Wall clock time and date at job start Mon Mar 30 2020 02:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47485 * 110.99820 * 2 1 4 4 C 1.53514 * 87.93419 * 138.70157 * 3 2 1 5 5 C 1.52990 * 114.17020 * 220.32822 * 4 3 2 6 6 H 1.09001 * 109.47357 * 33.84263 * 5 4 3 7 7 C 1.53006 * 109.47248 * 153.83783 * 5 4 3 8 8 C 1.50703 * 109.47103 * 184.99972 * 7 5 4 9 9 H 1.08001 * 120.00206 * 0.02562 * 8 7 5 10 10 C 1.37878 * 119.99740 * 179.97438 * 8 7 5 11 11 N 1.31513 * 119.99965 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99890 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47404 * 90.00167 * 12 10 8 14 14 H 1.48500 * 109.47150 * 210.00467 * 12 10 8 15 15 H 1.48500 * 109.47249 * 330.00239 * 12 10 8 16 16 C 1.52998 * 109.47181 * 273.83928 * 5 4 3 17 17 C 1.53005 * 117.50018 * 128.74663 * 16 5 4 18 18 C 1.52995 * 117.50077 * 60.08835 * 16 5 4 19 19 C 1.47485 * 110.99912 * 95.96839 * 2 1 3 20 20 H 1.09002 * 109.47401 * 324.03138 * 1 2 3 21 21 H 1.09001 * 109.46874 * 204.03151 * 1 2 3 22 22 H 1.09004 * 109.46970 * 84.03284 * 1 2 3 23 23 H 1.08998 * 113.47094 * 253.46841 * 3 2 1 24 24 H 1.08992 * 113.47615 * 23.93317 * 3 2 1 25 25 H 1.09001 * 114.34291 * 87.62960 * 4 3 2 26 26 H 1.08997 * 109.47138 * 305.00245 * 7 5 4 27 27 H 1.09002 * 109.46819 * 65.00186 * 7 5 4 28 28 H 0.96999 * 119.99763 * 179.97438 * 11 10 8 29 29 H 1.08999 * 115.54996 * 274.41833 * 16 5 4 30 30 H 1.09002 * 117.49470 * 0.02562 * 17 16 5 31 31 H 1.09001 * 117.49602 * 145.01604 * 17 16 5 32 32 H 1.08999 * 117.50116 * 214.98500 * 18 16 5 33 33 H 1.09001 * 117.49664 * 359.97438 * 18 16 5 34 34 H 1.09003 * 113.47466 * 336.06154 * 19 2 1 35 35 H 1.09001 * 113.47832 * 106.46983 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3769 0.0000 4 6 3.0537 0.9122 1.0125 5 6 3.3361 1.9187 2.1296 6 1 2.4193 2.4541 2.3766 7 6 3.8428 1.1770 3.3683 8 6 4.0041 2.1516 4.5064 9 1 3.7683 3.1955 4.3609 10 6 4.4516 1.7104 5.7336 11 7 4.7382 0.4391 5.9108 12 14 4.6522 2.9185 7.1441 13 1 3.3842 2.9969 7.9129 14 1 5.7454 2.4588 8.0379 15 1 4.9867 4.2603 6.6028 16 6 4.3985 2.9152 1.6617 17 6 4.0870 4.4051 1.8174 18 6 4.0784 3.7621 0.4284 19 6 1.9975 -0.1432 1.3694 20 1 -0.3634 0.8317 0.6036 21 1 -0.3633 -0.9386 0.4185 22 1 -0.3633 0.1068 -1.0221 23 1 2.4187 1.6803 -0.9585 24 1 1.3000 2.1097 0.4056 25 1 3.9585 0.5036 0.5624 26 1 3.1253 0.4061 3.6490 27 1 4.8048 0.7148 3.1467 28 1 5.0534 0.1288 6.7740 29 1 5.4326 2.6000 1.8011 30 1 3.1253 4.6753 2.2536 31 1 4.9162 5.0701 2.0590 32 1 4.9018 4.0043 -0.2435 33 1 3.1109 3.6090 -0.0499 34 1 1.3000 0.1841 2.1405 35 1 2.4178 -1.1283 1.5719 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260529900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:34 Heat of formation + Delta-G solvation = 44.625897 kcal Electronic energy + Delta-G solvation = -14152.130365 eV Core-core repulsion = 11958.489953 eV Total energy + Delta-G solvation = -2193.640412 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.98006 -36.87680 -33.26286 -31.55647 -29.10260 -25.78021 -25.47570 -22.89076 -21.70103 -21.61791 -19.39551 -18.98904 -16.30084 -15.58455 -15.01563 -14.73244 -14.39976 -14.13942 -13.85472 -12.74375 -12.33163 -12.31251 -11.78680 -11.56870 -11.35455 -11.05713 -10.93350 -10.74451 -10.58055 -10.51330 -10.13168 -9.91496 -9.66472 -9.38351 -8.95270 -8.89384 -8.49209 -8.30487 -5.95276 -3.95825 3.33321 3.40154 3.43358 4.32827 4.49380 4.54112 4.91397 5.12734 5.29867 5.39603 5.42826 5.55665 5.62363 5.67167 5.73178 5.84726 5.92477 5.97461 6.09719 6.17218 6.21604 6.34419 6.47047 6.50269 6.56239 6.65370 6.79650 7.08043 7.15421 7.34428 7.72805 7.85690 8.04944 8.49024 9.11116 9.67491 11.16065 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.031147 B = 0.009264 C = 0.007714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.757012 B = 3021.839145 C = 3628.977512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.485 5.485 3 C 0.000 4.000 4 C -0.098 4.098 5 C -0.042 4.042 6 H 0.055 0.945 7 C 0.032 3.968 8 C -0.510 4.510 9 H 0.057 0.943 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.886 3.114 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.274 1.274 16 C -0.107 4.107 17 C -0.176 4.176 18 C -0.201 4.201 19 C 0.005 3.995 20 H 0.034 0.966 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.095 0.905 26 H 0.018 0.982 27 H 0.017 0.983 28 H 0.259 0.741 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.790 2.717 -9.903 11.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.207 5.207 3 C -0.128 4.128 4 C -0.116 4.116 5 C -0.061 4.061 6 H 0.074 0.926 7 C -0.005 4.005 8 C -0.548 4.548 9 H 0.075 0.925 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.715 3.285 13 H -0.209 1.209 14 H -0.214 1.214 15 H -0.199 1.199 16 C -0.125 4.125 17 C -0.213 4.213 18 C -0.238 4.238 19 C -0.124 4.124 20 H 0.052 0.948 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.113 0.887 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.591 2.100 -10.316 11.485 hybrid contribution -0.270 1.205 1.539 1.973 sum -4.860 3.305 -8.777 10.563 Atomic orbital electron populations 1.22856 0.90527 1.01173 1.01491 1.68860 1.08455 1.19581 1.23816 1.24011 0.97615 0.90937 1.00266 1.22730 0.96612 0.96281 0.96016 1.20872 0.96352 0.93895 0.95003 0.92614 1.19099 0.96317 0.95091 0.90024 1.21261 1.43337 0.94892 0.95326 0.92488 1.25002 0.95856 0.94963 0.98691 1.69962 1.45946 1.13922 1.23854 0.86681 0.77646 0.81627 0.82570 1.20880 1.21365 1.19928 1.22154 1.00362 0.91626 0.98331 1.22835 1.02404 0.97048 0.98997 1.23012 1.02172 1.07323 0.91306 1.23843 0.97365 1.00921 0.90222 0.94783 0.91665 0.91712 0.90472 0.91797 0.88699 0.96380 0.96480 0.93171 0.88285 0.89491 0.89800 0.89998 0.89486 0.91173 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.14 9.69 60.07 0.58 0.44 16 2 N -0.49 -7.46 6.73 -252.94 -1.70 -9.16 16 3 C 0.00 0.01 5.55 -7.54 -0.04 -0.04 16 4 C -0.10 -1.66 3.27 -90.09 -0.29 -1.96 16 5 C -0.04 -0.83 1.79 -90.62 -0.16 -0.99 16 6 H 0.06 1.12 7.65 -51.93 -0.40 0.73 16 7 C 0.03 0.78 4.32 -27.88 -0.12 0.66 16 8 C -0.51 -13.94 8.61 -34.44 -0.30 -14.24 16 9 H 0.06 1.53 7.33 -52.49 -0.38 1.14 16 10 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 12 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 C -0.11 -1.95 4.51 -90.62 -0.41 -2.36 16 17 C -0.18 -2.97 9.90 -26.69 -0.26 -3.24 16 18 C -0.20 -3.03 9.75 -26.70 -0.26 -3.29 16 19 C 0.00 0.08 6.28 -7.53 -0.05 0.04 16 20 H 0.03 0.43 7.52 -51.93 -0.39 0.04 16 21 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.08 1.07 7.94 -51.93 -0.41 0.66 16 24 H 0.06 0.93 7.33 -51.93 -0.38 0.55 16 25 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 26 H 0.02 0.47 7.31 -51.93 -0.38 0.09 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.10 1.94 8.11 -51.93 -0.42 1.52 16 30 H 0.09 1.48 8.05 -51.93 -0.42 1.06 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.23 6.39 -51.93 -0.33 0.90 16 34 H 0.07 1.22 7.87 -51.93 -0.41 0.81 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 280.81 15.07 4.23 4.23 Total: -1.00 -28.74 280.81 -9.19 -37.93 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.02 Total: -0.14 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -1.41 Total: -23.51 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: -0.97 Total: -35.10 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.74 -9.19 -37.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260529900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.552 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds