Wall clock time and date at job start Mon Mar 30 2020 02:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.47853 * 110.99919 * 2 1 4 4 C 1.54907 * 104.79492 * 146.35910 * 3 2 1 5 5 C 1.55137 * 101.65405 * 322.93072 * 4 3 2 6 6 H 1.08999 * 110.85771 * 277.19489 * 5 4 3 7 7 C 1.53004 * 110.70451 * 154.03320 * 5 4 3 8 8 H 1.08995 * 109.47595 * 304.95077 * 7 5 4 9 9 C 1.50707 * 109.47005 * 64.94727 * 7 5 4 10 10 H 1.08006 * 119.99929 * 64.67876 * 9 7 5 11 11 C 1.37874 * 120.00201 * 244.67688 * 9 7 5 12 12 N 1.31519 * 119.99955 * 5.14688 * 11 9 7 13 13 Si 1.86797 * 120.00169 * 185.14114 * 11 9 7 14 14 H 1.48495 * 109.47241 * 90.00400 * 13 11 9 15 15 H 1.48497 * 109.47029 * 210.00290 * 13 11 9 16 16 H 1.48501 * 109.47196 * 330.00234 * 13 11 9 17 17 C 1.52996 * 109.47266 * 184.94306 * 7 5 4 18 18 C 1.52996 * 117.50278 * 174.70379 * 17 7 5 19 19 C 1.52992 * 60.03523 * 252.52396 * 18 17 7 20 20 C 1.47443 * 110.99802 * 120.83795 * 2 1 3 21 21 H 1.09000 * 109.47772 * 299.15736 * 1 2 3 22 22 H 1.09001 * 109.47449 * 59.15693 * 1 2 3 23 23 H 1.09003 * 109.46952 * 179.15706 * 1 2 3 24 24 H 1.08995 * 110.36944 * 265.19042 * 3 2 1 25 25 H 1.08999 * 110.36840 * 27.53247 * 3 2 1 26 26 H 1.09001 * 110.98921 * 204.83654 * 4 3 2 27 27 H 1.08998 * 110.98845 * 81.02234 * 4 3 2 28 28 H 0.96996 * 120.00212 * 179.97438 * 12 11 9 29 29 H 1.09005 * 115.56572 * 320.39482 * 17 7 5 30 30 H 1.09005 * 117.50282 * 145.02154 * 18 17 7 31 31 H 1.09002 * 117.49811 * 0.02763 * 18 17 7 32 32 H 1.09006 * 117.50043 * 107.47173 * 19 18 17 33 33 H 1.09001 * 117.50171 * 252.47260 * 19 18 17 34 34 H 1.09004 * 109.88822 * 117.34143 * 20 2 1 35 35 H 1.08999 * 109.89313 * 356.15129 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3046 1.3028 0.8297 5 6 2.9157 0.2823 1.9315 6 1 2.3751 0.7725 2.7412 7 6 4.1568 -0.4337 2.4681 8 1 4.6983 -0.8918 1.6405 9 6 5.0499 0.5617 3.1629 10 1 4.7084 1.0613 4.0575 11 6 6.3030 0.8345 2.6567 12 7 6.6803 0.3041 1.5139 13 14 7.4648 1.9575 3.5939 14 1 8.2901 1.1487 4.5266 15 1 8.3510 2.6645 2.6348 16 1 6.6770 2.9521 4.3655 17 6 3.7313 -1.5171 3.4611 18 6 4.8229 -2.4326 4.0186 19 6 3.8191 -2.9736 2.9986 20 6 1.9973 -0.7056 1.1819 21 1 -0.3635 0.5007 0.8974 22 1 -0.3634 0.5269 -0.8823 23 1 -0.3633 -1.0276 -0.0151 24 1 2.2147 1.7038 -1.0182 25 1 1.2888 2.0592 0.4723 26 1 3.5493 2.2721 1.2641 27 1 4.1301 0.9283 0.2244 28 1 7.5617 0.4963 1.1575 29 1 2.9109 -1.2488 4.1270 30 1 4.7209 -2.7668 5.0512 31 1 5.8444 -2.2629 3.6783 32 1 4.1801 -3.1594 1.9869 33 1 3.0568 -3.6639 3.3599 34 1 2.5697 -1.5784 0.8676 35 1 1.1754 -1.0119 1.8291 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260599099.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:39 Heat of formation + Delta-G solvation = 1.566841 kcal Electronic energy + Delta-G solvation = -14437.726916 eV Core-core repulsion = 12242.219323 eV Total energy + Delta-G solvation = -2195.507593 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.10533 -37.94744 -34.87731 -33.12479 -30.52046 -28.66007 -26.15010 -24.88648 -22.97990 -21.80936 -21.33178 -20.46097 -18.49627 -16.69175 -16.56915 -16.46092 -15.56033 -15.04544 -14.80650 -14.31761 -14.10508 -13.61622 -13.32412 -12.94020 -12.85215 -12.52280 -12.40706 -12.21638 -12.13692 -12.01419 -11.75477 -11.52629 -11.35439 -10.78226 -10.72622 -10.41748 -10.19153 -9.15686 -8.03350 -6.08779 1.39799 1.42610 1.50168 2.46006 3.19127 3.25032 3.36250 3.94615 4.07744 4.19365 4.33160 4.44622 4.46806 4.52011 4.60613 4.67023 4.79526 4.84939 4.91444 4.98500 5.01421 5.09143 5.20487 5.27324 5.42172 5.49693 5.51396 5.57858 5.76607 5.93575 6.02014 6.12722 6.30440 6.49217 7.07083 7.54680 9.03897 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.028212 B = 0.011787 C = 0.009056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.233827 B = 2374.836671 C = 3091.060412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.553 5.553 3 C 0.046 3.954 4 C -0.100 4.100 5 C -0.086 4.086 6 H 0.050 0.950 7 C 0.071 3.929 8 H 0.035 0.965 9 C -0.503 4.503 10 H 0.041 0.959 11 C 0.024 3.976 12 N -0.920 5.920 13 Si 0.936 3.064 14 H -0.280 1.280 15 H -0.288 1.288 16 H -0.270 1.270 17 C -0.133 4.133 18 C -0.179 4.179 19 C -0.176 4.176 20 C 0.058 3.942 21 H 0.027 0.973 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.257 0.743 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.059 0.941 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.624 -1.260 -0.035 9.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.277 5.277 3 C -0.081 4.081 4 C -0.138 4.138 5 C -0.106 4.106 6 H 0.068 0.932 7 C 0.052 3.948 8 H 0.053 0.947 9 C -0.542 4.542 10 H 0.060 0.940 11 C -0.175 4.175 12 N -0.560 5.560 13 Si 0.763 3.237 14 H -0.206 1.206 15 H -0.214 1.214 16 H -0.195 1.195 17 C -0.151 4.151 18 C -0.216 4.216 19 C -0.213 4.213 20 C -0.069 4.069 21 H 0.045 0.955 22 H 0.095 0.905 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.077 0.923 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.334 -1.520 -0.618 9.477 hybrid contribution 0.893 1.052 1.168 1.808 sum -8.441 -0.468 0.550 8.472 Atomic orbital electron populations 1.22566 0.86681 1.02471 1.00876 1.63549 1.08955 1.14540 1.40684 1.23052 0.95527 0.89419 1.00108 1.22346 0.96248 0.98690 0.96521 1.22339 0.96653 0.95680 0.95896 0.93154 1.18446 0.91312 0.91660 0.93383 0.94700 1.21195 0.99916 1.23198 1.09853 0.94028 1.25496 0.99438 0.97197 0.95332 1.70030 1.20115 1.46349 1.19478 0.85904 0.79531 0.79555 0.78737 1.20603 1.21418 1.19487 1.22494 0.99327 0.91329 1.01983 1.22638 0.95133 1.05612 0.98181 1.22964 1.02413 0.97436 0.98499 1.22785 0.97194 0.97121 0.89849 0.95485 0.90486 0.90777 0.90420 0.92983 0.92862 0.93421 0.93383 0.89289 0.88475 0.92065 0.90833 0.87511 0.92254 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.12 127.69 1.16 1.73 16 2 N -0.55 -18.58 5.44 -911.69 -4.96 -23.54 16 3 C 0.05 1.57 6.73 86.77 0.58 2.16 16 4 C -0.10 -4.24 6.03 31.98 0.19 -4.04 16 5 C -0.09 -3.61 2.48 -9.61 -0.02 -3.63 16 6 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 7 C 0.07 3.41 1.58 -11.54 -0.02 3.39 16 8 H 0.03 1.94 6.74 -2.39 -0.02 1.92 16 9 C -0.50 -26.79 7.59 25.60 0.19 -26.60 16 10 H 0.04 2.23 7.82 -2.91 -0.02 2.21 16 11 C 0.02 1.30 5.45 84.65 0.46 1.76 16 12 N -0.92 -53.00 12.63 21.45 0.27 -52.73 16 13 Si 0.94 43.73 29.54 68.60 2.03 45.76 16 14 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 15 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 17 C -0.13 -5.48 4.45 -10.77 -0.05 -5.52 16 18 C -0.18 -7.15 10.01 30.59 0.31 -6.85 16 19 C -0.18 -6.36 9.90 30.62 0.30 -6.06 16 20 C 0.06 2.11 5.89 86.65 0.51 2.62 16 21 H 0.03 0.66 8.10 -2.39 -0.02 0.64 16 22 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.05 1.58 7.78 -2.39 -0.02 1.56 16 26 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.05 2.35 8.04 -2.39 -0.02 2.33 16 28 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.09 3.42 8.14 -2.38 -0.02 3.40 16 30 H 0.10 3.35 8.14 -2.38 -0.02 3.33 16 31 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.07 2.84 8.08 -2.38 -0.02 2.82 16 33 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.06 2.34 7.53 -2.38 -0.02 2.33 16 35 H 0.06 1.85 7.58 -2.39 -0.02 1.83 16 Total: -1.00 -57.98 281.43 1.98 -56.00 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 1.02 Total: 15.56 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 3.63 Total: -41.05 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -4.69 Total: -76.27 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -57.98 1.98 -56.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260599099.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.567 kcal (2) G-P(sol) polarization free energy of solvation -57.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds