Wall clock time and date at job start Mon Mar 30 2020 02:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35023 * 1 3 3 C 1.40072 * 120.00263 * 2 1 4 4 H 1.07996 * 120.00387 * 154.99685 * 3 2 1 5 5 C 1.40312 * 119.99830 * 334.98872 * 3 2 1 6 6 N 1.30689 * 119.99955 * 342.80278 * 5 3 2 7 7 Si 1.86794 * 120.00085 * 162.79305 * 5 3 2 8 8 H 1.48499 * 109.47116 * 90.00453 * 7 5 3 9 9 H 1.48505 * 109.47430 * 210.00388 * 7 5 3 10 10 H 1.48500 * 109.47497 * 330.00377 * 7 5 3 11 11 C 1.50706 * 120.00114 * 179.97438 * 2 1 3 12 12 H 1.08996 * 109.49884 * 0.07895 * 11 2 1 13 13 C 1.53121 * 109.50386 * 240.00188 * 11 2 1 14 14 C 1.53113 * 109.16174 * 182.40239 * 13 11 2 15 15 C 1.53037 * 109.28060 * 57.65439 * 14 13 11 16 16 N 1.46846 * 109.52136 * 300.82407 * 15 14 13 17 17 C 1.46905 * 110.99673 * 185.83600 * 16 15 14 18 18 C 1.52997 * 109.47355 * 66.04957 * 17 16 15 19 19 C 1.46846 * 111.20097 * 61.73815 * 16 15 14 20 20 H 1.08004 * 120.00377 * 354.28760 * 1 2 3 21 21 H 1.08003 * 119.99818 * 174.28372 * 1 2 3 22 22 H 0.96996 * 120.00354 * 179.97438 * 6 5 3 23 23 H 1.09007 * 109.52127 * 62.49695 * 13 11 2 24 24 H 1.08997 * 109.57569 * 302.33926 * 13 11 2 25 25 H 1.08998 * 109.50553 * 297.71075 * 14 13 11 26 26 H 1.09004 * 109.50548 * 177.59607 * 14 13 11 27 27 H 1.08998 * 109.47032 * 180.80317 * 15 14 13 28 28 H 1.09002 * 109.45465 * 60.82691 * 15 14 13 29 29 H 1.08997 * 109.47319 * 306.04328 * 17 16 15 30 30 H 1.09009 * 109.46971 * 186.04507 * 17 16 15 31 31 H 1.08997 * 109.47421 * 59.99433 * 18 17 16 32 32 H 1.08999 * 109.47230 * 180.02562 * 18 17 16 33 33 H 1.09009 * 109.46714 * 299.99708 * 18 17 16 34 34 H 1.08999 * 109.45970 * 58.27386 * 19 16 15 35 35 H 1.09002 * 109.46110 * 178.24068 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3502 0.0000 0.0000 3 6 2.0506 1.2130 0.0000 4 1 3.0547 1.2569 0.3953 5 6 1.4478 2.3712 -0.5138 6 7 0.3971 2.2739 -1.2848 7 14 2.1468 4.0521 -0.0954 8 1 3.1635 4.4317 -1.1091 9 1 1.0527 5.0563 -0.0917 10 1 2.7799 4.0050 1.2470 11 6 2.1038 -1.3051 0.0006 12 1 1.3959 -2.1339 -0.0005 13 6 2.9844 -1.3865 1.2506 14 6 3.7910 -2.6873 1.2133 15 6 4.6260 -2.7276 -0.0685 16 7 3.7380 -2.6476 -1.2353 17 6 4.4921 -2.8225 -2.4838 18 6 5.0498 -4.2458 -2.5478 19 6 2.9876 -1.3854 -1.2461 20 1 -0.5401 0.9307 0.0931 21 1 -0.5400 -0.9307 -0.0932 22 1 -0.0199 3.0745 -1.6397 23 1 2.3553 -1.3733 2.1408 24 1 3.6656 -0.5360 1.2734 25 1 3.1102 -3.5384 1.2311 26 1 4.4515 -2.7310 2.0794 27 1 5.1908 -3.6591 -0.1051 28 1 5.3161 -1.8839 -0.0790 29 1 5.3148 -2.1082 -2.5144 30 1 3.8316 -2.6526 -3.3341 31 1 4.2271 -4.9601 -2.5171 32 1 5.6097 -4.3754 -3.4739 33 1 5.7103 -4.4157 -1.6974 34 1 3.6855 -0.5481 -1.2510 35 1 2.3624 -1.3421 -2.1380 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260580919.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:20 Heat of formation + Delta-G solvation = -15.869701 kcal Electronic energy + Delta-G solvation = -14276.634414 eV Core-core repulsion = 12080.370716 eV Total energy + Delta-G solvation = -2196.263698 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.17892 -36.99469 -34.97239 -33.01719 -31.09682 -29.62400 -27.20805 -25.31249 -23.96368 -22.43500 -20.88320 -20.57033 -17.62280 -17.12118 -16.51670 -16.05358 -15.51371 -15.24977 -14.81372 -14.56892 -14.25749 -13.95257 -13.40558 -13.14296 -12.88504 -12.76544 -12.62366 -12.36077 -12.24152 -12.09481 -11.91440 -11.63796 -11.30532 -11.15578 -10.84987 -10.83613 -9.29025 -9.21403 -8.45978 -6.19850 1.29115 1.37118 1.49478 2.08330 2.27967 3.00832 3.36317 4.00254 4.06836 4.11295 4.25504 4.38079 4.50943 4.58438 4.64984 4.70876 4.78683 4.87369 4.96616 5.02408 5.10688 5.17127 5.18699 5.26157 5.30372 5.38307 5.49588 5.54347 5.59433 6.08287 6.20872 6.27679 6.34855 6.93247 7.19167 7.43636 8.55337 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.037030 B = 0.008719 C = 0.008441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.962340 B = 3210.787848 C = 3316.525756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.379 4.379 2 C 0.036 3.964 3 C -0.494 4.494 4 H 0.064 0.936 5 C 0.029 3.971 6 N -0.835 5.835 7 Si 0.965 3.035 8 H -0.265 1.265 9 H -0.273 1.273 10 H -0.259 1.259 11 C -0.039 4.039 12 H 0.048 0.952 13 C -0.102 4.102 14 C -0.109 4.109 15 C 0.055 3.945 16 N -0.547 5.547 17 C 0.044 3.956 18 C -0.137 4.137 19 C 0.091 3.909 20 H 0.062 0.938 21 H 0.041 0.959 22 H 0.276 0.724 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.023 0.977 29 H 0.029 0.971 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.020 0.980 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.231 -7.830 0.476 12.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.420 4.420 2 C 0.034 3.966 3 C -0.525 4.525 4 H 0.082 0.918 5 C -0.183 4.183 6 N -0.462 5.462 7 Si 0.787 3.213 8 H -0.190 1.190 9 H -0.198 1.198 10 H -0.183 1.183 11 C -0.058 4.058 12 H 0.066 0.934 13 C -0.140 4.140 14 C -0.146 4.146 15 C -0.073 4.073 16 N -0.272 5.272 17 C -0.083 4.083 18 C -0.194 4.194 19 C -0.036 4.036 20 H 0.080 0.920 21 H 0.060 0.940 22 H 0.086 0.914 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.116 0.884 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.758 -8.103 0.359 12.689 hybrid contribution 0.131 1.778 -0.212 1.795 sum 9.889 -6.325 0.147 11.740 Atomic orbital electron populations 1.23156 0.95379 0.96309 1.27123 1.18741 0.92924 0.92661 0.92312 1.19301 1.00999 0.94036 1.38192 0.91828 1.26667 0.94794 1.04386 0.92480 1.69940 1.20302 1.31480 1.24504 0.85483 0.78651 0.77379 0.79806 1.18959 1.19823 1.18338 1.20135 0.95850 0.95063 0.94760 0.93370 1.21467 0.97861 0.97931 0.96693 1.21594 0.98789 0.97009 0.97240 1.22192 0.93872 1.01167 0.90034 1.62027 1.27685 1.34188 1.03327 1.22154 0.96057 0.98494 0.91619 1.21736 1.00856 0.94410 1.02422 1.21690 0.95322 0.89098 0.97531 0.91964 0.94015 0.91356 0.92823 0.93242 0.91379 0.89446 0.88405 0.95831 0.95313 0.91781 0.92308 0.90754 0.91905 0.96222 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.38 -22.27 12.93 67.08 0.87 -21.41 16 2 C 0.04 1.96 4.58 -20.16 -0.09 1.87 16 3 C -0.49 -27.56 8.05 23.22 0.19 -27.37 16 4 H 0.06 3.41 6.93 -2.91 -0.02 3.39 16 5 C 0.03 1.59 5.09 85.37 0.43 2.02 16 6 N -0.83 -48.07 11.03 21.89 0.24 -47.82 16 7 Si 0.96 41.37 29.60 68.60 2.03 43.40 16 8 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 9 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 10 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 11 C -0.04 -1.78 2.52 -11.49 -0.03 -1.81 16 12 H 0.05 2.24 7.84 -2.39 -0.02 2.22 16 13 C -0.10 -3.92 5.13 30.67 0.16 -3.76 16 14 C -0.11 -3.20 6.09 30.64 0.19 -3.01 16 15 C 0.05 1.57 5.29 86.33 0.46 2.03 16 16 N -0.55 -18.39 4.65 -896.36 -4.17 -22.56 16 17 C 0.04 1.25 5.68 86.30 0.49 1.74 16 18 C -0.14 -2.86 9.85 71.98 0.71 -2.15 16 19 C 0.09 3.88 4.57 86.32 0.39 4.27 16 20 H 0.06 3.92 6.26 -2.91 -0.02 3.91 16 21 H 0.04 2.34 7.91 -2.91 -0.02 2.32 16 22 H 0.28 14.60 8.29 -92.71 -0.77 13.83 16 23 H 0.05 2.06 8.14 -2.38 -0.02 2.05 16 24 H 0.05 1.99 7.03 -2.39 -0.02 1.98 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.10 2.25 6.22 -2.39 -0.01 2.24 16 28 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 29 H 0.03 0.80 8.12 -2.39 -0.02 0.78 16 30 H 0.06 1.87 7.98 -2.38 -0.02 1.85 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.19 6.44 -2.38 -0.02 1.17 16 34 H 0.02 0.89 7.71 -2.39 -0.02 0.87 16 35 H 0.04 2.07 8.01 -2.39 -0.02 2.06 16 Total: -1.00 -62.46 273.99 2.89 -59.57 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 1.03 Total: 14.98 kcal Atomic # 6 Polarization: -51.33 SS G_CDS: 3.76 Total: -47.57 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: -3.93 Total: -70.38 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -62.46 2.89 -59.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260580919.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.700 kcal (2) G-P(sol) polarization free energy of solvation -62.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds