Wall clock time and date at job start Mon Mar 30 2020 03:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30994 * 1 3 3 Si 1.86800 * 119.99612 * 2 1 4 4 H 1.48511 * 109.47049 * 269.99357 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99431 * 3 2 1 6 6 H 1.48502 * 109.47120 * 150.00150 * 3 2 1 7 7 C 1.39956 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99570 * 180.28009 * 7 2 1 9 9 C 1.39835 * 119.99830 * 0.02562 * 7 2 1 10 10 S 1.75214 * 124.93817 * 359.69672 * 9 7 2 11 11 C 1.70060 * 92.20103 * 179.97438 * 10 9 7 12 12 C 1.38297 * 111.46834 * 0.35353 * 11 10 9 13 13 C 1.39702 * 113.95100 * 359.71735 * 12 11 10 14 14 O 1.36649 * 111.10163 * 179.97438 * 13 12 11 15 15 C 1.42467 * 110.47324 * 0.02562 * 14 13 12 16 16 C 1.48129 * 138.27440 * 179.71487 * 12 11 10 17 17 O 1.21349 * 127.68530 * 359.97438 * 16 12 11 18 18 H 0.96996 * 120.00046 * 0.02562 * 1 2 3 19 19 H 1.08004 * 124.26038 * 180.02562 * 11 10 9 20 20 H 1.08995 * 110.14048 * 240.86358 * 15 14 13 21 21 H 1.08995 * 110.20789 * 119.16376 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2438 1.6178 0.0000 4 1 2.4914 2.0464 -1.4002 5 1 1.4412 2.6527 0.6999 6 1 3.5414 1.4403 0.7000 7 6 2.0098 -1.2120 0.0005 8 1 3.0898 -1.2119 0.0051 9 6 1.3106 -2.4230 0.0005 10 16 -0.4350 -2.5739 0.0075 11 6 -0.3537 -4.2726 0.0023 12 6 0.9560 -4.7167 0.0034 13 6 1.9031 -3.6897 0.0022 14 8 3.1738 -4.1923 0.0039 15 6 3.1462 -5.6167 0.0059 16 6 1.6864 -6.0053 0.0056 17 8 1.2167 -7.1243 0.0077 18 1 -0.4850 0.8400 -0.0004 19 1 -1.2163 -4.9225 0.0037 20 1 3.6364 -6.0003 0.9007 21 1 3.6381 -6.0040 -0.8863 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260559528.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:13 Heat of formation + Delta-G solvation = -68.141621 kcal Electronic energy + Delta-G solvation = -11288.344605 eV Core-core repulsion = 9027.349152 eV Total energy + Delta-G solvation = -2260.995453 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 210.014 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.59813 -38.96187 -36.46598 -35.20155 -31.39387 -29.35044 -26.75274 -25.33063 -21.39661 -20.59390 -19.49101 -17.79569 -17.25748 -17.21629 -16.33950 -15.79191 -15.55282 -14.69210 -14.68808 -14.16123 -13.72509 -13.62272 -12.86733 -12.81363 -12.36136 -11.95006 -11.70547 -11.54957 -11.28107 -10.48020 -9.51284 -8.87212 -8.71802 -6.35339 -0.07132 0.90684 1.36384 1.42445 1.57044 1.59755 1.71876 2.19025 2.19732 2.86812 2.98609 3.23171 3.90475 4.30802 4.43757 4.50741 5.01426 5.07908 5.38820 5.54768 5.95695 6.09917 6.38838 6.57771 6.63759 8.05200 Molecular weight = 210.01amu Principal moments of inertia in cm(-1) A = 0.052182 B = 0.011042 C = 0.009159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.451499 B = 2535.188883 C = 3056.451993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.015 3.985 3 Si 1.010 2.990 4 H -0.259 1.259 5 H -0.258 1.258 6 H -0.260 1.260 7 C -0.399 4.399 8 H 0.093 0.907 9 C -0.046 4.046 10 S 0.322 5.678 11 C -0.391 4.391 12 C -0.244 4.244 13 C -0.129 4.129 14 O -0.302 6.302 15 C 0.019 3.981 16 C 0.394 3.606 17 O -0.485 6.485 18 H 0.314 0.686 19 H 0.141 0.859 20 H 0.138 0.862 21 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.302 2.216 0.017 3.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.201 4.201 3 Si 0.829 3.171 4 H -0.183 1.183 5 H -0.182 1.182 6 H -0.184 1.184 7 C -0.436 4.436 8 H 0.111 0.889 9 C -0.167 4.167 10 S 0.588 5.412 11 C -0.530 4.530 12 C -0.259 4.259 13 C -0.176 4.176 14 O -0.219 6.219 15 C -0.057 4.057 16 C 0.274 3.726 17 O -0.365 6.365 18 H 0.127 0.873 19 H 0.159 0.841 20 H 0.156 0.844 21 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.834 2.865 0.031 2.984 hybrid contribution 1.226 -0.964 -0.016 1.560 sum 2.060 1.902 0.016 2.804 Atomic orbital electron populations 1.68617 1.08605 1.32656 1.34255 1.27029 0.95952 1.05266 0.91893 0.84714 0.78566 0.73964 0.79843 1.18342 1.18171 1.18386 1.19342 0.95832 0.89299 1.39099 0.88941 1.21657 0.97558 0.93334 1.04113 1.83062 0.99547 0.90788 1.67804 1.25616 0.97912 1.06358 1.23084 1.20880 0.94659 0.96206 1.14133 1.18937 0.83125 0.92546 1.22985 1.86331 1.23884 1.19104 1.92556 1.23468 0.94515 0.81014 1.06748 1.23308 0.93000 0.86861 0.69396 1.90450 1.78446 1.25974 1.41661 0.87276 0.84097 0.84431 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -36.06 10.60 21.84 0.23 -35.82 14 2 C 0.01 0.66 5.50 85.23 0.47 1.13 14 3 Si 1.01 33.50 29.56 68.60 2.03 35.52 14 4 H -0.26 -8.32 7.11 99.48 0.71 -7.62 14 5 H -0.26 -7.90 7.11 99.48 0.71 -7.19 14 6 H -0.26 -8.66 7.11 99.48 0.71 -7.95 14 7 C -0.40 -20.01 9.27 23.07 0.21 -19.80 14 8 H 0.09 4.58 7.85 -2.91 -0.02 4.56 14 9 C -0.05 -2.43 6.19 23.04 0.14 -2.28 14 10 S 0.32 15.27 19.87 -56.49 -1.12 14.14 14 11 C -0.39 -19.03 11.04 67.83 0.75 -18.28 14 12 C -0.24 -12.22 6.61 -20.28 -0.13 -12.36 14 13 C -0.13 -6.71 7.52 23.01 0.17 -6.54 14 14 O -0.30 -14.08 11.01 -101.08 -1.11 -15.19 14 15 C 0.02 0.68 7.90 71.35 0.56 1.25 14 16 C 0.39 17.47 8.05 28.43 0.23 17.70 14 17 O -0.48 -22.47 18.03 -3.24 -0.06 -22.53 14 18 H 0.31 12.18 8.30 -92.71 -0.77 11.41 14 19 H 0.14 6.35 8.06 -2.91 -0.02 6.33 14 20 H 0.14 4.02 8.14 -2.39 -0.02 4.00 14 21 H 0.14 4.02 8.14 -2.39 -0.02 4.00 14 Total: -1.00 -59.17 212.96 3.64 -55.53 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 1.27 Total: 7.53 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 2.41 Total: -39.18 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.23 Total: -35.82 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -1.17 Total: -37.72 kcal Atomic # 14 Polarization: 33.50 SS G_CDS: 2.03 Total: 35.52 kcal Atomic # 16 Polarization: 15.27 SS G_CDS: -1.12 Total: 14.14 kcal Total: -59.17 3.64 -55.53 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260559528.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.613 kcal (2) G-P(sol) polarization free energy of solvation -59.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds