Wall clock time and date at job start Mon Mar 30 2020 02:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46907 * 109.46859 * 2 1 4 4 C 1.46834 * 110.99922 * 293.94976 * 3 2 1 5 5 C 1.50142 * 110.27541 * 174.31717 * 4 3 2 6 6 C 1.29824 * 123.28229 * 342.94558 * 5 4 3 7 7 C 1.50708 * 118.55374 * 180.08961 * 6 5 4 8 8 C 1.52999 * 109.46895 * 95.00501 * 7 6 5 9 9 C 1.50694 * 109.46885 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00289 * 359.97438 * 9 8 7 11 11 C 1.37883 * 119.99806 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00204 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99824 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46753 * 90.00127 * 13 11 9 15 15 H 1.48500 * 109.46646 * 209.99706 * 13 11 9 16 16 H 1.48495 * 109.47015 * 330.00014 * 13 11 9 17 17 C 1.50303 * 122.89556 * 0.37575 * 6 5 4 18 18 C 1.47236 * 111.00073 * 56.88423 * 3 2 1 19 19 H 1.09000 * 109.47567 * 300.00197 * 1 2 3 20 20 H 1.09007 * 109.46771 * 60.00555 * 1 2 3 21 21 H 1.09001 * 109.47307 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47125 * 239.99903 * 2 1 3 23 23 H 1.09001 * 109.46762 * 119.99908 * 2 1 3 24 24 H 1.09003 * 109.34026 * 54.07411 * 4 3 2 25 25 H 1.09001 * 109.34024 * 294.56424 * 4 3 2 26 26 H 1.08003 * 118.36194 * 162.92870 * 5 4 3 27 27 H 1.08998 * 109.47134 * 215.00457 * 7 6 5 28 28 H 1.08998 * 109.47002 * 335.00605 * 7 6 5 29 29 H 1.09007 * 109.46912 * 299.99874 * 8 7 6 30 30 H 1.08998 * 109.47211 * 60.00232 * 8 7 6 31 31 H 0.96998 * 119.99815 * 179.97438 * 12 11 9 32 32 H 1.09005 * 109.43619 * 103.57376 * 17 6 5 33 33 H 1.09001 * 109.43345 * 223.42680 * 17 6 5 34 34 H 1.09001 * 109.63673 * 287.49956 * 18 3 2 35 35 H 1.09002 * 109.63921 * 47.90301 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6703 2.0666 -1.2528 5 6 2.0547 3.5163 -1.1811 6 6 2.3113 4.1310 -0.0668 7 6 2.6853 5.5900 -0.1186 8 6 1.4371 6.4448 0.1100 9 6 1.8110 7.9037 0.0576 10 1 2.8363 8.1924 -0.1205 11 6 0.8441 8.8701 0.2380 12 7 -0.4044 8.5186 0.4553 13 14 1.3077 10.6786 0.1738 14 1 1.1867 11.1712 -1.2219 15 1 0.3969 11.4545 1.0533 16 1 2.7078 10.8474 0.6387 17 6 2.2579 3.4502 1.2721 18 6 1.4875 2.1329 1.1513 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 0.5963 1.9860 -1.4203 25 1 2.1988 1.5937 -2.0805 26 1 2.1213 4.0755 -2.1027 27 1 3.4198 5.8046 0.6576 28 1 3.1105 5.8216 -1.0951 29 1 0.7026 6.2302 -0.6664 30 1 1.0119 6.2132 1.0865 31 1 -1.0845 9.1984 0.5826 32 1 3.2719 3.2469 1.6164 33 1 1.7557 4.0995 1.9893 34 1 0.4288 2.3406 0.9955 35 1 1.6154 1.5454 2.0605 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260554557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:16 Heat of formation + Delta-G solvation = -2.249796 kcal Electronic energy + Delta-G solvation = -13745.248860 eV Core-core repulsion = 11549.575766 eV Total energy + Delta-G solvation = -2195.673095 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.13609 -35.46500 -33.01856 -30.95925 -30.50239 -28.64545 -25.66145 -23.62954 -23.30312 -21.36176 -20.22160 -17.03095 -16.29601 -15.75705 -15.26050 -14.56143 -14.34763 -13.94910 -13.34923 -13.19657 -12.88620 -12.34830 -12.28676 -11.93078 -11.72480 -11.55303 -11.17543 -11.06259 -10.88809 -10.60869 -10.56479 -10.10047 -9.69986 -9.51404 -9.02713 -8.34447 -8.30881 -7.92218 -5.97529 -4.00062 2.85642 3.33401 3.39421 3.43231 4.06847 4.48110 4.93609 5.02870 5.18178 5.32412 5.36167 5.38026 5.53589 5.63727 5.65944 5.67877 5.81123 5.90665 5.94566 6.13368 6.22084 6.36598 6.40792 6.57939 6.76346 6.87508 7.12347 7.16977 7.40941 7.60456 7.71680 7.90581 8.03507 8.45247 9.07289 9.63809 11.13601 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.064465 B = 0.005871 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.242411 B = 4768.078739 C = 4864.644927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.049 3.951 3 N -0.533 5.533 4 C 0.089 3.911 5 C -0.196 4.196 6 C -0.085 4.085 7 C -0.084 4.084 8 C 0.030 3.970 9 C -0.521 4.521 10 H 0.055 0.945 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.080 4.080 18 C 0.052 3.948 19 H 0.058 0.942 20 H 0.058 0.942 21 H 0.058 0.942 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.260 0.740 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.732 -14.800 -0.367 15.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.079 4.079 3 N -0.256 5.256 4 C -0.038 4.038 5 C -0.214 4.214 6 C -0.085 4.085 7 C -0.122 4.122 8 C -0.007 4.007 9 C -0.559 4.559 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.118 4.118 18 C -0.076 4.076 19 H 0.077 0.923 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.126 0.874 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.033 0.967 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.086 -14.736 -0.295 15.058 hybrid contribution -0.841 1.100 -0.171 1.395 sum 2.246 -13.635 -0.466 13.827 Atomic orbital electron populations 1.22465 0.98370 1.02043 1.02474 1.22166 0.92834 0.90492 1.02454 1.62658 1.58328 1.01637 1.03010 1.20890 0.98275 0.92893 0.91744 1.21823 1.06647 0.94612 0.98315 1.21246 0.96806 0.96369 0.94096 1.20894 1.00596 0.89888 1.00772 1.19041 0.91429 0.93140 0.97057 1.21293 0.94498 0.91418 1.48680 0.92673 1.25027 0.94998 0.99062 0.95352 1.69973 1.00836 1.33366 1.49379 0.86602 0.78353 0.85196 0.77910 1.20682 1.21241 1.19849 1.20504 1.00743 0.94471 0.96034 1.22203 0.97128 0.94931 0.93306 0.92257 0.92337 0.92333 0.90949 0.90832 0.94100 0.90679 0.87446 0.92712 0.92778 0.96657 0.96619 0.93050 0.90654 0.90246 0.94177 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.01 9.21 37.16 0.34 -1.67 16 2 C 0.05 0.53 6.06 -3.82 -0.02 0.51 16 3 N -0.53 -7.39 4.93 -236.12 -1.16 -8.55 16 4 C 0.09 1.30 5.49 -5.28 -0.03 1.27 16 5 C -0.20 -3.41 9.50 -35.97 -0.34 -3.75 16 6 C -0.08 -1.59 5.15 -100.92 -0.52 -2.11 16 7 C -0.08 -1.82 5.21 -27.88 -0.15 -1.96 16 8 C 0.03 0.80 4.95 -27.89 -0.14 0.67 16 9 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 10 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 13 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 C -0.08 -1.32 6.04 -28.03 -0.17 -1.49 16 18 C 0.05 0.75 4.67 -3.59 -0.02 0.73 16 19 H 0.06 0.65 6.64 -51.93 -0.35 0.30 16 20 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.04 0.59 6.21 -51.93 -0.32 0.27 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.11 1.88 7.81 -52.48 -0.41 1.47 16 27 H 0.05 1.15 8.12 -51.93 -0.42 0.73 16 28 H 0.05 1.15 7.85 -51.93 -0.41 0.75 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.04 0.61 6.96 -51.93 -0.36 0.24 16 35 H 0.07 0.89 8.06 -51.93 -0.42 0.47 16 LS Contribution 279.19 15.07 4.21 4.21 Total: -1.00 -30.41 279.19 -8.64 -39.05 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -5.94 Total: -3.38 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -1.45 Total: -21.59 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.43 Total: -35.16 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.41 -8.64 -39.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260554557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.796 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds