Wall clock time and date at job start Mon Mar 30 2020 02:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47954 * 111.00069 * 2 1 4 4 C 1.53928 * 86.18176 * 137.58375 * 3 2 1 5 5 C 1.47960 * 111.00002 * 99.36003 * 2 1 3 6 6 H 1.09000 * 113.85719 * 336.74597 * 5 2 1 7 7 C 1.53005 * 113.75936 * 108.09637 * 5 2 1 8 8 H 1.08997 * 109.47119 * 277.85897 * 7 5 2 9 9 C 1.53000 * 109.46919 * 37.85860 * 7 5 2 10 10 C 1.50705 * 109.46949 * 184.99575 * 9 7 5 11 11 H 1.08000 * 120.00110 * 0.02562 * 10 9 7 12 12 C 1.37880 * 119.99618 * 180.27378 * 10 9 7 13 13 N 1.31521 * 119.99473 * 179.72835 * 12 10 9 14 14 Si 1.86794 * 120.00296 * 359.72614 * 12 10 9 15 15 H 1.48507 * 109.47099 * 89.99887 * 14 12 10 16 16 H 1.48500 * 109.47344 * 210.00064 * 14 12 10 17 17 H 1.48499 * 109.47149 * 329.99914 * 14 12 10 18 18 C 1.52999 * 109.47088 * 157.85697 * 7 5 2 19 19 C 1.52994 * 117.49924 * 133.94411 * 18 7 5 20 20 C 1.53004 * 60.00256 * 252.51191 * 19 18 7 21 21 H 1.08996 * 109.46928 * 324.99899 * 1 2 3 22 22 H 1.09004 * 109.47041 * 84.99509 * 1 2 3 23 23 H 1.08999 * 109.46782 * 204.99191 * 1 2 3 24 24 H 1.08997 * 113.76011 * 23.26042 * 3 2 1 25 25 H 1.09002 * 113.86139 * 251.91204 * 3 2 1 26 26 H 1.09000 * 113.73732 * 221.92088 * 4 3 2 27 27 H 1.09001 * 113.73678 * 90.63934 * 4 3 2 28 28 H 1.09001 * 109.47266 * 64.99797 * 9 7 5 29 29 H 1.08997 * 109.47132 * 304.99898 * 9 7 5 30 30 H 0.97000 * 119.99286 * 179.97438 * 13 12 10 31 31 H 1.09004 * 115.54725 * 279.65497 * 18 7 5 32 32 H 1.08994 * 117.49892 * 359.97438 * 19 18 7 33 33 H 1.09002 * 117.49957 * 145.02361 * 19 18 7 34 34 H 1.09000 * 117.49540 * 252.51624 * 20 19 18 35 35 H 1.08992 * 117.50024 * 107.49086 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 1.0360 5 6 1.9993 -0.2247 1.3629 6 1 1.3022 0.0434 2.1569 7 6 2.6263 -1.6063 1.5605 8 1 1.8421 -2.3353 1.7647 9 6 3.3804 -2.0102 0.2920 10 6 3.8938 -3.4193 0.4400 11 1 3.7012 -3.9717 1.3479 12 6 4.6139 -4.0015 -0.5816 13 7 5.0666 -5.2293 -0.4502 14 14 4.9466 -3.0464 -2.1520 15 1 6.2211 -2.2966 -2.0149 16 1 5.0481 -3.9907 -3.2936 17 1 3.8349 -2.0925 -2.3961 18 6 3.5999 -1.5606 2.7398 19 6 3.5215 -2.6936 3.7649 20 6 3.0151 -1.2965 4.1288 21 1 -0.3633 0.8418 0.5894 22 1 -0.3633 0.0897 -1.0238 23 1 -0.3633 -0.9314 0.4342 24 1 1.3010 2.1197 0.3940 25 1 2.4462 1.6820 -0.9476 26 1 3.1922 1.5757 1.8568 27 1 3.9452 0.5051 0.5952 28 1 4.2196 -1.3321 0.1367 29 1 2.7071 -1.9567 -0.5635 30 1 5.5729 -5.6390 -1.1691 31 1 4.5842 -1.1465 2.5211 32 1 2.7761 -3.4714 3.5994 33 1 4.4544 -3.0254 4.2208 34 1 3.6149 -0.7090 4.8240 35 1 1.9369 -1.1553 4.2024 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260639545.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:54 Heat of formation + Delta-G solvation = 32.932961 kcal Electronic energy + Delta-G solvation = -14404.100130 eV Core-core repulsion = 12209.952674 eV Total energy + Delta-G solvation = -2194.147456 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.12934 -38.17916 -35.04722 -32.94692 -31.11908 -28.64862 -25.10886 -24.86598 -23.18887 -23.01559 -21.54815 -19.29620 -18.88970 -16.97255 -16.37762 -16.07801 -15.97196 -15.75198 -14.99806 -14.56810 -14.06404 -13.82565 -13.60167 -13.22268 -12.74495 -12.46088 -12.30429 -12.10360 -12.01584 -11.87293 -11.77163 -11.53167 -11.32403 -11.06469 -10.65906 -10.62624 -10.46160 -9.48252 -8.18901 -6.17359 1.35876 1.39027 1.54113 2.43415 2.97998 3.16617 3.21294 3.72348 3.92094 4.07118 4.19138 4.27519 4.31304 4.43765 4.48464 4.57044 4.72080 4.76990 4.85936 4.87436 4.94658 5.00972 5.04913 5.11773 5.28546 5.37002 5.39487 5.45377 5.60318 5.70698 5.82113 5.84467 6.33244 6.46660 6.91740 7.45348 8.97954 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.023485 B = 0.013154 C = 0.009600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.980232 B = 2128.148349 C = 2915.845273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.511 5.511 3 C 0.005 3.995 4 C -0.137 4.137 5 C 0.044 3.956 6 H 0.089 0.911 7 C -0.021 4.021 8 H 0.037 0.963 9 C 0.015 3.985 10 C -0.508 4.508 11 H 0.040 0.960 12 C 0.001 3.999 13 N -0.958 5.958 14 Si 0.939 3.061 15 H -0.270 1.270 16 H -0.291 1.291 17 H -0.250 1.250 18 C -0.127 4.127 19 C -0.189 4.189 20 C -0.157 4.157 21 H 0.051 0.949 22 H 0.068 0.932 23 H 0.055 0.945 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.008 0.992 29 H 0.022 0.978 30 H 0.260 0.740 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.005 15.334 4.833 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 N -0.233 5.233 3 C -0.123 4.123 4 C -0.175 4.175 5 C -0.064 4.064 6 H 0.107 0.893 7 C -0.040 4.040 8 H 0.056 0.944 9 C -0.023 4.023 10 C -0.546 4.546 11 H 0.058 0.942 12 C -0.194 4.194 13 N -0.600 5.600 14 Si 0.764 3.236 15 H -0.195 1.195 16 H -0.217 1.217 17 H -0.174 1.174 18 C -0.146 4.146 19 C -0.227 4.227 20 C -0.194 4.194 21 H 0.070 0.930 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.108 0.892 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.091 0.909 28 H 0.026 0.974 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.127 0.873 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.791 14.769 4.200 16.789 hybrid contribution 0.087 -0.136 -0.265 0.311 sum -6.704 14.632 3.935 16.569 Atomic orbital electron populations 1.22840 0.89324 1.01222 1.02223 1.68525 1.09693 1.19461 1.25660 1.23942 0.97484 0.90698 1.00172 1.23337 0.97815 0.97168 0.99185 1.23456 0.96696 0.95424 0.90867 0.89331 1.20267 0.95187 0.94278 0.94262 0.94408 1.19341 0.94811 0.93126 0.94995 1.21647 1.31858 0.99461 1.01648 0.94214 1.25880 0.95825 0.95644 1.02008 1.70083 1.39723 1.15657 1.34561 0.85803 0.79569 0.78941 0.79256 1.19536 1.21683 1.17351 1.21939 0.99671 1.03081 0.89897 1.22803 1.02444 0.92477 1.04937 1.23009 1.01269 0.97596 0.97487 0.93003 0.91317 0.92560 0.89221 0.89918 0.89075 0.90887 0.97350 0.95937 0.93088 0.89272 0.90978 0.89678 0.87260 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.19 9.71 127.69 1.24 1.05 16 2 N -0.51 -16.08 4.98 -910.03 -4.53 -20.61 16 3 C 0.01 0.13 7.97 86.40 0.69 0.82 16 4 C -0.14 -3.71 7.16 31.24 0.22 -3.49 16 5 C 0.04 1.36 3.08 45.02 0.14 1.49 16 6 H 0.09 2.31 7.93 -2.39 -0.02 2.29 16 7 C -0.02 -0.82 2.20 -10.79 -0.02 -0.84 16 8 H 0.04 1.62 7.94 -2.39 -0.02 1.60 16 9 C 0.01 0.71 2.92 29.85 0.09 0.80 16 10 C -0.51 -29.89 9.16 25.60 0.23 -29.66 16 11 H 0.04 2.54 7.23 -2.91 -0.02 2.52 16 12 C 0.00 0.09 5.47 84.65 0.46 0.55 16 13 N -0.96 -62.19 13.96 21.45 0.30 -61.89 16 14 Si 0.94 47.03 27.46 68.60 1.88 48.91 16 15 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 16 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 17 H -0.25 -12.02 6.55 99.48 0.65 -11.37 16 18 C -0.13 -4.58 4.01 -10.79 -0.04 -4.62 16 19 C -0.19 -6.80 9.52 30.59 0.29 -6.50 16 20 C -0.16 -4.32 10.02 30.60 0.31 -4.01 16 21 H 0.05 1.06 7.51 -2.39 -0.02 1.04 16 22 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 23 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.09 1.69 7.55 -2.39 -0.02 1.68 16 25 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.07 2.34 6.45 -2.39 -0.02 2.32 16 28 H 0.01 0.40 6.04 -2.39 -0.01 0.39 16 29 H 0.02 1.14 6.30 -2.39 -0.02 1.13 16 30 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 31 H 0.09 3.35 8.14 -2.38 -0.02 3.33 16 32 H 0.07 2.81 8.08 -2.39 -0.02 2.79 16 33 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -68.32 276.85 2.24 -66.09 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.98 Total: 11.92 kcal Atomic # 6 Polarization: -48.02 SS G_CDS: 3.61 Total: -44.41 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -4.23 Total: -82.50 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.88 Total: 48.91 kcal Total: -68.32 2.24 -66.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260639545.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.018 kcal (2) G-P(sol) polarization free energy of solvation -68.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds