Wall clock time and date at job start Mon Mar 30 2020 02:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47955 * 110.99979 * 2 1 4 4 C 1.53938 * 86.30171 * 222.47321 * 3 2 1 5 5 C 1.48187 * 111.07350 * 260.70911 * 2 1 3 6 6 H 1.09000 * 113.65826 * 23.13885 * 5 2 1 7 7 C 1.53006 * 113.82510 * 251.81134 * 5 2 1 8 8 H 1.08997 * 109.47076 * 328.59705 * 7 5 2 9 9 C 1.52996 * 109.47030 * 208.59694 * 7 5 2 10 10 C 1.50703 * 109.47124 * 175.66628 * 9 7 5 11 11 H 1.08000 * 119.99937 * 357.49589 * 10 9 7 12 12 C 1.37871 * 120.00004 * 177.49919 * 10 9 7 13 13 N 1.31518 * 120.00263 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00205 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47367 * 90.00504 * 14 12 10 16 16 H 1.48503 * 109.47515 * 210.00466 * 14 12 10 17 17 H 1.48502 * 109.47276 * 330.00292 * 14 12 10 18 18 C 1.53001 * 109.47167 * 88.59679 * 7 5 2 19 19 C 1.52996 * 117.49806 * 2.25451 * 18 7 5 20 20 C 1.52998 * 60.00306 * 252.51034 * 19 18 7 21 21 H 1.09004 * 109.46900 * 67.52923 * 1 2 3 22 22 H 1.08995 * 109.47311 * 187.53385 * 1 2 3 23 23 H 1.09004 * 109.46825 * 307.52929 * 1 2 3 24 24 H 1.09002 * 113.75844 * 108.10734 * 3 2 1 25 25 H 1.08992 * 113.76358 * 336.84088 * 3 2 1 26 26 H 1.08997 * 113.73986 * 138.02666 * 4 3 2 27 27 H 1.09001 * 113.73421 * 269.31115 * 4 3 2 28 28 H 1.09003 * 109.47231 * 295.66714 * 9 7 5 29 29 H 1.09001 * 109.47170 * 55.66753 * 9 7 5 30 30 H 0.96993 * 120.00496 * 179.97438 * 13 12 10 31 31 H 1.08997 * 115.55083 * 147.96475 * 18 7 5 32 32 H 1.09004 * 117.49927 * 359.97438 * 19 18 7 33 33 H 1.09007 * 117.49944 * 145.02070 * 19 18 7 34 34 H 1.08998 * 117.49911 * 252.51509 * 20 19 18 35 35 H 1.08993 * 117.50025 * 107.48999 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0215 0.8825 -1.0373 5 6 2.0019 -0.2232 -1.3646 6 1 1.3025 0.0448 -2.1565 7 6 2.6318 -1.6033 -1.5641 8 1 3.0707 -1.9414 -0.6254 9 6 3.7214 -1.5166 -2.6346 10 6 4.4138 -2.8497 -2.7557 11 1 4.1349 -3.6642 -2.1037 12 6 5.4033 -3.0294 -3.6988 13 7 6.0073 -4.1928 -3.8048 14 14 5.8853 -1.6207 -4.8269 15 1 6.9743 -0.8320 -4.1965 16 1 6.3566 -2.1654 -6.1255 17 1 4.7082 -0.7447 -5.0556 18 6 1.5559 -2.5953 -2.0105 19 6 0.1400 -2.0549 -2.2201 20 6 0.4507 -2.9369 -1.0091 21 1 -0.3633 0.3928 -0.9497 22 1 -0.3634 -1.0187 0.1347 23 1 -0.3633 0.6261 0.8150 24 1 2.4461 1.6801 0.9482 25 1 1.3004 2.1200 -0.3923 26 1 3.1904 1.5802 -1.8575 27 1 3.9466 0.5099 -0.5975 28 1 3.2705 -1.2531 -3.5914 29 1 4.4477 -0.7542 -2.3530 30 1 6.7032 -4.3194 -4.4685 31 1 1.8954 -3.3893 -2.6755 32 1 -0.0252 -0.9927 -2.0395 33 1 -0.4523 -2.4933 -3.0233 34 1 0.0629 -3.9555 -1.0157 35 1 0.4900 -2.4549 -0.0323 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260639541.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:48 Heat of formation + Delta-G solvation = 58.968233 kcal Electronic energy + Delta-G solvation = -14443.339957 eV Core-core repulsion = 12250.321475 eV Total energy + Delta-G solvation = -2193.018482 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.15729 -36.60309 -33.36749 -31.51224 -29.68879 -26.78950 -24.14543 -23.70105 -22.05306 -21.26392 -19.82808 -18.28011 -16.75903 -15.74361 -15.32269 -14.70593 -14.16069 -14.06477 -13.90714 -13.15735 -12.61819 -12.25480 -11.86993 -11.64091 -11.33578 -11.13161 -10.99525 -10.83669 -10.47869 -10.44767 -10.03519 -9.77366 -9.65066 -9.33753 -9.20192 -8.95792 -8.49380 -8.43140 -5.98700 -3.95293 3.33460 3.41081 3.44490 4.15309 4.44946 4.49715 4.85122 5.04588 5.23676 5.34307 5.37596 5.44392 5.52285 5.61521 5.64211 5.65840 5.82528 5.94442 6.00388 6.07429 6.14419 6.35063 6.39803 6.46640 6.54458 6.63841 6.77318 6.97351 7.15877 7.30053 7.34950 7.58844 7.85533 8.61334 9.08184 9.64258 11.14778 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.034960 B = 0.010260 C = 0.008653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.714242 B = 2728.435502 C = 3235.150593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.478 5.478 3 C -0.005 4.005 4 C -0.141 4.141 5 C 0.035 3.965 6 H 0.077 0.923 7 C -0.025 4.025 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.511 4.511 11 H 0.074 0.926 12 C 0.065 3.935 13 N -0.905 5.905 14 Si 0.876 3.124 15 H -0.278 1.278 16 H -0.290 1.290 17 H -0.265 1.265 18 C -0.116 4.116 19 C -0.208 4.208 20 C -0.194 4.194 21 H 0.032 0.968 22 H 0.081 0.919 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.016 0.984 29 H 0.014 0.986 30 H 0.261 0.739 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.167 9.668 4.796 14.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 N -0.200 5.200 3 C -0.134 4.134 4 C -0.179 4.179 5 C -0.073 4.073 6 H 0.095 0.905 7 C -0.044 4.044 8 H 0.095 0.905 9 C -0.042 4.042 10 C -0.549 4.549 11 H 0.092 0.908 12 C -0.135 4.135 13 N -0.545 5.545 14 Si 0.704 3.296 15 H -0.204 1.204 16 H -0.216 1.216 17 H -0.190 1.190 18 C -0.134 4.134 19 C -0.244 4.244 20 C -0.231 4.231 21 H 0.051 0.949 22 H 0.099 0.901 23 H 0.076 0.924 24 H 0.102 0.898 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.113 0.887 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.071 0.929 31 H 0.134 0.866 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.898 9.120 5.236 14.442 hybrid contribution -0.137 1.166 -1.329 1.773 sum -10.034 10.286 3.907 14.891 Atomic orbital electron populations 1.23128 0.90834 1.03111 0.99834 1.68614 1.08041 1.17425 1.25923 1.23852 0.97609 0.91662 1.00247 1.23387 0.98727 0.97602 0.98209 1.23916 0.95944 0.97615 0.89854 0.90517 1.20503 0.94214 0.89367 1.00268 0.90464 1.19568 0.93186 0.97767 0.93713 1.21133 1.18287 0.96898 1.18581 0.90777 1.25013 0.96025 0.95358 0.97129 1.69914 1.25750 1.23186 1.35631 0.86839 0.79153 0.83172 0.80479 1.20394 1.21582 1.18995 1.22478 0.88277 1.01543 1.01114 1.23290 1.01211 0.99562 1.00378 1.23085 1.05576 0.99540 0.94881 0.94940 0.90074 0.92388 0.89847 0.92121 0.91507 0.88669 0.96608 0.96748 0.92879 0.86624 0.88849 0.90035 0.90015 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.26 7.97 60.07 0.48 0.22 16 2 N -0.48 -7.18 6.14 -237.98 -1.46 -8.64 16 3 C 0.00 -0.06 7.95 -2.77 -0.02 -0.08 16 4 C -0.14 -2.15 6.73 -25.79 -0.17 -2.32 16 5 C 0.04 0.58 2.11 -66.53 -0.14 0.44 16 6 H 0.08 1.25 5.80 -51.93 -0.30 0.95 16 7 C -0.02 -0.49 2.13 -90.62 -0.19 -0.69 16 8 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 9 C 0.00 -0.11 3.35 -27.88 -0.09 -0.20 16 10 C -0.51 -14.32 8.66 -34.44 -0.30 -14.62 16 11 H 0.07 2.25 7.82 -52.49 -0.41 1.84 16 12 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 13 N -0.91 -27.94 13.96 55.43 0.77 -27.17 16 14 Si 0.88 21.70 27.52 -169.99 -4.68 17.02 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.27 -6.30 6.47 56.52 0.37 -5.94 16 18 C -0.12 -2.22 5.44 -90.62 -0.49 -2.71 16 19 C -0.21 -3.29 8.97 -26.73 -0.24 -3.53 16 20 C -0.19 -3.15 9.33 -26.73 -0.25 -3.40 16 21 H 0.03 0.40 6.35 -51.93 -0.33 0.07 16 22 H 0.08 1.06 5.02 -51.93 -0.26 0.80 16 23 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.06 0.70 7.92 -51.93 -0.41 0.29 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.09 1.55 7.80 -51.93 -0.40 1.14 16 28 H 0.02 0.37 7.02 -51.93 -0.36 0.01 16 29 H 0.01 0.33 6.51 -51.93 -0.34 -0.01 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.12 2.52 7.26 -51.93 -0.38 2.15 16 32 H 0.09 1.39 3.20 -51.93 -0.17 1.22 16 33 H 0.08 1.22 8.14 -51.92 -0.42 0.79 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.10 1.56 5.68 -51.93 -0.29 1.27 16 LS Contribution 263.92 15.07 3.98 3.98 Total: -1.00 -29.51 263.92 -8.27 -37.78 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.36 Total: 2.11 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -1.52 Total: -25.09 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.69 Total: -35.81 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.68 Total: 17.02 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.51 -8.27 -37.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260639541.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.749 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds