Wall clock time and date at job start Mon Mar 30 2020 02:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47485 * 110.99820 * 2 1 4 4 C 1.53514 * 87.93419 * 138.70157 * 3 2 1 5 5 C 1.52990 * 114.17020 * 220.32822 * 4 3 2 6 6 H 1.09001 * 109.47357 * 33.84263 * 5 4 3 7 7 C 1.53006 * 109.47248 * 153.83783 * 5 4 3 8 8 C 1.50703 * 109.47103 * 184.99972 * 7 5 4 9 9 H 1.08001 * 120.00206 * 0.02562 * 8 7 5 10 10 C 1.37878 * 119.99740 * 179.97438 * 8 7 5 11 11 N 1.31513 * 119.99965 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99890 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47404 * 90.00167 * 12 10 8 14 14 H 1.48500 * 109.47150 * 210.00467 * 12 10 8 15 15 H 1.48500 * 109.47249 * 330.00239 * 12 10 8 16 16 C 1.52998 * 109.47181 * 273.83928 * 5 4 3 17 17 C 1.53005 * 117.50018 * 128.74663 * 16 5 4 18 18 C 1.52995 * 117.50077 * 60.08835 * 16 5 4 19 19 C 1.47485 * 110.99912 * 95.96839 * 2 1 3 20 20 H 1.09002 * 109.47401 * 324.03138 * 1 2 3 21 21 H 1.09001 * 109.46874 * 204.03151 * 1 2 3 22 22 H 1.09004 * 109.46970 * 84.03284 * 1 2 3 23 23 H 1.08998 * 113.47094 * 253.46841 * 3 2 1 24 24 H 1.08992 * 113.47615 * 23.93317 * 3 2 1 25 25 H 1.09001 * 114.34291 * 87.62960 * 4 3 2 26 26 H 1.08997 * 109.47138 * 305.00245 * 7 5 4 27 27 H 1.09002 * 109.46819 * 65.00186 * 7 5 4 28 28 H 0.96999 * 119.99763 * 179.97438 * 11 10 8 29 29 H 1.08999 * 115.54996 * 274.41833 * 16 5 4 30 30 H 1.09002 * 117.49470 * 0.02562 * 17 16 5 31 31 H 1.09001 * 117.49602 * 145.01604 * 17 16 5 32 32 H 1.08999 * 117.50116 * 214.98500 * 18 16 5 33 33 H 1.09001 * 117.49664 * 359.97438 * 18 16 5 34 34 H 1.09003 * 113.47466 * 336.06154 * 19 2 1 35 35 H 1.09001 * 113.47832 * 106.46983 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3769 0.0000 4 6 3.0537 0.9122 1.0125 5 6 3.3361 1.9187 2.1296 6 1 2.4193 2.4541 2.3766 7 6 3.8428 1.1770 3.3683 8 6 4.0041 2.1516 4.5064 9 1 3.7683 3.1955 4.3609 10 6 4.4516 1.7104 5.7336 11 7 4.7382 0.4391 5.9108 12 14 4.6522 2.9185 7.1441 13 1 3.3842 2.9969 7.9129 14 1 5.7454 2.4588 8.0379 15 1 4.9867 4.2603 6.6028 16 6 4.3985 2.9152 1.6617 17 6 4.0870 4.4051 1.8174 18 6 4.0784 3.7621 0.4284 19 6 1.9975 -0.1432 1.3694 20 1 -0.3634 0.8317 0.6036 21 1 -0.3633 -0.9386 0.4185 22 1 -0.3633 0.1068 -1.0221 23 1 2.4187 1.6803 -0.9585 24 1 1.3000 2.1097 0.4056 25 1 3.9585 0.5036 0.5624 26 1 3.1253 0.4061 3.6490 27 1 4.8048 0.7148 3.1467 28 1 5.0534 0.1288 6.7740 29 1 5.4326 2.6000 1.8011 30 1 3.1253 4.6753 2.2536 31 1 4.9162 5.0701 2.0590 32 1 4.9018 4.0043 -0.2435 33 1 3.1109 3.6090 -0.0499 34 1 1.3000 0.1841 2.1405 35 1 2.4178 -1.1283 1.5719 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260529900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:34 Heat of formation + Delta-G solvation = 26.452301 kcal Electronic energy + Delta-G solvation = -14152.918431 eV Core-core repulsion = 11958.489953 eV Total energy + Delta-G solvation = -2194.428478 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.29424 -38.26673 -35.22845 -33.20796 -30.63300 -27.45453 -26.86604 -24.36049 -23.36317 -22.95235 -20.76505 -20.46386 -18.38870 -16.86055 -16.66897 -16.29405 -15.71714 -15.64764 -15.18725 -14.31475 -13.94853 -13.58384 -13.48190 -13.35952 -12.82166 -12.73554 -12.35471 -12.33556 -12.12590 -12.00051 -11.82698 -11.38249 -11.26987 -11.09421 -10.59676 -10.47946 -10.42324 -9.79469 -8.12994 -6.20497 1.40108 1.40730 1.51462 2.43970 3.05804 3.20778 3.25415 3.59498 3.78705 4.11604 4.16232 4.27178 4.33630 4.42802 4.50744 4.60335 4.67562 4.78241 4.82419 4.90198 4.94450 4.96801 5.01907 5.14896 5.30595 5.34795 5.37077 5.42014 5.51296 5.65368 5.85763 5.94071 6.14336 6.35995 6.96203 7.47100 8.98727 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.031147 B = 0.009264 C = 0.007714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.757012 B = 3021.839145 C = 3628.977512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.490 5.490 3 C 0.015 3.985 4 C -0.101 4.101 5 C -0.027 4.027 6 H 0.051 0.949 7 C 0.039 3.961 8 C -0.519 4.519 9 H 0.061 0.939 10 C -0.002 4.002 11 N -0.936 5.936 12 Si 0.954 3.046 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.264 1.264 16 C -0.137 4.137 17 C -0.182 4.182 18 C -0.163 4.163 19 C 0.002 3.998 20 H 0.037 0.963 21 H 0.068 0.932 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.072 0.928 25 H 0.090 0.910 26 H -0.007 1.007 27 H -0.014 1.014 28 H 0.259 0.741 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.576 4.397 -11.169 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 N -0.212 5.212 3 C -0.114 4.114 4 C -0.120 4.120 5 C -0.046 4.046 6 H 0.070 0.930 7 C 0.002 3.998 8 C -0.557 4.557 9 H 0.079 0.921 10 C -0.199 4.199 11 N -0.577 5.577 12 Si 0.779 3.221 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.188 1.188 16 C -0.155 4.155 17 C -0.219 4.219 18 C -0.200 4.200 19 C -0.126 4.126 20 H 0.055 0.945 21 H 0.087 0.913 22 H 0.103 0.897 23 H 0.114 0.886 24 H 0.090 0.910 25 H 0.108 0.892 26 H 0.011 0.989 27 H 0.005 0.995 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.387 3.792 -11.597 13.337 hybrid contribution -0.028 0.639 1.920 2.023 sum -5.415 4.432 -9.677 11.942 Atomic orbital electron populations 1.22931 0.88791 1.01608 1.02876 1.68841 1.10271 1.19982 1.22091 1.23936 0.96408 0.90855 1.00167 1.22652 0.97139 0.96012 0.96150 1.20583 0.96196 0.94212 0.93595 0.93036 1.18954 0.94188 0.94496 0.92189 1.21655 1.42509 0.95438 0.96127 0.92051 1.25882 0.95747 0.96669 1.01618 1.70101 1.47153 1.15907 1.24544 0.85616 0.77705 0.79584 0.79182 1.20141 1.21204 1.18806 1.21987 0.98803 0.92321 1.02383 1.22915 1.02515 0.95712 1.00801 1.23070 1.03550 1.03159 0.90228 1.23774 0.97422 1.00259 0.91193 0.94451 0.91288 0.89735 0.88558 0.91029 0.89173 0.98892 0.99533 0.93177 0.90324 0.89671 0.89239 0.87927 0.87868 0.92099 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.31 9.69 127.69 1.24 0.93 16 2 N -0.49 -14.18 6.73 -954.16 -6.42 -20.60 16 3 C 0.01 0.40 5.55 83.58 0.46 0.86 16 4 C -0.10 -3.39 3.27 -10.45 -0.03 -3.42 16 5 C -0.03 -1.06 1.79 -10.80 -0.02 -1.08 16 6 H 0.05 2.06 7.65 -2.39 -0.02 2.04 16 7 C 0.04 2.00 4.32 29.85 0.13 2.13 16 8 C -0.52 -28.91 8.61 25.60 0.22 -28.69 16 9 H 0.06 3.29 7.33 -2.91 -0.02 3.27 16 10 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 11 N -0.94 -57.20 13.29 21.45 0.28 -56.91 16 12 Si 0.95 44.59 29.54 68.60 2.03 46.62 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 14 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 15 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 16 C -0.14 -4.92 4.51 -10.79 -0.05 -4.97 16 17 C -0.18 -5.82 9.90 30.62 0.30 -5.52 16 18 C -0.16 -4.41 9.75 30.62 0.30 -4.11 16 19 C 0.00 0.08 6.28 83.58 0.52 0.61 16 20 H 0.04 0.86 7.52 -2.39 -0.02 0.84 16 21 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 23 H 0.10 2.29 7.94 -2.39 -0.02 2.27 16 24 H 0.07 1.86 7.33 -2.39 -0.02 1.84 16 25 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 26 H -0.01 -0.40 7.31 -2.39 -0.02 -0.42 16 27 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 28 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.08 3.13 8.11 -2.39 -0.02 3.11 16 30 H 0.08 2.74 8.05 -2.39 -0.02 2.72 16 31 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.10 2.48 6.39 -2.39 -0.02 2.47 16 34 H 0.06 2.15 7.87 -2.39 -0.02 2.13 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -62.12 280.81 0.46 -61.66 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.03 Total: 12.17 kcal Atomic # 6 Polarization: -46.48 SS G_CDS: 3.54 Total: -42.94 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: -6.14 Total: -77.52 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -62.12 0.46 -61.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260529900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.117 kcal (2) G-P(sol) polarization free energy of solvation -62.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds