Wall clock time and date at job start Mon Mar 30 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30512 * 1 3 3 Si 1.86804 * 119.99827 * 2 1 4 4 H 1.48502 * 109.47137 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.46940 * 120.00413 * 3 2 1 6 6 H 1.48501 * 109.47188 * 240.00495 * 3 2 1 7 7 C 1.40550 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00463 * 355.51438 * 7 2 1 9 9 C 1.39579 * 119.99934 * 175.52430 * 7 2 1 10 10 C 1.38000 * 125.08956 * 189.96034 * 9 7 2 11 11 C 1.37968 * 115.16026 * 179.97438 * 10 9 7 12 12 C 1.38627 * 113.37530 * 359.97438 * 11 10 9 13 13 S 1.75547 * 125.09273 * 9.65133 * 9 7 2 14 14 C 1.41997 * 109.37838 * 179.97438 * 12 11 10 15 15 O 1.21517 * 127.35804 * 179.97438 * 14 12 11 16 16 C 1.51049 * 105.29282 * 0.02562 * 14 12 11 17 17 O 1.37198 * 136.12818 * 179.97438 * 11 10 9 18 18 H 0.97002 * 120.00369 * 178.54589 * 1 2 3 19 19 H 1.08001 * 122.41824 * 359.94314 * 10 9 7 20 20 H 1.09005 * 110.23682 * 240.98905 * 16 14 12 21 21 H 1.08992 * 110.24302 * 119.00510 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 1.2741 2.7465 0.0006 5 1 3.0929 1.6964 1.2124 6 1 3.0928 1.6966 -1.2126 7 6 2.0079 -1.2172 -0.0005 8 1 1.4704 -2.1512 0.0722 9 6 3.4005 -1.2190 -0.0949 10 6 4.1803 -2.3388 -0.3003 11 6 5.5386 -2.1047 -0.3607 12 6 5.8741 -0.7691 -0.2023 13 16 4.4218 0.2040 0.0224 14 6 7.2848 -0.6254 -0.2779 15 8 7.9276 0.4014 -0.1824 16 6 7.8158 -2.0214 -0.5036 17 8 6.6663 -2.8653 -0.5404 18 1 -0.4851 -0.8398 -0.0213 19 1 3.7578 -3.3272 -0.4057 20 1 8.4712 -2.3128 0.3172 21 1 8.3518 -2.0723 -1.4513 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260529787.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:27 Heat of formation + Delta-G solvation = -59.698418 kcal Electronic energy + Delta-G solvation = -11290.057088 eV Core-core repulsion = 9029.427760 eV Total energy + Delta-G solvation = -2260.629328 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 210.014 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.22562 -36.94898 -35.56301 -33.76345 -29.87180 -28.57674 -25.30056 -21.81482 -20.38469 -19.03339 -18.81615 -16.63965 -15.83032 -15.29548 -14.87301 -14.08072 -13.84927 -13.20797 -12.78322 -12.76614 -12.64841 -12.44394 -11.47217 -11.36629 -10.75813 -10.38730 -10.06402 -9.92548 -8.99611 -8.76401 -8.14436 -7.88247 -7.03579 -5.17321 1.58659 2.35502 2.82128 2.90492 3.02779 3.19922 3.46912 3.61765 3.92679 4.05875 4.48935 5.09103 5.51898 5.61174 6.14789 6.38977 6.59909 6.67294 6.84422 7.14874 7.30553 7.43844 7.84122 7.91915 8.53032 9.21962 Molecular weight = 210.01amu Principal moments of inertia in cm(-1) A = 0.053537 B = 0.012557 C = 0.010247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.875210 B = 2229.211770 C = 2731.955934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.049 3.951 3 Si 0.913 3.087 4 H -0.220 1.220 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.382 4.382 8 H 0.106 0.894 9 C 0.063 3.937 10 C -0.335 4.335 11 C 0.208 3.792 12 C -0.532 4.532 13 S 0.039 5.961 14 C 0.398 3.602 15 O -0.513 6.513 16 C 0.008 3.992 17 O -0.292 6.292 18 H 0.299 0.701 19 H 0.121 0.879 20 H 0.106 0.894 21 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.081 -0.812 -0.305 2.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.181 4.181 3 Si 0.734 3.266 4 H -0.143 1.143 5 H -0.121 1.121 6 H -0.119 1.119 7 C -0.418 4.418 8 H 0.124 0.876 9 C -0.057 4.057 10 C -0.358 4.358 11 C 0.154 3.846 12 C -0.645 4.645 13 S 0.293 5.707 14 C 0.288 3.712 15 O -0.400 6.400 16 C -0.071 4.071 17 O -0.205 6.205 18 H 0.112 0.888 19 H 0.139 0.861 20 H 0.124 0.876 21 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.953 2.440 -0.086 3.126 hybrid contribution 0.387 -3.408 -0.222 3.437 sum 2.340 -0.969 -0.308 2.551 Atomic orbital electron populations 1.70450 1.07873 1.34050 1.24932 1.27655 0.95750 1.04308 0.90341 0.84633 0.79900 0.76042 0.86017 1.14294 1.12147 1.11852 1.20759 0.90424 0.97403 1.33221 0.87616 1.21533 0.96228 0.93753 0.94171 1.18625 0.87575 0.99127 1.30453 1.19525 0.87956 0.87774 0.89349 1.24105 0.99531 0.98096 1.42799 1.84185 0.96407 1.09710 1.80441 1.20125 0.87560 0.89119 0.74388 1.90504 1.68004 1.33752 1.47783 1.23416 0.88249 0.91640 1.03792 1.86741 1.13274 1.32891 1.87637 0.88816 0.86087 0.87606 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -16.70 13.64 55.58 0.76 -15.95 14 2 C 0.05 1.08 5.53 -17.24 -0.10 0.98 14 3 Si 0.91 17.91 24.50 -169.99 -4.17 13.75 14 4 H -0.22 -4.01 7.11 56.52 0.40 -3.61 14 5 H -0.20 -3.77 6.29 60.43 0.38 -3.39 14 6 H -0.19 -3.80 6.37 58.50 0.37 -3.42 14 7 C -0.38 -8.80 9.72 -38.21 -0.37 -9.17 14 8 H 0.11 2.38 8.06 -52.48 -0.42 1.96 14 9 C 0.06 1.51 5.98 -39.17 -0.23 1.28 14 10 C -0.34 -7.94 10.16 -39.77 -0.40 -8.35 14 11 C 0.21 4.95 7.55 -39.54 -0.30 4.65 14 12 C -0.53 -13.12 7.19 -38.00 -0.27 -13.39 14 13 S 0.04 0.94 15.38 -107.50 -1.65 -0.72 14 14 C 0.40 9.21 7.77 -32.70 -0.25 8.96 14 15 O -0.51 -12.90 18.04 5.35 0.10 -12.80 14 16 C 0.01 0.14 7.93 36.18 0.29 0.43 14 17 O -0.29 -6.19 11.12 -23.70 -0.26 -6.46 14 18 H 0.30 6.26 8.72 -40.82 -0.36 5.90 14 19 H 0.12 2.68 8.06 -52.49 -0.42 2.25 14 20 H 0.11 1.64 8.14 -51.93 -0.42 1.22 14 21 H 0.11 1.64 8.14 -51.93 -0.42 1.22 14 LS Contribution 205.40 15.07 3.10 3.10 Total: -1.00 -26.90 205.40 -4.67 -31.57 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -0.89 Total: 2.13 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -1.64 Total: -14.62 kcal Atomic # 7 Polarization: -16.70 SS G_CDS: 0.76 Total: -15.95 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.17 Total: -19.26 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -4.17 Total: 13.75 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -1.65 Total: -0.72 kcal Total LS contribution 3.10 Total: 3.10 kcal Total: -26.90 -4.67 -31.57 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260529787.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.129 kcal (2) G-P(sol) polarization free energy of solvation -26.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds