Wall clock time and date at job start Mon Mar 30 2020 02:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35036 * 1 3 3 C 1.40070 * 119.99742 * 2 1 4 4 H 1.08002 * 119.99379 * 153.86704 * 3 2 1 5 5 C 1.40305 * 120.00378 * 333.87139 * 3 2 1 6 6 N 1.30688 * 119.99691 * 339.75571 * 5 3 2 7 7 Si 1.86799 * 120.00140 * 159.76376 * 5 3 2 8 8 H 1.48490 * 109.47437 * 84.97939 * 7 5 3 9 9 H 1.48499 * 109.47039 * 204.98469 * 7 5 3 10 10 H 1.48505 * 109.46956 * 324.97858 * 7 5 3 11 11 C 1.50704 * 119.99862 * 180.02562 * 2 1 3 12 12 C 1.53119 * 109.52073 * 120.00116 * 11 2 1 13 13 C 1.53041 * 109.27679 * 177.56076 * 12 11 2 14 14 N 1.46842 * 109.51868 * 300.81685 * 13 12 11 15 15 C 1.46910 * 110.99776 * 185.84019 * 14 13 12 16 16 C 1.52999 * 109.47132 * 170.00284 * 15 14 13 17 17 C 1.46849 * 111.19841 * 61.74670 * 14 13 12 18 18 C 1.53032 * 109.52082 * 298.25306 * 17 14 13 19 19 H 1.08002 * 120.00064 * 353.94156 * 1 2 3 20 20 H 1.07998 * 120.00160 * 173.93896 * 1 2 3 21 21 H 0.97007 * 120.00064 * 180.02562 * 6 5 3 22 22 H 1.09000 * 109.51935 * 359.87392 * 11 2 1 23 23 H 1.08997 * 109.50507 * 57.61401 * 12 11 2 24 24 H 1.09005 * 109.53391 * 297.51933 * 12 11 2 25 25 H 1.08997 * 109.45977 * 180.80261 * 13 12 11 26 26 H 1.08994 * 109.45314 * 60.83223 * 13 12 11 27 27 H 1.09002 * 109.47159 * 290.00128 * 15 14 13 28 28 H 1.08996 * 109.46693 * 49.99909 * 15 14 13 29 29 H 1.09002 * 109.46972 * 299.99959 * 16 15 14 30 30 H 1.09003 * 109.47427 * 59.99544 * 16 15 14 31 31 H 1.08997 * 109.47106 * 180.02562 * 16 15 14 32 32 H 1.08998 * 109.46176 * 58.27001 * 17 14 13 33 33 H 1.09007 * 109.46052 * 178.23922 * 17 14 13 34 34 H 1.08997 * 109.50737 * 299.23831 * 18 17 14 35 35 H 1.09001 * 109.50456 * 179.11988 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3504 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 3.0479 1.2608 0.4120 5 6 1.4567 2.3661 -0.5351 6 7 0.4568 2.2587 -1.3697 7 14 2.0952 4.0545 -0.0547 8 1 3.2440 4.4151 -0.9238 9 1 1.0139 5.0586 -0.2216 10 1 2.5353 4.0322 1.3635 11 6 2.1039 -1.3052 -0.0006 12 6 2.9846 -1.3869 -1.2504 13 6 3.7926 -2.6861 -1.2150 14 7 4.6247 -2.7136 -0.0054 15 6 5.5167 -3.8809 -0.0064 16 6 6.5331 -3.7471 1.1294 17 6 3.7984 -2.6838 1.2082 18 6 2.9906 -1.3846 1.2451 19 1 -0.5400 0.9301 0.0987 20 1 -0.5400 -0.9300 -0.0988 21 1 0.0463 3.0559 -1.7400 22 1 1.3962 -2.1342 0.0013 23 1 3.6650 -0.5356 -1.2725 24 1 2.3560 -1.3735 -2.1408 25 1 4.4314 -2.7406 -2.0965 26 1 3.1116 -3.5371 -1.2069 27 1 4.9289 -4.7875 0.1370 28 1 6.0422 -3.9356 -0.9598 29 1 7.1209 -2.8404 0.9859 30 1 6.0075 -3.6922 2.0827 31 1 7.1952 -4.6129 1.1283 32 1 3.1175 -3.5349 1.2050 33 1 4.4415 -2.7367 2.0868 34 1 3.6710 -0.5333 1.2623 35 1 2.3657 -1.3698 2.1381 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260514986.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:11 Heat of formation + Delta-G solvation = 1.356584 kcal Electronic energy + Delta-G solvation = -14199.832633 eV Core-core repulsion = 12004.315923 eV Total energy + Delta-G solvation = -2195.516710 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.71011 -35.37289 -33.10792 -30.77569 -30.14476 -28.24310 -25.02489 -23.79728 -22.41538 -21.09150 -19.06173 -18.89995 -15.97945 -15.22750 -14.82529 -14.76716 -14.08435 -13.54929 -13.19034 -13.08451 -12.79311 -12.26077 -11.81478 -11.59387 -11.48133 -11.16156 -11.01824 -10.84464 -10.66953 -10.48991 -10.34746 -10.03904 -9.67895 -9.14890 -8.96589 -8.72856 -7.94891 -7.12401 -6.36457 -3.95456 3.15887 3.26372 3.32059 4.18922 4.23533 4.27094 5.10385 5.31140 5.39006 5.42095 5.59046 5.69179 5.76493 5.84618 5.88301 5.98758 6.09770 6.14395 6.24194 6.28977 6.44048 6.57024 6.82792 6.84801 7.14369 7.19505 7.34110 7.48953 7.53713 7.53824 7.72760 8.33862 8.54520 9.11079 9.38656 9.57830 10.65439 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.042564 B = 0.008224 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.679423 B = 3403.793421 C = 3642.545528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.353 4.353 2 C 0.044 3.956 3 C -0.471 4.471 4 H 0.063 0.937 5 C 0.080 3.920 6 N -0.803 5.803 7 Si 0.887 3.113 8 H -0.274 1.274 9 H -0.282 1.282 10 H -0.265 1.265 11 C -0.046 4.046 12 C -0.096 4.096 13 C 0.057 3.943 14 N -0.536 5.536 15 C 0.050 3.950 16 C -0.148 4.148 17 C 0.055 3.945 18 C -0.101 4.101 19 H 0.081 0.919 20 H 0.037 0.963 21 H 0.269 0.731 22 H 0.043 0.957 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.023 0.977 27 H 0.025 0.975 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.023 0.977 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.123 -8.409 2.238 11.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.394 4.394 2 C 0.042 3.958 3 C -0.503 4.503 4 H 0.081 0.919 5 C -0.134 4.134 6 N -0.430 5.430 7 Si 0.713 3.287 8 H -0.200 1.200 9 H -0.207 1.207 10 H -0.190 1.190 11 C -0.065 4.065 12 C -0.134 4.134 13 C -0.070 4.070 14 N -0.261 5.261 15 C -0.078 4.078 16 C -0.206 4.206 17 C -0.072 4.072 18 C -0.139 4.139 19 H 0.100 0.900 20 H 0.056 0.944 21 H 0.080 0.920 22 H 0.061 0.939 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.271 -7.869 2.084 11.605 hybrid contribution -0.347 0.128 0.050 0.374 sum 7.923 -7.741 2.134 11.281 Atomic orbital electron populations 1.23196 0.94591 0.97054 1.24566 1.18299 0.92826 0.90681 0.93974 1.18989 1.01395 0.93132 1.36772 0.91884 1.25713 0.94399 1.00257 0.93077 1.69837 1.20937 1.30263 1.21955 0.86701 0.78941 0.82944 0.80159 1.19999 1.20744 1.18980 1.20231 0.95294 0.97569 0.93382 1.21499 0.97691 0.95955 0.98246 1.22177 0.94812 0.98352 0.91697 1.61959 1.21475 1.39951 1.02753 1.22040 0.94944 0.91431 0.99410 1.21800 0.98692 1.01680 0.98385 1.22202 0.94735 0.98106 0.92175 1.21545 0.97783 0.96276 0.98320 0.90048 0.94405 0.91996 0.93886 0.90549 0.92187 0.91680 0.95853 0.95632 0.91265 0.91858 0.92670 0.92842 0.95843 0.91381 0.90768 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.35 -9.96 12.92 29.59 0.38 -9.57 16 2 C 0.04 1.17 4.56 -105.07 -0.48 0.69 16 3 C -0.47 -12.99 8.01 -38.12 -0.31 -13.30 16 4 H 0.06 1.69 6.93 -52.49 -0.36 1.33 16 5 C 0.08 2.19 5.00 -17.26 -0.09 2.10 16 6 N -0.80 -22.76 11.31 55.57 0.63 -22.14 16 7 Si 0.89 20.32 29.61 -169.99 -5.03 15.29 16 8 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 11 C -0.05 -1.02 2.42 -91.65 -0.22 -1.24 16 12 C -0.10 -1.97 5.23 -26.65 -0.14 -2.11 16 13 C 0.06 0.96 5.46 -3.83 -0.02 0.94 16 14 N -0.54 -8.67 4.66 -234.67 -1.09 -9.76 16 15 C 0.05 0.65 5.68 -3.82 -0.02 0.63 16 16 C -0.15 -1.67 9.84 37.16 0.37 -1.31 16 17 C 0.06 0.91 5.29 -3.84 -0.02 0.89 16 18 C -0.10 -1.99 5.23 -26.66 -0.14 -2.13 16 19 H 0.08 2.45 6.47 -52.49 -0.34 2.11 16 20 H 0.04 1.01 7.91 -52.49 -0.42 0.59 16 21 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 22 H 0.04 0.95 7.85 -51.93 -0.41 0.54 16 23 H 0.08 1.70 7.67 -51.93 -0.40 1.30 16 24 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.06 0.99 8.02 -51.93 -0.42 0.58 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 28 H 0.07 0.84 7.99 -51.93 -0.41 0.42 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.63 6.43 -51.93 -0.33 0.29 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 1.00 6.21 -51.93 -0.32 0.68 16 34 H 0.07 1.56 7.01 -51.93 -0.36 1.19 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 274.28 15.07 4.13 4.13 Total: -1.00 -28.78 274.28 -7.92 -36.70 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.87 Total: 0.18 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -0.69 Total: -24.41 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: -0.46 Total: -31.89 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.78 -7.92 -36.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260514986.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.057 kcal (2) G-P(sol) polarization free energy of solvation -28.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds