 8.981 -5.367 -3.797 11.131 Atomic orbital electron populations 1.23102 0.95400 0.95908 1.24993 1.18762 0.92915 0.93058 0.91831 1.19192 1.07569 0.96468 1.29744 0.92319 1.26471 0.94749 1.03210 0.93124 1.69891 1.23745 1.32579 1.20779 0.85604 0.78679 0.78183 0.79612 1.18993 1.20125 1.18520 1.20674 0.98692 0.95543 0.96053 1.20860 0.97282 0.94825 0.94844 0.94014 1.21664 1.00302 0.95416 0.97617 1.21577 0.99579 0.98197 0.95529 1.22187 0.95024 0.88801 1.01357 1.61916 1.43933 1.03665 1.19288 1.22300 0.94985 0.94820 0.99678 1.22007 0.96524 0.99768 0.86905 0.93117 0.93470 0.91662 0.92788 0.92750 0.91807 0.91182 0.88875 0.92228 0.95014 0.89407 0.95596 0.89517 0.93295 0.91558 0.96381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.35 -20.29 12.84 67.08 0.86 -19.43 16 2 C 0.04 1.93 4.54 -20.15 -0.09 1.84 16 3 C -0.50 -27.45 6.95 23.22 0.16 -27.29 16 4 H 0.06 3.15 7.87 -2.91 -0.02 3.13 16 5 C 0.04 1.95 5.02 85.37 0.43 2.38 16 6 N -0.84 -48.25 11.43 21.89 0.25 -48.00 16 7 Si 0.96 41.55 29.58 68.60 2.03 43.58 16 8 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 9 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 11 C -0.07 -3.17 4.86 29.85 0.15 -3.03 16 12 C -0.06 -2.40 2.34 -10.74 -0.03 -2.43 16 13 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 14 C -0.11 -3.43 5.29 30.67 0.16 -3.27 16 15 C -0.11 -2.92 6.09 30.65 0.19 -2.73 16 16 C 0.05 1.49 5.46 86.33 0.47 1.96 16 17 N -0.56 -20.09 4.91 -922.59 -4.53 -24.62 16 18 C 0.03 0.94 9.59 127.69 1.22 2.17 16 19 C 0.08 3.15 4.26 86.33 0.37 3.52 16 20 H 0.05 3.14 6.87 -2.91 -0.02 3.12 16 21 H 0.05 2.55 8.06 -2.91 -0.02 2.53 16 22 H 0.27 14.58 8.29 -92.71 -0.77 13.81 16 23 H 0.05 2.24 8.04 -2.39 -0.02 2.22 16 24 H 0.05 2.29 8.12 -2.38 -0.02 2.27 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 2.03 8.08 -2.39 -0.02 2.01 16 31 H 0.03 0.75 8.14 -2.39 -0.02 0.74 16 32 H 0.09 2.18 8.09 -2.39 -0.02 2.16 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 3.37 5.94 -2.39 -0.01 3.36 16 35 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -61.93 277.13 2.66 -59.27 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 1.02 Total: 16.07 kcal Atomic # 6 Polarization: -50.20 SS G_CDS: 3.89 Total: -46.31 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -4.28 Total: -72.61 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -61.93 2.66 -59.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260512122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.171 kcal (2) G-P(sol) polarization free energy of solvation -61.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds