Wall clock time and date at job start Mon Mar 30 2020 02:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47254 * 2 1 4 4 C 1.47248 * 110.99640 * 66.04649 * 3 2 1 5 5 C 1.53085 * 108.47051 * 54.58629 * 4 3 2 6 6 C 1.50300 * 109.72187 * 48.96198 * 5 4 3 7 7 C 1.29825 * 122.89117 * 343.47605 * 6 5 4 8 8 C 1.50700 * 118.35843 * 180.41766 * 7 6 5 9 9 C 1.53001 * 109.47293 * 95.00429 * 8 7 6 10 10 C 1.50700 * 109.47293 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00092 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99798 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00209 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99856 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47216 * 59.99959 * 14 12 10 16 16 H 1.48502 * 109.47148 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47029 * 299.99625 * 14 12 10 18 18 C 1.46838 * 111.00030 * 188.97376 * 3 2 1 19 19 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47153 * 300.00004 * 1 2 3 21 21 H 1.08998 * 109.47533 * 59.99633 * 1 2 3 22 22 H 1.09002 * 109.47153 * 239.99996 * 2 1 3 23 23 H 1.09001 * 109.46832 * 120.00187 * 2 1 3 24 24 H 1.09004 * 109.63088 * 174.27561 * 4 3 2 25 25 H 1.08998 * 109.63526 * 294.88649 * 4 3 2 26 26 H 1.09001 * 109.42895 * 169.03976 * 5 4 3 27 27 H 1.09001 * 109.42861 * 288.93165 * 5 4 3 28 28 H 1.07994 * 118.55628 * 163.50265 * 6 5 4 29 29 H 1.09008 * 109.47448 * 215.00286 * 8 7 6 30 30 H 1.09001 * 109.47154 * 335.00330 * 8 7 6 31 31 H 1.09008 * 109.46757 * 300.00280 * 9 8 7 32 32 H 1.09001 * 109.47101 * 59.99869 * 9 8 7 33 33 H 0.96995 * 119.99836 * 180.02562 * 13 12 10 34 34 H 1.09007 * 109.33456 * 47.78833 * 18 3 2 35 35 H 1.09006 * 109.33817 * 167.29403 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6693 2.0684 1.2563 5 6 2.1963 1.2333 2.4261 6 6 3.6335 0.8677 2.1814 7 6 4.1932 0.9516 1.0130 8 6 5.6395 0.5492 0.8816 9 6 5.7238 -0.9087 0.4250 10 6 7.1702 -1.3109 0.2930 11 1 7.9512 -0.5982 0.5132 12 6 7.4963 -2.5891 -0.1078 13 7 6.5453 -3.4572 -0.3755 14 14 9.2891 -3.0879 -0.2707 15 1 9.9653 -2.9404 1.0431 16 1 9.3709 -4.5029 -0.7140 17 1 9.9562 -2.2170 -1.2715 18 6 3.4717 1.4297 -0.2138 19 1 -0.3635 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.1285 3.0569 1.2758 25 1 0.5861 2.1629 1.3322 26 1 2.1209 1.8112 3.3472 27 1 1.6023 0.3240 2.5190 28 1 4.2265 0.5194 3.0140 29 1 6.1294 1.1888 0.1473 30 1 6.1358 0.6571 1.8461 31 1 5.2339 -1.5483 1.1593 32 1 5.2276 -1.0166 -0.5395 33 1 6.7748 -4.3566 -0.6571 34 1 3.7321 0.7905 -1.0575 35 1 3.7728 2.4540 -0.4338 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260549925.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:13 Heat of formation + Delta-G solvation = -19.584996 kcal Electronic energy + Delta-G solvation = -14000.005354 eV Core-core repulsion = 11803.580549 eV Total energy + Delta-G solvation = -2196.424805 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.75471 -36.49147 -34.74185 -32.99446 -31.55552 -30.37865 -26.91854 -25.50306 -24.54320 -22.90150 -21.45002 -18.75946 -18.37548 -16.96518 -16.56462 -16.44748 -15.76106 -15.28718 -14.91672 -14.39913 -14.12751 -13.87563 -13.64890 -13.18414 -13.02037 -12.89707 -12.79311 -12.49521 -12.36320 -12.14082 -12.03643 -11.74456 -11.69831 -11.46763 -11.11222 -10.58828 -9.60898 -9.23360 -8.22931 -6.35707 1.29992 1.37809 1.40910 1.49131 2.38572 3.03141 3.09358 3.87788 3.91660 4.10775 4.20458 4.29757 4.44536 4.52600 4.60290 4.66933 4.68801 4.78545 4.85890 4.88168 4.91379 5.07917 5.11273 5.12637 5.15665 5.38170 5.44530 5.60372 5.65470 5.79424 6.01046 6.13739 6.20052 6.21466 6.80722 7.33919 8.88283 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047873 B = 0.006973 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.735266 B = 4014.675524 C = 4286.587631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.039 3.961 3 N -0.527 5.527 4 C 0.050 3.950 5 C -0.117 4.117 6 C -0.176 4.176 7 C -0.149 4.149 8 C -0.070 4.070 9 C 0.043 3.957 10 C -0.549 4.549 11 H 0.060 0.940 12 C 0.000 4.000 13 N -0.932 5.932 14 Si 0.967 3.033 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.265 1.265 18 C 0.091 3.909 19 H 0.063 0.937 20 H 0.066 0.934 21 H 0.065 0.935 22 H 0.053 0.947 23 H 0.027 0.973 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.051 0.949 31 H -0.019 1.019 32 H -0.011 1.011 33 H 0.264 0.736 34 H 0.065 0.935 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.396 9.882 3.114 14.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.089 4.089 3 N -0.249 5.249 4 C -0.077 4.077 5 C -0.155 4.155 6 C -0.195 4.195 7 C -0.150 4.150 8 C -0.108 4.108 9 C 0.006 3.994 10 C -0.587 4.587 11 H 0.078 0.922 12 C -0.198 4.198 13 N -0.572 5.572 14 Si 0.791 3.209 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.190 1.190 18 C -0.037 4.037 19 H 0.082 0.918 20 H 0.085 0.915 21 H 0.084 0.916 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.100 0.900 25 H 0.118 0.882 26 H 0.112 0.888 27 H 0.089 0.911 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.000 1.000 32 H 0.008 0.992 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.684 9.964 2.642 14.846 hybrid contribution 1.585 -1.313 0.557 2.132 sum -9.099 8.652 3.200 12.957 Atomic orbital electron populations 1.21706 0.92640 1.02149 1.02863 1.22171 0.97518 0.89122 1.00074 1.62900 1.11308 1.15860 1.34824 1.22389 1.01971 0.97316 0.86036 1.21033 0.92317 1.01105 1.01022 1.22110 0.97812 1.02879 0.96690 1.21864 0.96982 0.99477 0.96686 1.20626 0.92713 0.97031 1.00402 1.18828 0.95243 0.91279 0.94059 1.21694 0.93556 0.97650 1.45776 0.92155 1.26013 1.02447 0.96583 0.94729 1.70102 1.34591 1.05614 1.46932 0.85477 0.79107 0.77289 0.79047 1.19171 1.20662 1.18985 1.20981 0.86586 1.01717 0.94411 0.91816 0.91476 0.91630 0.92879 0.95514 0.89959 0.88165 0.88802 0.91053 0.89050 0.92242 0.93074 1.00022 0.99243 0.92715 0.91707 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.84 71.98 0.71 -2.26 16 2 C 0.04 1.16 5.09 86.30 0.44 1.60 16 3 N -0.53 -15.00 5.03 -900.90 -4.53 -19.53 16 4 C 0.05 1.16 5.66 86.27 0.49 1.65 16 5 C -0.12 -2.92 5.52 29.75 0.16 -2.76 16 6 C -0.18 -5.89 8.90 26.73 0.24 -5.65 16 7 C -0.15 -5.46 4.78 -15.45 -0.07 -5.53 16 8 C -0.07 -3.05 5.19 29.85 0.16 -2.89 16 9 C 0.04 2.37 4.95 29.85 0.15 2.51 16 10 C -0.55 -32.23 9.11 25.60 0.23 -32.00 16 11 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 12 C 0.00 0.01 5.46 84.65 0.46 0.47 16 13 N -0.93 -58.02 13.29 21.45 0.28 -57.73 16 14 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 18 C 0.09 2.99 5.65 85.39 0.48 3.47 16 19 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 20 H 0.07 1.26 6.67 -2.39 -0.02 1.24 16 21 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.05 1.76 7.92 -2.39 -0.02 1.74 16 23 H 0.03 0.89 5.49 -2.39 -0.01 0.88 16 24 H 0.08 1.77 8.08 -2.38 -0.02 1.76 16 25 H 0.10 1.85 6.74 -2.39 -0.02 1.83 16 26 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.07 1.82 6.80 -2.39 -0.02 1.80 16 28 H 0.09 3.21 7.81 -2.91 -0.02 3.19 16 29 H 0.06 2.50 8.12 -2.38 -0.02 2.48 16 30 H 0.05 2.20 7.84 -2.39 -0.02 2.18 16 31 H -0.02 -1.13 8.14 -2.38 -0.02 -1.15 16 32 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.06 2.40 7.89 -2.38 -0.02 2.38 16 35 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 Total: -1.00 -65.21 277.60 2.25 -62.96 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 1.03 Total: 8.70 kcal Atomic # 6 Polarization: -44.83 SS G_CDS: 3.44 Total: -41.39 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -4.25 Total: -77.27 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -65.21 2.25 -62.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260549925.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.372 kcal (2) G-P(sol) polarization free energy of solvation -65.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds