Wall clock time and date at job start Mon Mar 30 2020 02:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47845 * 110.99852 * 2 1 4 4 C 1.54914 * 104.79513 * 146.36396 * 3 2 1 5 5 C 1.55392 * 101.74194 * 323.01915 * 4 3 2 6 6 C 1.47436 * 111.00312 * 120.84483 * 2 1 3 7 7 H 1.09000 * 109.89319 * 117.17349 * 6 2 1 8 8 C 1.53007 * 109.88760 * 356.14536 * 6 2 1 9 9 H 1.09003 * 109.46669 * 53.51834 * 8 6 2 10 10 C 1.50695 * 109.47481 * 293.51873 * 8 6 2 11 11 H 1.08006 * 119.99649 * 330.23257 * 10 8 6 12 12 C 1.37873 * 120.00183 * 150.22831 * 10 8 6 13 13 N 1.31519 * 120.00057 * 352.14761 * 12 10 8 14 14 Si 1.86801 * 120.00196 * 172.14477 * 12 10 8 15 15 H 1.48497 * 109.47493 * 180.02562 * 14 12 10 16 16 H 1.48500 * 109.46853 * 300.00466 * 14 12 10 17 17 H 1.48500 * 109.47003 * 60.00070 * 14 12 10 18 18 C 1.52998 * 109.47061 * 173.51159 * 8 6 2 19 19 C 1.53000 * 117.50507 * 245.47901 * 18 8 6 20 20 C 1.53004 * 117.49554 * 176.81882 * 18 8 6 21 21 H 1.08997 * 109.47336 * 308.78283 * 1 2 3 22 22 H 1.08999 * 109.47201 * 68.78607 * 1 2 3 23 23 H 1.09002 * 109.46846 * 188.78285 * 1 2 3 24 24 H 1.09006 * 110.37781 * 265.19389 * 3 2 1 25 25 H 1.09000 * 110.37632 * 27.42373 * 3 2 1 26 26 H 1.08997 * 110.98821 * 81.02632 * 4 3 2 27 27 H 1.09000 * 110.98480 * 204.80249 * 4 3 2 28 28 H 1.09003 * 110.68023 * 277.18064 * 5 4 3 29 29 H 1.08997 * 110.84823 * 153.86088 * 5 4 3 30 30 H 0.96995 * 120.00053 * 179.97438 * 13 12 10 31 31 H 1.09007 * 115.54932 * 31.15607 * 18 8 6 32 32 H 1.09003 * 117.49430 * 0.02562 * 19 18 8 33 33 H 1.08992 * 117.50027 * 145.02293 * 19 18 8 34 34 H 1.09007 * 117.49625 * 214.98415 * 20 18 8 35 35 H 1.08995 * 117.50260 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3048 1.3027 0.8296 5 6 2.9182 0.2789 1.9329 6 6 1.9975 -0.7057 1.1817 7 1 2.5674 -1.5801 0.8674 8 6 0.8438 -1.1356 2.0903 9 1 0.1185 -1.7068 1.5108 10 6 0.1761 0.0862 2.6666 11 1 0.7490 0.9864 2.8340 12 6 -1.1662 0.0550 2.9801 13 7 -1.8980 -0.9821 2.6359 14 14 -1.9454 1.4858 3.8939 15 1 -3.3885 1.2090 4.1088 16 1 -1.2741 1.6589 5.2071 17 1 -1.7929 2.7268 3.0927 18 6 1.3863 -2.0044 3.2268 19 6 0.9476 -3.4696 3.2674 20 6 0.3934 -2.4757 4.2913 21 1 -0.3634 0.6437 0.8011 22 1 -0.3633 0.3719 -0.9580 23 1 -0.3633 -1.0156 0.1569 24 1 2.2148 1.7040 -1.0182 25 1 1.2881 2.0596 0.4706 26 1 4.1302 0.9283 0.2243 27 1 3.5498 2.2722 1.2635 28 1 2.3782 0.7706 2.7421 29 1 3.8018 -0.2335 2.3133 30 1 -2.8422 -1.0042 2.8568 31 1 2.4008 -1.7736 3.5519 32 1 0.2728 -3.8147 2.4840 33 1 1.6733 -4.2027 3.6194 34 1 0.7549 -2.5555 5.3166 35 1 -0.6460 -2.1666 4.1821 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260588978.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:13 Heat of formation + Delta-G solvation = 23.079007 kcal Electronic energy + Delta-G solvation = -14995.638104 eV Core-core repulsion = 12801.063348 eV Total energy + Delta-G solvation = -2194.574755 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.52432 -37.61850 -34.54742 -32.59650 -31.68128 -27.77341 -26.13236 -24.96056 -22.89043 -22.19755 -21.21543 -20.07773 -18.20267 -16.73999 -16.51583 -16.19296 -15.60912 -15.23805 -14.50854 -14.24514 -14.04293 -13.72232 -13.31517 -12.80022 -12.70631 -12.27498 -12.18886 -12.06502 -11.94959 -11.81990 -11.70318 -11.54261 -11.07483 -10.93383 -10.50856 -10.34369 -10.11397 -8.86260 -8.01342 -5.95970 1.39580 1.44243 1.47283 2.46738 3.21817 3.43579 3.52494 4.01976 4.06167 4.26993 4.39092 4.53170 4.55833 4.73262 4.80269 4.90011 4.91887 4.99131 5.01831 5.11120 5.15268 5.23193 5.29014 5.36884 5.44492 5.52570 5.68006 5.70069 5.84398 5.92965 6.04632 6.46906 6.47535 6.54775 7.05738 7.57344 9.05543 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.023819 B = 0.016511 C = 0.012235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.226574 B = 1695.457832 C = 2288.009019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.533 5.533 3 C 0.042 3.958 4 C -0.119 4.119 5 C -0.132 4.132 6 C 0.080 3.920 7 H 0.055 0.945 8 C 0.049 3.951 9 H 0.037 0.963 10 C -0.487 4.487 11 H 0.052 0.948 12 C 0.035 3.965 13 N -0.906 5.906 14 Si 0.919 3.081 15 H -0.292 1.292 16 H -0.278 1.278 17 H -0.278 1.278 18 C -0.125 4.125 19 C -0.185 4.185 20 C -0.183 4.183 21 H 0.059 0.941 22 H 0.035 0.965 23 H 0.048 0.952 24 H 0.080 0.920 25 H 0.028 0.972 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.256 0.744 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.283 1.844 -1.112 7.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.256 5.256 3 C -0.086 4.086 4 C -0.157 4.157 5 C -0.170 4.170 6 C -0.028 4.028 7 H 0.073 0.927 8 C 0.030 3.970 9 H 0.055 0.945 10 C -0.525 4.525 11 H 0.070 0.930 12 C -0.164 4.164 13 N -0.545 5.545 14 Si 0.748 3.252 15 H -0.218 1.218 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.144 4.144 19 C -0.222 4.222 20 C -0.220 4.220 21 H 0.077 0.923 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.234 1.524 -1.575 7.559 hybrid contribution -1.304 0.950 1.350 2.104 sum 5.930 2.474 -0.225 6.429 Atomic orbital electron populations 1.22564 0.88073 1.02327 0.99069 1.63788 1.08409 1.14074 1.39366 1.23041 0.95824 0.89857 0.99879 1.22687 0.96858 0.99438 0.96722 1.22918 0.98584 0.97110 0.98430 1.22345 0.95640 0.95778 0.89077 0.92674 1.18999 0.92643 0.94184 0.91188 0.94518 1.21085 0.93513 0.97924 1.39946 0.93029 1.25268 0.97780 0.96939 0.96426 1.70002 1.06602 1.30985 1.46950 0.86223 0.77467 0.81528 0.80031 1.21841 1.20334 1.20349 1.22506 0.97228 0.94169 1.00543 1.22884 1.03674 0.93214 1.02436 1.22826 1.00992 1.04468 0.93746 0.92305 0.94614 0.93348 0.90208 0.95316 0.90229 0.90230 0.91450 0.91051 0.93502 0.89360 0.91426 0.88423 0.90231 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.24 8.20 127.69 1.05 2.29 16 2 N -0.53 -21.65 5.44 -886.50 -4.82 -26.47 16 3 C 0.04 1.46 6.73 86.78 0.58 2.04 16 4 C -0.12 -3.58 7.08 32.07 0.23 -3.35 16 5 C -0.13 -4.65 5.44 31.87 0.17 -4.48 16 6 C 0.08 3.24 3.16 45.26 0.14 3.38 16 7 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 8 C 0.05 2.25 1.36 -11.54 -0.02 2.24 16 9 H 0.04 1.96 4.89 -2.39 -0.01 1.95 16 10 C -0.49 -23.96 4.59 25.60 0.12 -23.84 16 11 H 0.05 2.58 5.73 -2.91 -0.02 2.56 16 12 C 0.03 1.78 3.86 84.65 0.33 2.11 16 13 N -0.91 -48.77 11.40 21.45 0.24 -48.52 16 14 Si 0.92 41.96 29.54 68.60 2.03 43.99 16 15 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 C -0.13 -5.32 5.01 -10.79 -0.05 -5.38 16 19 C -0.19 -7.35 10.18 30.62 0.31 -7.04 16 20 C -0.18 -7.96 9.77 30.62 0.30 -7.66 16 21 H 0.06 2.90 4.49 -2.39 -0.01 2.89 16 22 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.05 2.40 5.93 -2.39 -0.01 2.38 16 24 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 25 H 0.03 1.08 7.63 -2.39 -0.02 1.06 16 26 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 28 H 0.07 2.66 5.43 -2.39 -0.01 2.65 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 31 H 0.09 3.46 7.53 -2.38 -0.02 3.44 16 32 H 0.07 2.90 8.04 -2.39 -0.02 2.88 16 33 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.08 3.09 8.14 -2.38 -0.02 3.07 16 35 H 0.09 4.45 5.74 -2.39 -0.01 4.44 16 Total: -1.00 -53.00 261.94 1.67 -51.32 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 1.06 Total: 19.35 kcal Atomic # 6 Polarization: -42.84 SS G_CDS: 3.16 Total: -39.68 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -4.57 Total: -74.99 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -53.00 1.67 -51.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260588978.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.404 kcal (2) G-P(sol) polarization free energy of solvation -52.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds