Wall clock time and date at job start Mon Mar 30 2020 02:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47954 * 111.00069 * 2 1 4 4 C 1.53928 * 86.18176 * 137.58375 * 3 2 1 5 5 C 1.47960 * 111.00002 * 99.36003 * 2 1 3 6 6 H 1.09000 * 113.85719 * 336.74597 * 5 2 1 7 7 C 1.53005 * 113.75936 * 108.09637 * 5 2 1 8 8 H 1.08997 * 109.47119 * 277.85897 * 7 5 2 9 9 C 1.53000 * 109.46919 * 37.85860 * 7 5 2 10 10 C 1.50705 * 109.46949 * 184.99575 * 9 7 5 11 11 H 1.08000 * 120.00110 * 0.02562 * 10 9 7 12 12 C 1.37880 * 119.99618 * 180.27378 * 10 9 7 13 13 N 1.31521 * 119.99473 * 179.72835 * 12 10 9 14 14 Si 1.86794 * 120.00296 * 359.72614 * 12 10 9 15 15 H 1.48507 * 109.47099 * 89.99887 * 14 12 10 16 16 H 1.48500 * 109.47344 * 210.00064 * 14 12 10 17 17 H 1.48499 * 109.47149 * 329.99914 * 14 12 10 18 18 C 1.52999 * 109.47088 * 157.85697 * 7 5 2 19 19 C 1.52994 * 117.49924 * 133.94411 * 18 7 5 20 20 C 1.53004 * 60.00256 * 252.51191 * 19 18 7 21 21 H 1.08996 * 109.46928 * 324.99899 * 1 2 3 22 22 H 1.09004 * 109.47041 * 84.99509 * 1 2 3 23 23 H 1.08999 * 109.46782 * 204.99191 * 1 2 3 24 24 H 1.08997 * 113.76011 * 23.26042 * 3 2 1 25 25 H 1.09002 * 113.86139 * 251.91204 * 3 2 1 26 26 H 1.09000 * 113.73732 * 221.92088 * 4 3 2 27 27 H 1.09001 * 113.73678 * 90.63934 * 4 3 2 28 28 H 1.09001 * 109.47266 * 64.99797 * 9 7 5 29 29 H 1.08997 * 109.47132 * 304.99898 * 9 7 5 30 30 H 0.97000 * 119.99286 * 179.97438 * 13 12 10 31 31 H 1.09004 * 115.54725 * 279.65497 * 18 7 5 32 32 H 1.08994 * 117.49892 * 359.97438 * 19 18 7 33 33 H 1.09002 * 117.49957 * 145.02361 * 19 18 7 34 34 H 1.09000 * 117.49540 * 252.51624 * 20 19 18 35 35 H 1.08992 * 117.50024 * 107.49086 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 1.0360 5 6 1.9993 -0.2247 1.3629 6 1 1.3022 0.0434 2.1569 7 6 2.6263 -1.6063 1.5605 8 1 1.8421 -2.3353 1.7647 9 6 3.3804 -2.0102 0.2920 10 6 3.8938 -3.4193 0.4400 11 1 3.7012 -3.9717 1.3479 12 6 4.6139 -4.0015 -0.5816 13 7 5.0666 -5.2293 -0.4502 14 14 4.9466 -3.0464 -2.1520 15 1 6.2211 -2.2966 -2.0149 16 1 5.0481 -3.9907 -3.2936 17 1 3.8349 -2.0925 -2.3961 18 6 3.5999 -1.5606 2.7398 19 6 3.5215 -2.6936 3.7649 20 6 3.0151 -1.2965 4.1288 21 1 -0.3633 0.8418 0.5894 22 1 -0.3633 0.0897 -1.0238 23 1 -0.3633 -0.9314 0.4342 24 1 1.3010 2.1197 0.3940 25 1 2.4462 1.6820 -0.9476 26 1 3.1922 1.5757 1.8568 27 1 3.9452 0.5051 0.5952 28 1 4.2196 -1.3321 0.1367 29 1 2.7071 -1.9567 -0.5635 30 1 5.5729 -5.6390 -1.1691 31 1 4.5842 -1.1465 2.5211 32 1 2.7761 -3.4714 3.5994 33 1 4.4544 -3.0254 4.2208 34 1 3.6149 -0.7090 4.8240 35 1 1.9369 -1.1553 4.2024 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260639545.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:54 Heat of formation + Delta-G solvation = 52.694535 kcal Electronic energy + Delta-G solvation = -14403.243203 eV Core-core repulsion = 12209.952674 eV Total energy + Delta-G solvation = -2193.290530 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.87612 -36.78921 -32.96450 -31.15269 -29.87066 -26.88947 -23.88924 -23.43336 -21.71716 -21.31494 -20.21346 -17.89979 -16.74437 -15.58881 -15.07005 -14.74758 -14.43599 -13.90551 -13.61237 -12.89903 -12.56676 -12.40796 -11.82696 -11.45115 -11.34081 -11.02862 -10.99319 -10.80737 -10.45643 -10.36900 -10.18739 -9.64530 -9.48392 -9.47875 -9.08803 -8.77369 -8.38230 -8.25379 -5.87609 -3.82070 3.42565 3.50117 3.60192 4.18442 4.53649 4.62034 4.90539 5.09852 5.28863 5.46492 5.51084 5.53564 5.56953 5.60407 5.64263 5.73298 5.92065 6.04534 6.07527 6.10122 6.15895 6.23920 6.49266 6.52239 6.56323 6.71347 6.77877 7.00242 7.08892 7.45662 7.60613 7.77026 8.00942 8.74266 9.21163 9.77294 11.26140 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.023485 B = 0.013154 C = 0.009600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.980232 B = 2128.148349 C = 2915.845273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.469 5.469 3 C -0.005 4.005 4 C -0.141 4.141 5 C 0.040 3.960 6 H 0.065 0.935 7 C -0.026 4.026 8 H 0.059 0.941 9 C 0.003 3.997 10 C -0.508 4.508 11 H 0.073 0.927 12 C 0.063 3.937 13 N -0.911 5.911 14 Si 0.872 3.128 15 H -0.281 1.281 16 H -0.293 1.293 17 H -0.259 1.259 18 C -0.107 4.107 19 C -0.165 4.165 20 C -0.204 4.204 21 H 0.026 0.974 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.007 0.993 29 H 0.035 0.965 30 H 0.259 0.741 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.228 12.355 4.540 14.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 N -0.191 5.191 3 C -0.133 4.133 4 C -0.178 4.178 5 C -0.068 4.068 6 H 0.083 0.917 7 C -0.045 4.045 8 H 0.078 0.922 9 C -0.034 4.034 10 C -0.546 4.546 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.551 5.551 14 Si 0.700 3.300 15 H -0.207 1.207 16 H -0.219 1.219 17 H -0.183 1.183 18 C -0.126 4.126 19 C -0.202 4.202 20 C -0.241 4.241 21 H 0.045 0.955 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.082 0.918 27 H 0.115 0.885 28 H 0.025 0.975 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.003 11.770 3.899 13.776 hybrid contribution -0.126 0.862 -0.229 0.901 sum -6.129 12.632 3.670 14.512 Atomic orbital electron populations 1.22838 0.90682 1.00712 1.01545 1.68591 1.07935 1.17181 1.25422 1.23905 0.97688 0.91467 1.00289 1.23408 0.99050 0.97310 0.98058 1.23548 0.95742 0.97547 0.90012 0.91665 1.20446 0.95883 0.92332 0.95823 0.92213 1.19515 0.94879 0.95999 0.93012 1.21287 1.32666 0.97511 1.03104 0.90869 1.24992 0.95659 0.94708 0.98263 1.69932 1.38222 1.13738 1.33242 0.86876 0.79184 0.80271 0.83689 1.20730 1.21901 1.18338 1.22037 0.99880 1.01938 0.88725 1.22796 1.02407 0.91343 1.03622 1.22955 1.00100 1.00707 1.00321 0.95507 0.91664 0.91504 0.92132 0.89899 0.91820 0.88450 0.97476 0.94654 0.93147 0.88437 0.89138 0.89566 0.89973 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 9.71 60.07 0.58 0.46 16 2 N -0.47 -7.94 4.98 -238.99 -1.19 -9.13 16 3 C 0.00 -0.06 7.97 -2.77 -0.02 -0.09 16 4 C -0.14 -2.11 7.16 -25.80 -0.18 -2.30 16 5 C 0.04 0.67 3.08 -66.65 -0.21 0.46 16 6 H 0.07 0.98 7.93 -51.93 -0.41 0.57 16 7 C -0.03 -0.51 2.20 -90.62 -0.20 -0.71 16 8 H 0.06 1.26 7.94 -51.93 -0.41 0.84 16 9 C 0.00 0.08 2.92 -27.88 -0.08 0.00 16 10 C -0.51 -14.47 9.16 -34.44 -0.32 -14.79 16 11 H 0.07 2.22 7.23 -52.49 -0.38 1.84 16 12 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 13 N -0.91 -28.70 13.96 55.43 0.77 -27.92 16 14 Si 0.87 22.50 27.46 -169.99 -4.67 17.83 16 15 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 17 H -0.26 -6.54 6.55 56.52 0.37 -6.17 16 18 C -0.11 -1.97 4.01 -90.62 -0.36 -2.33 16 19 C -0.16 -2.94 9.52 -26.73 -0.25 -3.19 16 20 C -0.20 -3.09 10.02 -26.73 -0.27 -3.36 16 21 H 0.03 0.33 7.51 -51.93 -0.39 -0.06 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.06 0.73 7.55 -51.93 -0.39 0.33 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.10 1.64 6.45 -51.93 -0.33 1.31 16 28 H 0.01 0.17 6.04 -51.93 -0.31 -0.14 16 29 H 0.04 0.90 6.30 -51.93 -0.33 0.57 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 31 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 32 H 0.09 1.68 8.08 -51.93 -0.42 1.26 16 33 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 276.85 15.07 4.17 4.17 Total: -1.00 -30.95 276.85 -8.25 -39.20 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.93 Total: -0.09 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -1.41 Total: -24.06 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.42 Total: -37.05 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.67 Total: 17.83 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.95 -8.25 -39.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260639545.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.897 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds