Wall clock time and date at job start Mon Mar 30 2020 02:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47254 * 2 1 4 4 C 1.47248 * 110.99640 * 66.04649 * 3 2 1 5 5 C 1.53085 * 108.47051 * 54.58629 * 4 3 2 6 6 C 1.50300 * 109.72187 * 48.96198 * 5 4 3 7 7 C 1.29825 * 122.89117 * 343.47605 * 6 5 4 8 8 C 1.50700 * 118.35843 * 180.41766 * 7 6 5 9 9 C 1.53001 * 109.47293 * 95.00429 * 8 7 6 10 10 C 1.50700 * 109.47293 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00092 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99798 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00209 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99856 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47216 * 59.99959 * 14 12 10 16 16 H 1.48502 * 109.47148 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47029 * 299.99625 * 14 12 10 18 18 C 1.46838 * 111.00030 * 188.97376 * 3 2 1 19 19 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47153 * 300.00004 * 1 2 3 21 21 H 1.08998 * 109.47533 * 59.99633 * 1 2 3 22 22 H 1.09002 * 109.47153 * 239.99996 * 2 1 3 23 23 H 1.09001 * 109.46832 * 120.00187 * 2 1 3 24 24 H 1.09004 * 109.63088 * 174.27561 * 4 3 2 25 25 H 1.08998 * 109.63526 * 294.88649 * 4 3 2 26 26 H 1.09001 * 109.42895 * 169.03976 * 5 4 3 27 27 H 1.09001 * 109.42861 * 288.93165 * 5 4 3 28 28 H 1.07994 * 118.55628 * 163.50265 * 6 5 4 29 29 H 1.09008 * 109.47448 * 215.00286 * 8 7 6 30 30 H 1.09001 * 109.47154 * 335.00330 * 8 7 6 31 31 H 1.09008 * 109.46757 * 300.00280 * 9 8 7 32 32 H 1.09001 * 109.47101 * 59.99869 * 9 8 7 33 33 H 0.96995 * 119.99836 * 180.02562 * 13 12 10 34 34 H 1.09007 * 109.33456 * 47.78833 * 18 3 2 35 35 H 1.09006 * 109.33817 * 167.29403 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6693 2.0684 1.2563 5 6 2.1963 1.2333 2.4261 6 6 3.6335 0.8677 2.1814 7 6 4.1932 0.9516 1.0130 8 6 5.6395 0.5492 0.8816 9 6 5.7238 -0.9087 0.4250 10 6 7.1702 -1.3109 0.2930 11 1 7.9512 -0.5982 0.5132 12 6 7.4963 -2.5891 -0.1078 13 7 6.5453 -3.4572 -0.3755 14 14 9.2891 -3.0879 -0.2707 15 1 9.9653 -2.9404 1.0431 16 1 9.3709 -4.5029 -0.7140 17 1 9.9562 -2.2170 -1.2715 18 6 3.4717 1.4297 -0.2138 19 1 -0.3635 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.1285 3.0569 1.2758 25 1 0.5861 2.1629 1.3322 26 1 2.1209 1.8112 3.3472 27 1 1.6023 0.3240 2.5190 28 1 4.2265 0.5194 3.0140 29 1 6.1294 1.1888 0.1473 30 1 6.1358 0.6571 1.8461 31 1 5.2339 -1.5483 1.1593 32 1 5.2276 -1.0166 -0.5395 33 1 6.7748 -4.3566 -0.6571 34 1 3.7321 0.7905 -1.0575 35 1 3.7728 2.4540 -0.4338 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260549925.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:13 Heat of formation + Delta-G solvation = -1.319534 kcal Electronic energy + Delta-G solvation = -13999.213304 eV Core-core repulsion = 11803.580549 eV Total energy + Delta-G solvation = -2195.632755 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.50454 -34.80566 -32.86764 -31.52833 -30.32536 -28.71902 -25.07855 -24.29116 -23.11387 -21.20301 -20.03154 -17.31554 -16.37053 -15.66905 -15.26209 -14.53333 -14.38806 -13.92400 -13.33094 -13.05052 -12.53062 -12.24694 -12.15824 -11.86897 -11.65396 -11.41807 -11.06245 -10.94294 -10.91154 -10.79743 -10.66227 -10.25450 -9.80581 -9.61026 -9.10536 -8.34955 -8.13213 -8.00265 -5.99681 -4.02636 2.72783 3.33170 3.37441 3.40081 4.20073 4.46055 5.07252 5.20817 5.24005 5.35690 5.40564 5.46005 5.54923 5.68527 5.75982 5.84449 5.98424 6.03608 6.05270 6.13420 6.23071 6.32867 6.41466 6.47528 6.69994 6.92736 7.15071 7.25421 7.29632 7.52746 7.67663 7.85026 8.00352 8.41984 9.04176 9.61348 11.11305 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047873 B = 0.006973 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.735266 B = 4014.675524 C = 4286.587631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.040 3.960 3 N -0.529 5.529 4 C 0.050 3.950 5 C -0.120 4.120 6 C -0.187 4.187 7 C -0.128 4.128 8 C -0.082 4.082 9 C 0.033 3.967 10 C -0.523 4.523 11 H 0.054 0.946 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.086 3.914 19 H 0.056 0.944 20 H 0.051 0.949 21 H 0.058 0.942 22 H 0.074 0.926 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.014 0.986 32 H 0.015 0.985 33 H 0.261 0.739 34 H 0.088 0.912 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.030 8.723 2.544 13.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 N -0.251 5.251 4 C -0.078 4.078 5 C -0.158 4.158 6 C -0.205 4.205 7 C -0.129 4.129 8 C -0.120 4.120 9 C -0.004 4.004 10 C -0.561 4.561 11 H 0.072 0.928 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.042 4.042 19 H 0.075 0.925 20 H 0.070 0.930 21 H 0.078 0.922 22 H 0.093 0.907 23 H 0.065 0.935 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.120 0.880 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.310 8.787 2.065 13.702 hybrid contribution 1.501 -0.932 0.689 1.896 sum -8.809 7.855 2.754 12.119 Atomic orbital electron populations 1.21768 0.95415 1.01259 1.01842 1.22176 0.95283 0.89277 1.02071 1.62842 1.12811 1.16043 1.33426 1.22242 1.00348 0.97487 0.87729 1.20980 0.95033 1.00461 0.99373 1.21827 0.95966 1.05118 0.97622 1.21971 0.98463 0.97295 0.95190 1.20863 0.89966 1.00365 1.00769 1.19016 0.96690 0.88389 0.96317 1.21240 0.92399 0.96985 1.45499 0.92750 1.25021 0.97265 0.96657 0.95440 1.69960 1.31996 1.05158 1.46298 0.86658 0.85361 0.77479 0.78508 1.20266 1.21265 1.20207 1.21068 0.85460 1.01507 0.96159 0.92529 0.93043 0.92248 0.90706 0.93480 0.90951 0.90735 0.91417 0.91259 0.87983 0.92681 0.92888 0.96781 0.96658 0.92955 0.89392 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.84 37.16 0.37 -1.37 16 2 C 0.04 0.59 5.09 -3.83 -0.02 0.57 16 3 N -0.53 -7.87 5.03 -236.11 -1.19 -9.06 16 4 C 0.05 0.65 5.66 -3.59 -0.02 0.63 16 5 C -0.12 -1.65 5.52 -28.03 -0.15 -1.80 16 6 C -0.19 -3.18 8.90 -35.89 -0.32 -3.50 16 7 C -0.13 -2.33 4.78 -101.01 -0.48 -2.81 16 8 C -0.08 -1.74 5.19 -27.88 -0.14 -1.88 16 9 C 0.03 0.86 4.95 -27.88 -0.14 0.73 16 10 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 11 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 14 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 C 0.09 1.41 5.65 -5.28 -0.03 1.38 16 19 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.05 0.57 6.67 -51.93 -0.35 0.22 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.07 1.19 7.92 -51.93 -0.41 0.78 16 23 H 0.05 0.78 5.49 -51.93 -0.29 0.49 16 24 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 25 H 0.07 0.85 6.74 -51.93 -0.35 0.50 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.96 6.80 -51.93 -0.35 0.61 16 28 H 0.10 1.80 7.81 -52.49 -0.41 1.39 16 29 H 0.05 1.14 8.12 -51.92 -0.42 0.71 16 30 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 31 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.09 1.55 7.89 -51.93 -0.41 1.14 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 277.60 15.07 4.18 4.18 Total: -1.00 -29.88 277.60 -8.54 -38.42 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -5.89 Total: -2.12 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -1.36 Total: -21.82 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.45 Total: -35.50 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.88 -8.54 -38.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260549925.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.099 kcal (2) G-P(sol) polarization free energy of solvation -29.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds