Wall clock time and date at job start Mon Mar 30 2020 02:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47845 * 110.99852 * 2 1 4 4 C 1.54914 * 104.79513 * 146.36396 * 3 2 1 5 5 C 1.55392 * 101.74194 * 323.01915 * 4 3 2 6 6 C 1.47436 * 111.00312 * 120.84483 * 2 1 3 7 7 H 1.09000 * 109.89319 * 117.17349 * 6 2 1 8 8 C 1.53007 * 109.88760 * 356.14536 * 6 2 1 9 9 H 1.09003 * 109.46669 * 53.51834 * 8 6 2 10 10 C 1.50695 * 109.47481 * 293.51873 * 8 6 2 11 11 H 1.08006 * 119.99649 * 330.23257 * 10 8 6 12 12 C 1.37873 * 120.00183 * 150.22831 * 10 8 6 13 13 N 1.31519 * 120.00057 * 352.14761 * 12 10 8 14 14 Si 1.86801 * 120.00196 * 172.14477 * 12 10 8 15 15 H 1.48497 * 109.47493 * 180.02562 * 14 12 10 16 16 H 1.48500 * 109.46853 * 300.00466 * 14 12 10 17 17 H 1.48500 * 109.47003 * 60.00070 * 14 12 10 18 18 C 1.52998 * 109.47061 * 173.51159 * 8 6 2 19 19 C 1.53000 * 117.50507 * 245.47901 * 18 8 6 20 20 C 1.53004 * 117.49554 * 176.81882 * 18 8 6 21 21 H 1.08997 * 109.47336 * 308.78283 * 1 2 3 22 22 H 1.08999 * 109.47201 * 68.78607 * 1 2 3 23 23 H 1.09002 * 109.46846 * 188.78285 * 1 2 3 24 24 H 1.09006 * 110.37781 * 265.19389 * 3 2 1 25 25 H 1.09000 * 110.37632 * 27.42373 * 3 2 1 26 26 H 1.08997 * 110.98821 * 81.02632 * 4 3 2 27 27 H 1.09000 * 110.98480 * 204.80249 * 4 3 2 28 28 H 1.09003 * 110.68023 * 277.18064 * 5 4 3 29 29 H 1.08997 * 110.84823 * 153.86088 * 5 4 3 30 30 H 0.96995 * 120.00053 * 179.97438 * 13 12 10 31 31 H 1.09007 * 115.54932 * 31.15607 * 18 8 6 32 32 H 1.09003 * 117.49430 * 0.02562 * 19 18 8 33 33 H 1.08992 * 117.50027 * 145.02293 * 19 18 8 34 34 H 1.09007 * 117.49625 * 214.98415 * 20 18 8 35 35 H 1.08995 * 117.50260 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3048 1.3027 0.8296 5 6 2.9182 0.2789 1.9329 6 6 1.9975 -0.7057 1.1817 7 1 2.5674 -1.5801 0.8674 8 6 0.8438 -1.1356 2.0903 9 1 0.1185 -1.7068 1.5108 10 6 0.1761 0.0862 2.6666 11 1 0.7490 0.9864 2.8340 12 6 -1.1662 0.0550 2.9801 13 7 -1.8980 -0.9821 2.6359 14 14 -1.9454 1.4858 3.8939 15 1 -3.3885 1.2090 4.1088 16 1 -1.2741 1.6589 5.2071 17 1 -1.7929 2.7268 3.0927 18 6 1.3863 -2.0044 3.2268 19 6 0.9476 -3.4696 3.2674 20 6 0.3934 -2.4757 4.2913 21 1 -0.3634 0.6437 0.8011 22 1 -0.3633 0.3719 -0.9580 23 1 -0.3633 -1.0156 0.1569 24 1 2.2148 1.7040 -1.0182 25 1 1.2881 2.0596 0.4706 26 1 4.1302 0.9283 0.2243 27 1 3.5498 2.2722 1.2635 28 1 2.3782 0.7706 2.7421 29 1 3.8018 -0.2335 2.3133 30 1 -2.8422 -1.0042 2.8568 31 1 2.4008 -1.7736 3.5519 32 1 0.2728 -3.8147 2.4840 33 1 1.6733 -4.2027 3.6194 34 1 0.7549 -2.5555 5.3166 35 1 -0.6460 -2.1666 4.1821 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260588978.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:13 Heat of formation + Delta-G solvation = 36.880338 kcal Electronic energy + Delta-G solvation = -14995.039633 eV Core-core repulsion = 12801.063348 eV Total energy + Delta-G solvation = -2193.976285 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.86699 -35.93344 -32.67836 -30.98921 -29.97031 -25.98569 -24.46404 -23.15367 -21.19421 -20.66767 -19.56447 -18.30878 -16.36000 -15.05272 -14.86413 -14.42964 -13.95256 -13.50516 -12.84360 -12.54673 -12.20745 -12.08325 -11.63884 -11.02375 -10.86731 -10.56977 -10.47999 -10.40424 -10.35587 -10.17717 -9.98249 -9.92958 -9.41690 -9.14894 -8.73285 -8.46873 -8.28666 -7.15419 -6.06228 -3.99115 3.26735 3.33032 3.36393 4.38332 5.03443 5.08232 5.31357 5.46277 5.58621 5.80943 5.95067 6.19337 6.21855 6.27780 6.33036 6.45934 6.49746 6.57116 6.59825 6.72955 6.73480 6.75516 6.99700 7.05608 7.15634 7.16477 7.45725 7.53840 7.64717 7.82542 7.91604 8.19092 8.20285 8.40081 8.98943 9.53652 11.01488 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.023819 B = 0.016511 C = 0.012235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.226574 B = 1695.457832 C = 2288.009019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.528 5.528 3 C 0.046 3.954 4 C -0.130 4.130 5 C -0.136 4.136 6 C 0.082 3.918 7 H 0.054 0.946 8 C 0.044 3.956 9 H 0.071 0.929 10 C -0.495 4.495 11 H 0.057 0.943 12 C 0.069 3.931 13 N -0.884 5.884 14 Si 0.877 3.123 15 H -0.288 1.288 16 H -0.278 1.278 17 H -0.279 1.279 18 C -0.117 4.117 19 C -0.203 4.203 20 C -0.172 4.172 21 H 0.082 0.918 22 H 0.022 0.978 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.261 0.739 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.378 1.332 -1.147 5.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.251 5.251 3 C -0.082 4.082 4 C -0.168 4.168 5 C -0.174 4.174 6 C -0.026 4.026 7 H 0.072 0.928 8 C 0.026 3.974 9 H 0.089 0.911 10 C -0.533 4.533 11 H 0.075 0.925 12 C -0.132 4.132 13 N -0.522 5.522 14 Si 0.705 3.295 15 H -0.214 1.214 16 H -0.203 1.203 17 H -0.205 1.205 18 C -0.137 4.137 19 C -0.240 4.240 20 C -0.209 4.209 21 H 0.100 0.900 22 H 0.041 0.959 23 H 0.092 0.908 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.319 1.000 -1.610 5.646 hybrid contribution -0.723 1.121 1.399 1.933 sum 4.595 2.122 -0.211 5.066 Atomic orbital electron populations 1.22852 0.86896 1.04514 0.99350 1.63764 1.09627 1.12400 1.39330 1.22927 0.95265 0.91682 0.98312 1.22701 0.97481 0.98937 0.97721 1.23009 0.98663 0.97109 0.98628 1.22346 0.96047 0.95017 0.89165 0.92775 1.19154 0.92545 0.94959 0.90789 0.91097 1.20974 0.93650 0.97703 1.40991 0.92517 1.24842 0.97202 0.95585 0.95588 1.69891 1.06871 1.29699 1.45733 0.86903 0.78399 0.83277 0.80948 1.21359 1.20327 1.20465 1.22515 0.96717 0.93335 1.01089 1.22905 1.03990 0.93302 1.03810 1.22897 1.02456 1.03182 0.92384 0.90005 0.95882 0.90827 0.92280 0.93820 0.92134 0.92288 0.89432 0.93021 0.92895 0.90980 0.89784 0.91608 0.92176 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 8.20 60.07 0.49 0.74 16 2 N -0.53 -11.03 5.44 -231.55 -1.26 -12.28 16 3 C 0.05 0.86 6.73 -2.29 -0.02 0.85 16 4 C -0.13 -2.19 7.08 -24.45 -0.17 -2.36 16 5 C -0.14 -2.56 5.44 -24.77 -0.13 -2.70 16 6 C 0.08 1.73 3.16 -66.72 -0.21 1.52 16 7 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 8 C 0.04 1.02 1.36 -91.77 -0.13 0.90 16 9 H 0.07 1.84 4.89 -51.93 -0.25 1.59 16 10 C -0.50 -12.14 4.59 -34.44 -0.16 -12.30 16 11 H 0.06 1.42 5.73 -52.48 -0.30 1.12 16 12 C 0.07 1.75 3.86 -17.82 -0.07 1.68 16 13 N -0.88 -23.13 11.40 55.43 0.63 -22.50 16 14 Si 0.88 20.28 29.54 -169.99 -5.02 15.25 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.12 -2.56 5.01 -90.62 -0.45 -3.01 16 19 C -0.20 -4.16 10.18 -26.69 -0.27 -4.43 16 20 C -0.17 -3.80 9.77 -26.69 -0.26 -4.06 16 21 H 0.08 1.99 4.49 -51.93 -0.23 1.76 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 1.77 5.93 -51.93 -0.31 1.47 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.04 0.86 7.63 -51.93 -0.40 0.46 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.09 1.81 5.43 -51.93 -0.28 1.53 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.07 1.50 7.53 -51.92 -0.39 1.11 16 32 H 0.08 1.80 8.04 -51.93 -0.42 1.38 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.12 2.95 5.74 -51.93 -0.30 2.65 16 LS Contribution 261.94 15.07 3.95 3.95 Total: -1.00 -24.94 261.94 -8.48 -33.42 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.40 Total: 5.33 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -1.38 Total: -23.17 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: -0.63 Total: -34.78 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -24.94 -8.48 -33.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260588978.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.298 kcal (2) G-P(sol) polarization free energy of solvation -24.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds