Wall clock time and date at job start Mon Mar 30 2020 02:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46907 * 109.46859 * 2 1 4 4 C 1.46834 * 110.99922 * 293.94976 * 3 2 1 5 5 C 1.50142 * 110.27541 * 174.31717 * 4 3 2 6 6 C 1.29824 * 123.28229 * 342.94558 * 5 4 3 7 7 C 1.50708 * 118.55374 * 180.08961 * 6 5 4 8 8 C 1.52999 * 109.46895 * 95.00501 * 7 6 5 9 9 C 1.50694 * 109.46885 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00289 * 359.97438 * 9 8 7 11 11 C 1.37883 * 119.99806 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00204 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99824 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46753 * 90.00127 * 13 11 9 15 15 H 1.48500 * 109.46646 * 209.99706 * 13 11 9 16 16 H 1.48495 * 109.47015 * 330.00014 * 13 11 9 17 17 C 1.50303 * 122.89556 * 0.37575 * 6 5 4 18 18 C 1.47236 * 111.00073 * 56.88423 * 3 2 1 19 19 H 1.09000 * 109.47567 * 300.00197 * 1 2 3 20 20 H 1.09007 * 109.46771 * 60.00555 * 1 2 3 21 21 H 1.09001 * 109.47307 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47125 * 239.99903 * 2 1 3 23 23 H 1.09001 * 109.46762 * 119.99908 * 2 1 3 24 24 H 1.09003 * 109.34026 * 54.07411 * 4 3 2 25 25 H 1.09001 * 109.34024 * 294.56424 * 4 3 2 26 26 H 1.08003 * 118.36194 * 162.92870 * 5 4 3 27 27 H 1.08998 * 109.47134 * 215.00457 * 7 6 5 28 28 H 1.08998 * 109.47002 * 335.00605 * 7 6 5 29 29 H 1.09007 * 109.46912 * 299.99874 * 8 7 6 30 30 H 1.08998 * 109.47211 * 60.00232 * 8 7 6 31 31 H 0.96998 * 119.99815 * 179.97438 * 12 11 9 32 32 H 1.09005 * 109.43619 * 103.57376 * 17 6 5 33 33 H 1.09001 * 109.43345 * 223.42680 * 17 6 5 34 34 H 1.09001 * 109.63673 * 287.49956 * 18 3 2 35 35 H 1.09002 * 109.63921 * 47.90301 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6703 2.0666 -1.2528 5 6 2.0547 3.5163 -1.1811 6 6 2.3113 4.1310 -0.0668 7 6 2.6853 5.5900 -0.1186 8 6 1.4371 6.4448 0.1100 9 6 1.8110 7.9037 0.0576 10 1 2.8363 8.1924 -0.1205 11 6 0.8441 8.8701 0.2380 12 7 -0.4044 8.5186 0.4553 13 14 1.3077 10.6786 0.1738 14 1 1.1867 11.1712 -1.2219 15 1 0.3969 11.4545 1.0533 16 1 2.7078 10.8474 0.6387 17 6 2.2579 3.4502 1.2721 18 6 1.4875 2.1329 1.1513 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 0.5963 1.9860 -1.4203 25 1 2.1988 1.5937 -2.0805 26 1 2.1213 4.0755 -2.1027 27 1 3.4198 5.8046 0.6576 28 1 3.1105 5.8216 -1.0951 29 1 0.7026 6.2302 -0.6664 30 1 1.0119 6.2132 1.0865 31 1 -1.0845 9.1984 0.5826 32 1 3.2719 3.2469 1.6164 33 1 1.7557 4.0995 1.9893 34 1 0.4288 2.3406 0.9955 35 1 1.6154 1.5454 2.0605 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260554557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:16 Heat of formation + Delta-G solvation = -20.730126 kcal Electronic energy + Delta-G solvation = -13746.050228 eV Core-core repulsion = 11549.575766 eV Total energy + Delta-G solvation = -2196.474462 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.32332 -36.94363 -34.99881 -32.54752 -31.76013 -30.05309 -27.32928 -25.18320 -24.50143 -22.89704 -21.67556 -18.71235 -18.08075 -16.97367 -16.54545 -16.40067 -15.62494 -15.15896 -14.77014 -14.73243 -14.23235 -13.97790 -13.65561 -13.31453 -13.09579 -12.90068 -12.77317 -12.69778 -12.41993 -12.16206 -11.78886 -11.63410 -11.52181 -11.43976 -10.98287 -10.56883 -9.62225 -9.18316 -8.21092 -6.33355 1.38073 1.40805 1.41577 1.52500 2.40424 3.02229 3.11423 3.84249 3.92174 4.14021 4.31190 4.36087 4.38225 4.43370 4.55299 4.60198 4.70284 4.74286 4.84136 4.93994 4.98719 5.05470 5.09033 5.13311 5.19518 5.33959 5.48242 5.60624 5.65023 5.82619 6.05335 6.19323 6.24963 6.29856 6.83442 7.36139 8.90478 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.064465 B = 0.005871 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.242411 B = 4768.078739 C = 4864.644927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.049 3.951 3 N -0.540 5.540 4 C 0.091 3.909 5 C -0.186 4.186 6 C -0.111 4.111 7 C -0.072 4.072 8 C 0.039 3.961 9 C -0.546 4.546 10 H 0.060 0.940 11 C 0.000 4.000 12 N -0.934 5.934 13 Si 0.967 3.033 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.262 1.262 17 C -0.078 4.078 18 C 0.058 3.942 19 H 0.049 0.951 20 H 0.047 0.953 21 H 0.077 0.923 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.044 0.956 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.053 0.947 29 H -0.015 1.015 30 H -0.009 1.009 31 H 0.264 0.736 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.537 -15.622 -0.530 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.079 4.079 3 N -0.264 5.264 4 C -0.036 4.036 5 C -0.205 4.205 6 C -0.111 4.111 7 C -0.109 4.109 8 C 0.002 3.998 9 C -0.584 4.584 10 H 0.078 0.922 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.791 3.209 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.186 1.186 17 C -0.116 4.116 18 C -0.070 4.070 19 H 0.068 0.932 20 H 0.066 0.934 21 H 0.096 0.904 22 H 0.104 0.896 23 H 0.106 0.894 24 H 0.062 0.938 25 H 0.114 0.886 26 H 0.120 0.880 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.003 0.997 30 H 0.009 0.991 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.902 -15.577 -0.462 16.065 hybrid contribution -1.115 1.311 -0.160 1.728 sum 2.787 -14.266 -0.622 14.549 Atomic orbital electron populations 1.22425 0.98051 1.03032 1.01493 1.22279 0.93061 0.88652 1.03886 1.62664 1.58664 1.02869 1.02187 1.20905 0.98654 0.91040 0.93043 1.22115 1.04297 0.96451 0.97599 1.21218 0.99006 0.94949 0.95935 1.20660 0.98179 0.91413 1.00651 1.18878 0.92825 0.93616 0.94525 1.21726 0.94937 0.92764 1.48950 0.92174 1.26008 0.94782 1.04416 0.94578 1.70109 1.02059 1.35224 1.50042 0.85420 0.78530 0.78629 0.78310 1.19726 1.20587 1.18640 1.20484 1.01560 0.95258 0.94264 1.22139 0.95903 0.94242 0.94717 0.93186 0.93365 0.90362 0.89564 0.89403 0.93785 0.88608 0.88021 0.92473 0.92875 0.99652 0.99059 0.92739 0.89607 0.91804 0.95434 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.51 9.21 71.98 0.66 -2.85 16 2 C 0.05 0.91 6.06 86.30 0.52 1.43 16 3 N -0.54 -13.78 4.93 -900.94 -4.44 -18.22 16 4 C 0.09 2.49 5.49 85.39 0.47 2.96 16 5 C -0.19 -6.43 9.50 26.68 0.25 -6.17 16 6 C -0.11 -4.19 5.15 -15.40 -0.08 -4.27 16 7 C -0.07 -3.17 5.21 29.85 0.16 -3.01 16 8 C 0.04 2.13 4.95 29.85 0.15 2.28 16 9 C -0.55 -32.08 9.11 25.60 0.23 -31.85 16 10 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 11 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 12 N -0.93 -58.13 13.29 21.45 0.28 -57.85 16 13 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 16 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 17 C -0.08 -2.56 6.04 29.75 0.18 -2.38 16 18 C 0.06 1.58 4.67 86.27 0.40 1.98 16 19 H 0.05 1.01 6.64 -2.39 -0.02 0.99 16 20 H 0.05 0.98 6.43 -2.38 -0.02 0.96 16 21 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.09 1.41 8.12 -2.39 -0.02 1.39 16 23 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.04 1.21 6.21 -2.39 -0.01 1.19 16 25 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.10 3.55 7.81 -2.91 -0.02 3.53 16 27 H 0.06 2.45 8.12 -2.39 -0.02 2.43 16 28 H 0.05 2.31 7.85 -2.39 -0.02 2.29 16 29 H -0.01 -0.90 8.14 -2.38 -0.02 -0.92 16 30 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 31 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 32 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 33 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.03 0.82 6.96 -2.39 -0.02 0.80 16 35 H 0.10 2.14 8.06 -2.39 -0.02 2.12 16 Total: -1.00 -65.49 279.19 2.31 -63.18 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 1.03 Total: 7.29 kcal Atomic # 6 Polarization: -44.83 SS G_CDS: 3.41 Total: -41.42 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -4.16 Total: -76.07 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.49 2.31 -63.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260554557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.448 kcal (2) G-P(sol) polarization free energy of solvation -65.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds