Wall clock time and date at job start Mon Mar 30 2020 02:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35036 * 1 3 3 C 1.40070 * 119.99742 * 2 1 4 4 H 1.08002 * 119.99379 * 153.86704 * 3 2 1 5 5 C 1.40305 * 120.00378 * 333.87139 * 3 2 1 6 6 N 1.30688 * 119.99691 * 339.75571 * 5 3 2 7 7 Si 1.86799 * 120.00140 * 159.76376 * 5 3 2 8 8 H 1.48490 * 109.47437 * 84.97939 * 7 5 3 9 9 H 1.48499 * 109.47039 * 204.98469 * 7 5 3 10 10 H 1.48505 * 109.46956 * 324.97858 * 7 5 3 11 11 C 1.50704 * 119.99862 * 180.02562 * 2 1 3 12 12 C 1.53119 * 109.52073 * 120.00116 * 11 2 1 13 13 C 1.53041 * 109.27679 * 177.56076 * 12 11 2 14 14 N 1.46842 * 109.51868 * 300.81685 * 13 12 11 15 15 C 1.46910 * 110.99776 * 185.84019 * 14 13 12 16 16 C 1.52999 * 109.47132 * 170.00284 * 15 14 13 17 17 C 1.46849 * 111.19841 * 61.74670 * 14 13 12 18 18 C 1.53032 * 109.52082 * 298.25306 * 17 14 13 19 19 H 1.08002 * 120.00064 * 353.94156 * 1 2 3 20 20 H 1.07998 * 120.00160 * 173.93896 * 1 2 3 21 21 H 0.97007 * 120.00064 * 180.02562 * 6 5 3 22 22 H 1.09000 * 109.51935 * 359.87392 * 11 2 1 23 23 H 1.08997 * 109.50507 * 57.61401 * 12 11 2 24 24 H 1.09005 * 109.53391 * 297.51933 * 12 11 2 25 25 H 1.08997 * 109.45977 * 180.80261 * 13 12 11 26 26 H 1.08994 * 109.45314 * 60.83223 * 13 12 11 27 27 H 1.09002 * 109.47159 * 290.00128 * 15 14 13 28 28 H 1.08996 * 109.46693 * 49.99909 * 15 14 13 29 29 H 1.09002 * 109.46972 * 299.99959 * 16 15 14 30 30 H 1.09003 * 109.47427 * 59.99544 * 16 15 14 31 31 H 1.08997 * 109.47106 * 180.02562 * 16 15 14 32 32 H 1.08998 * 109.46176 * 58.27001 * 17 14 13 33 33 H 1.09007 * 109.46052 * 178.23922 * 17 14 13 34 34 H 1.08997 * 109.50737 * 299.23831 * 18 17 14 35 35 H 1.09001 * 109.50456 * 179.11988 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3504 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 3.0479 1.2608 0.4120 5 6 1.4567 2.3661 -0.5351 6 7 0.4568 2.2587 -1.3697 7 14 2.0952 4.0545 -0.0547 8 1 3.2440 4.4151 -0.9238 9 1 1.0139 5.0586 -0.2216 10 1 2.5353 4.0322 1.3635 11 6 2.1039 -1.3052 -0.0006 12 6 2.9846 -1.3869 -1.2504 13 6 3.7926 -2.6861 -1.2150 14 7 4.6247 -2.7136 -0.0054 15 6 5.5167 -3.8809 -0.0064 16 6 6.5331 -3.7471 1.1294 17 6 3.7984 -2.6838 1.2082 18 6 2.9906 -1.3846 1.2451 19 1 -0.5400 0.9301 0.0987 20 1 -0.5400 -0.9300 -0.0988 21 1 0.0463 3.0559 -1.7400 22 1 1.3962 -2.1342 0.0013 23 1 3.6650 -0.5356 -1.2725 24 1 2.3560 -1.3735 -2.1408 25 1 4.4314 -2.7406 -2.0965 26 1 3.1116 -3.5371 -1.2069 27 1 4.9289 -4.7875 0.1370 28 1 6.0422 -3.9356 -0.9598 29 1 7.1209 -2.8404 0.9859 30 1 6.0075 -3.6922 2.0827 31 1 7.1952 -4.6129 1.1283 32 1 3.1175 -3.5349 1.2050 33 1 4.4415 -2.7367 2.0868 34 1 3.6710 -0.5333 1.2623 35 1 2.3657 -1.3698 2.1381 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260514986.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:11 Heat of formation + Delta-G solvation = -15.780088 kcal Electronic energy + Delta-G solvation = -14200.575735 eV Core-core repulsion = 12004.315923 eV Total energy + Delta-G solvation = -2196.259812 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.15364 -37.12920 -34.88348 -32.35209 -31.65955 -29.76664 -27.18059 -25.22011 -23.89971 -22.31523 -20.98870 -20.58921 -17.67607 -17.11612 -16.51148 -16.03361 -15.32778 -15.22697 -14.92931 -14.54800 -14.20845 -13.92325 -13.36712 -13.21316 -12.83975 -12.66506 -12.63122 -12.32496 -12.25310 -12.03483 -11.92038 -11.85325 -11.24830 -11.11981 -10.80141 -10.78257 -9.26318 -9.17776 -8.47704 -6.16767 1.31655 1.39173 1.51309 2.10883 2.30236 3.02469 3.33466 4.03068 4.05784 4.10317 4.32191 4.38767 4.51164 4.59809 4.65251 4.68699 4.75380 4.81605 4.91000 5.00530 5.14423 5.20170 5.23160 5.29169 5.33236 5.43567 5.51327 5.54687 5.65476 6.13805 6.21999 6.30008 6.32331 6.94654 7.21879 7.45059 8.55876 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.042564 B = 0.008224 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.679423 B = 3403.793421 C = 3642.545528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.388 4.388 2 C 0.044 3.956 3 C -0.495 4.495 4 H 0.066 0.934 5 C 0.033 3.967 6 N -0.834 5.834 7 Si 0.963 3.037 8 H -0.262 1.262 9 H -0.275 1.275 10 H -0.260 1.260 11 C -0.047 4.047 12 C -0.089 4.089 13 C 0.067 3.933 14 N -0.550 5.550 15 C 0.049 3.951 16 C -0.144 4.144 17 C 0.064 3.936 18 C -0.095 4.095 19 H 0.053 0.947 20 H 0.041 0.959 21 H 0.277 0.723 22 H 0.040 0.960 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.085 0.915 26 H 0.031 0.969 27 H 0.034 0.966 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.030 0.970 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.172 -8.954 2.692 13.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.429 4.429 2 C 0.042 3.958 3 C -0.526 4.526 4 H 0.084 0.916 5 C -0.180 4.180 6 N -0.461 5.461 7 Si 0.785 3.215 8 H -0.187 1.187 9 H -0.199 1.199 10 H -0.185 1.185 11 C -0.066 4.066 12 C -0.127 4.127 13 C -0.061 4.061 14 N -0.276 5.276 15 C -0.079 4.079 16 C -0.202 4.202 17 C -0.064 4.064 18 C -0.133 4.133 19 H 0.072 0.928 20 H 0.060 0.940 21 H 0.087 0.913 22 H 0.059 0.941 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.326 -8.434 2.537 13.572 hybrid contribution -0.986 0.312 -0.132 1.042 sum 9.340 -8.122 2.405 12.609 Atomic orbital electron populations 1.23007 0.95334 0.95925 1.28656 1.18775 0.92769 0.92896 0.91347 1.19289 1.01748 0.94178 1.37409 0.91600 1.26664 0.94435 1.04475 0.92397 1.69928 1.21928 1.31902 1.22362 0.85527 0.78673 0.77363 0.79953 1.18712 1.19943 1.18451 1.20216 0.95646 0.94929 0.95767 1.21360 0.97160 0.97615 0.96603 1.22024 0.94970 0.95952 0.93134 1.61936 1.21416 1.42177 1.02045 1.22152 0.94670 0.90256 1.00786 1.21779 0.98460 1.02391 0.97532 1.22094 0.94899 0.95992 0.93395 1.21433 0.97309 0.97820 0.96707 0.92803 0.94032 0.91330 0.94118 0.92676 0.93791 0.89714 0.95121 0.94769 0.90173 0.92653 0.92776 0.90529 0.95204 0.89161 0.92443 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.39 -22.84 12.92 67.08 0.87 -21.98 16 2 C 0.04 2.41 4.56 -20.16 -0.09 2.32 16 3 C -0.50 -27.79 8.01 23.22 0.19 -27.60 16 4 H 0.07 3.58 6.93 -2.91 -0.02 3.56 16 5 C 0.03 1.82 5.00 85.37 0.43 2.25 16 6 N -0.83 -48.25 11.31 21.89 0.25 -48.00 16 7 Si 0.96 41.70 29.61 68.60 2.03 43.73 16 8 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 9 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 10 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 11 C -0.05 -2.10 2.42 -11.46 -0.03 -2.13 16 12 C -0.09 -3.68 5.23 30.65 0.16 -3.52 16 13 C 0.07 2.13 5.46 86.33 0.47 2.60 16 14 N -0.55 -16.41 4.66 -896.36 -4.17 -20.59 16 15 C 0.05 1.09 5.68 86.30 0.49 1.58 16 16 C -0.14 -2.76 9.84 71.98 0.71 -2.05 16 17 C 0.06 1.95 5.29 86.32 0.46 2.40 16 18 C -0.09 -3.67 5.23 30.64 0.16 -3.51 16 19 H 0.05 3.40 6.47 -2.91 -0.02 3.38 16 20 H 0.04 2.32 7.91 -2.91 -0.02 2.30 16 21 H 0.28 14.69 8.29 -92.70 -0.77 13.92 16 22 H 0.04 1.82 7.85 -2.39 -0.02 1.80 16 23 H 0.05 2.48 7.67 -2.39 -0.02 2.46 16 24 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 25 H 0.08 2.37 8.02 -2.39 -0.02 2.35 16 26 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.03 0.73 8.12 -2.39 -0.02 0.71 16 28 H 0.08 1.64 7.99 -2.39 -0.02 1.62 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.04 6.43 -2.39 -0.02 1.03 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.03 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.09 2.38 6.21 -2.38 -0.01 2.36 16 34 H 0.06 2.40 7.01 -2.39 -0.02 2.38 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -62.71 274.28 2.94 -59.77 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 1.03 Total: 14.73 kcal Atomic # 6 Polarization: -53.44 SS G_CDS: 3.81 Total: -49.64 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -3.93 Total: -68.59 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -62.71 2.94 -59.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260514986.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.986 kcal (2) G-P(sol) polarization free energy of solvation -62.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds