Wall clock time and date at job start Mon Mar 30 2020 02:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47485 * 111.00007 * 2 1 4 4 C 1.53701 * 87.92384 * 221.29852 * 3 2 1 5 5 C 1.47477 * 111.00335 * 264.02562 * 2 1 3 6 6 H 1.09002 * 113.47651 * 23.93552 * 5 2 1 7 7 C 1.53000 * 113.47552 * 253.53104 * 5 2 1 8 8 H 1.09000 * 109.47021 * 205.43674 * 7 5 2 9 9 C 1.53000 * 109.46933 * 325.43409 * 7 5 2 10 10 C 1.50702 * 109.47093 * 184.99786 * 9 7 5 11 11 H 1.08006 * 119.99809 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00283 * 179.97438 * 10 9 7 13 13 N 1.31513 * 119.99705 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00117 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47377 * 60.00068 * 14 12 10 16 16 H 1.48499 * 109.47122 * 180.02562 * 14 12 10 17 17 H 1.48510 * 109.47033 * 300.00152 * 14 12 10 18 18 C 1.52999 * 109.47194 * 85.43686 * 7 5 2 19 19 C 1.52995 * 117.50128 * 128.62104 * 18 7 5 20 20 C 1.52994 * 60.00131 * 252.51301 * 19 18 7 21 21 H 1.08997 * 109.46957 * 155.97436 * 1 2 3 22 22 H 1.08995 * 109.47256 * 275.97548 * 1 2 3 23 23 H 1.08998 * 109.46634 * 35.97674 * 1 2 3 24 24 H 1.08996 * 113.47464 * 336.05462 * 3 2 1 25 25 H 1.08998 * 113.47726 * 106.46822 * 3 2 1 26 26 H 1.09003 * 114.16637 * 272.40267 * 4 3 2 27 27 H 1.09003 * 114.22868 * 139.64075 * 4 3 2 28 28 H 1.08993 * 109.47529 * 305.00171 * 9 7 5 29 29 H 1.09006 * 109.46872 * 65.00549 * 9 7 5 30 30 H 0.97002 * 119.99838 * 180.02562 * 13 12 10 31 31 H 1.09003 * 115.54990 * 274.33141 * 18 7 5 32 32 H 1.09006 * 117.49479 * 0.02562 * 19 18 7 33 33 H 1.09002 * 117.50229 * 145.01493 * 19 18 7 34 34 H 1.09008 * 117.49579 * 252.51193 * 20 19 18 35 35 H 1.08995 * 117.50389 * 107.49289 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3769 0.0000 4 6 3.0549 0.9114 -1.0137 5 6 1.9976 -0.1433 -1.3693 6 1 1.3001 0.1838 -2.1405 7 6 2.5875 -1.5262 -1.6533 8 1 3.3299 -1.4483 -2.4475 9 6 3.2515 -2.0675 -0.3856 10 6 3.9380 -3.3726 -0.6963 11 1 3.9045 -3.7754 -1.6979 12 6 4.6099 -4.0518 0.2978 13 7 4.6512 -3.5611 1.5172 14 14 5.4615 -5.6691 -0.0875 15 1 6.4938 -5.4486 -1.1319 16 1 6.1059 -6.1946 1.1429 17 1 4.4613 -6.6504 -0.5796 18 6 1.4712 -2.4769 -2.0902 19 6 1.6811 -3.2657 -3.3842 20 6 0.6811 -2.1083 -3.3475 21 1 -0.3633 -0.9386 -0.4184 22 1 -0.3633 0.1070 1.0220 23 1 -0.3632 0.8317 -0.6037 24 1 1.3001 2.1097 -0.4058 25 1 2.4177 1.6807 0.9587 26 1 3.9581 0.5027 -0.5606 27 1 3.2565 1.6274 -1.8105 28 1 3.9858 -1.3476 -0.0243 29 1 2.4935 -2.2292 0.3808 30 1 5.1241 -4.0388 2.2165 31 1 0.9301 -2.9695 -1.2822 32 1 2.6148 -3.1076 -3.9241 33 1 1.2784 -4.2777 -3.4277 34 1 -0.3796 -2.3589 -3.3669 35 1 0.9566 -1.1886 -3.8635 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260639543.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:51 Heat of formation + Delta-G solvation = 32.597964 kcal Electronic energy + Delta-G solvation = -14396.337634 eV Core-core repulsion = 12202.175651 eV Total energy + Delta-G solvation = -2194.161982 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.26208 -38.14343 -35.11514 -32.67597 -31.11671 -28.23934 -25.06128 -25.00030 -23.50270 -23.06129 -21.15988 -19.67244 -18.46849 -16.91366 -16.44879 -16.21792 -15.92035 -15.63395 -14.92144 -14.31388 -14.06070 -13.57921 -13.27963 -13.06394 -12.81759 -12.48892 -12.42514 -12.27574 -12.13052 -11.91234 -11.67339 -11.53583 -11.18329 -11.14199 -10.64987 -10.38379 -10.32318 -9.48097 -8.06631 -6.14113 1.39831 1.42430 1.49731 2.46787 3.10786 3.23534 3.26770 3.67775 3.90963 4.11096 4.19833 4.27321 4.30526 4.49135 4.51792 4.60234 4.73314 4.81029 4.84592 4.89299 4.99804 5.04131 5.07683 5.14031 5.30757 5.36945 5.47544 5.52753 5.65363 5.74745 6.00312 6.13397 6.41475 6.45575 7.05921 7.52385 9.04576 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.028945 B = 0.010800 C = 0.008806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.133164 B = 2591.987468 C = 3178.852115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 N -0.496 5.496 3 C 0.002 3.998 4 C -0.146 4.146 5 C 0.041 3.959 6 H 0.091 0.909 7 C -0.031 4.031 8 H 0.054 0.946 9 C 0.063 3.937 10 C -0.524 4.524 11 H 0.057 0.943 12 C -0.002 4.002 13 N -0.935 5.935 14 Si 0.951 3.049 15 H -0.268 1.268 16 H -0.287 1.287 17 H -0.271 1.271 18 C -0.132 4.132 19 C -0.183 4.183 20 C -0.164 4.164 21 H 0.058 0.942 22 H 0.064 0.936 23 H 0.052 0.948 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.096 0.904 28 H -0.016 1.016 29 H -0.007 1.007 30 H 0.257 0.743 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 8.013 -8.320 13.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 N -0.218 5.218 3 C -0.126 4.126 4 C -0.183 4.183 5 C -0.068 4.068 6 H 0.108 0.892 7 C -0.050 4.050 8 H 0.072 0.928 9 C 0.026 3.974 10 C -0.562 4.562 11 H 0.076 0.924 12 C -0.199 4.199 13 N -0.576 5.576 14 Si 0.777 3.223 15 H -0.193 1.193 16 H -0.213 1.213 17 H -0.196 1.196 18 C -0.151 4.151 19 C -0.220 4.220 20 C -0.201 4.201 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.108 0.892 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.003 0.997 29 H 0.011 0.989 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.620 7.491 -7.613 13.120 hybrid contribution 0.290 -0.635 -0.114 0.707 sum -7.330 6.856 -7.728 12.667 Atomic orbital electron populations 1.22830 0.89318 1.01379 1.01882 1.69024 1.09801 1.19292 1.23713 1.23819 0.97366 0.91413 1.00025 1.23237 0.97290 0.98198 0.99584 1.23477 0.96536 0.95429 0.91328 0.89151 1.20563 0.94380 0.92218 0.97873 0.92755 1.18660 0.93347 0.93055 0.92349 1.21783 1.31652 1.07299 0.95489 0.92445 1.25868 0.97757 1.01235 0.95043 1.70133 1.44550 1.40667 1.02278 0.85716 0.78958 0.80250 0.77400 1.19311 1.21305 1.19595 1.21967 1.00292 1.02030 0.90774 1.22916 1.01025 0.96576 1.01488 1.23013 0.97159 0.99193 1.00728 0.92283 0.91692 0.92998 0.89157 0.90816 0.91414 0.88546 0.99725 0.98860 0.93395 0.91119 0.89467 0.89366 0.88031 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.15 9.69 127.69 1.24 1.09 16 2 N -0.50 -17.66 5.26 -927.60 -4.88 -22.53 16 3 C 0.00 0.07 7.71 83.64 0.64 0.71 16 4 C -0.15 -4.56 7.83 31.00 0.24 -4.32 16 5 C 0.04 1.38 2.79 42.19 0.12 1.50 16 6 H 0.09 2.54 6.94 -2.39 -0.02 2.52 16 7 C -0.03 -1.30 2.08 -10.79 -0.02 -1.32 16 8 H 0.05 2.26 7.90 -2.39 -0.02 2.24 16 9 C 0.06 3.40 3.75 29.85 0.11 3.51 16 10 C -0.52 -30.37 8.61 25.60 0.22 -30.15 16 11 H 0.06 3.20 7.34 -2.91 -0.02 3.18 16 12 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 13 N -0.93 -59.27 13.29 21.45 0.28 -58.98 16 14 Si 0.95 46.00 29.54 68.60 2.03 48.03 16 15 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 17 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 18 C -0.13 -4.97 4.51 -10.80 -0.05 -5.02 16 19 C -0.18 -6.06 9.90 30.59 0.30 -5.76 16 20 C -0.16 -4.55 9.59 30.59 0.29 -4.26 16 21 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 23 H 0.05 1.19 7.52 -2.39 -0.02 1.17 16 24 H 0.09 2.01 7.54 -2.39 -0.02 1.99 16 25 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.07 2.60 6.59 -2.39 -0.02 2.59 16 27 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 28 H -0.02 -0.92 6.50 -2.39 -0.02 -0.94 16 29 H -0.01 -0.43 7.65 -2.38 -0.02 -0.45 16 30 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 31 H 0.07 3.02 8.11 -2.39 -0.02 3.00 16 32 H 0.09 2.89 8.05 -2.38 -0.02 2.88 16 33 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.10 2.50 7.72 -2.39 -0.02 2.48 16 Total: -1.00 -67.19 280.34 2.03 -65.16 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 1.03 Total: 12.02 kcal Atomic # 6 Polarization: -47.26 SS G_CDS: 3.56 Total: -43.69 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -4.59 Total: -81.51 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -67.19 2.03 -65.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260639543.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.761 kcal (2) G-P(sol) polarization free energy of solvation -67.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds