Wall clock time and date at job start Mon Mar 30 2020 02:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.53556 * 2 1 4 4 C 1.53032 * 109.50332 * 239.89682 * 2 1 3 5 5 N 1.46846 * 109.52260 * 180.87921 * 4 2 1 6 6 C 1.46902 * 111.00204 * 185.84105 * 5 4 2 7 7 C 1.52999 * 117.50217 * 243.62631 * 6 5 4 8 8 C 1.52997 * 117.50565 * 174.99933 * 6 5 4 9 9 C 1.46846 * 111.19997 * 61.74591 * 5 4 2 10 10 C 1.53040 * 109.51964 * 298.25655 * 9 5 4 11 11 C 1.53119 * 109.28089 * 59.17912 * 10 9 5 12 12 H 1.08999 * 109.51878 * 62.24548 * 11 10 9 13 13 C 1.50693 * 109.57354 * 182.40778 * 11 10 9 14 14 H 1.08010 * 119.99924 * 119.71747 * 13 11 10 15 15 C 1.37875 * 120.00265 * 299.71221 * 13 11 10 16 16 N 1.31510 * 119.99908 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00178 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46962 * 59.99984 * 17 15 13 19 19 H 1.48497 * 109.46942 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46905 * 300.00427 * 17 15 13 21 21 H 1.08995 * 109.47150 * 180.10703 * 1 2 3 22 22 H 1.09008 * 109.46985 * 300.10275 * 1 2 3 23 23 H 1.08994 * 109.47635 * 60.10074 * 1 2 3 24 24 H 1.09001 * 109.46314 * 60.86655 * 4 2 1 25 25 H 1.08997 * 109.46418 * 300.89776 * 4 2 1 26 26 H 1.09013 * 115.54801 * 29.32722 * 6 5 4 27 27 H 1.08999 * 117.49350 * 359.97438 * 7 6 5 28 28 H 1.08998 * 117.50025 * 145.01661 * 7 6 5 29 29 H 1.08994 * 117.50149 * 214.97989 * 8 6 5 30 30 H 1.09006 * 117.49245 * 0.02562 * 8 6 5 31 31 H 1.08996 * 109.46231 * 58.27402 * 9 5 4 32 32 H 1.09004 * 109.46418 * 178.24241 * 9 5 4 33 33 H 1.09004 * 109.50602 * 299.23671 * 10 9 5 34 34 H 1.08998 * 109.50366 * 179.12192 * 10 9 5 35 35 H 0.96999 * 120.00220 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8944 1.0272 0.0000 4 6 2.0409 -0.7235 -1.2480 5 7 3.5092 -0.7422 -1.2378 6 6 4.0372 -1.3060 -2.4873 7 6 4.8361 -2.6074 -2.3931 8 6 5.5543 -1.2883 -2.6849 9 6 4.0229 -1.4730 -0.0723 10 6 3.5711 -0.7718 1.2108 11 6 2.0411 -0.7237 1.2488 12 1 1.6452 -1.7390 1.2691 13 6 1.5898 0.0176 2.4808 14 1 0.9974 0.9155 2.3840 15 6 1.9331 -0.4503 3.7314 16 7 2.6548 -1.5434 3.8493 17 14 1.3730 0.4682 5.2586 18 1 -0.1108 0.5190 5.2893 19 1 1.8700 -0.2342 6.4688 20 1 1.9151 1.8505 5.2314 21 1 -0.3633 -1.0276 0.0019 22 1 -0.3633 0.5155 0.8891 23 1 -0.3634 0.5122 -0.8908 24 1 1.6905 -0.2024 -2.1389 25 1 1.6647 -1.7465 -1.2543 26 1 3.4131 -1.1609 -3.3692 27 1 4.9703 -3.0450 -1.4038 28 1 4.7377 -3.3189 -3.2129 29 1 5.9283 -1.1320 -3.6966 30 1 6.1606 -0.8586 -1.8874 31 1 3.6375 -2.4925 -0.0841 32 1 5.1121 -1.4962 -0.1093 33 1 3.9677 0.2433 1.2298 34 1 3.9395 -1.3233 2.0759 35 1 2.8960 -1.8728 4.7291 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260654266.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:25 Heat of formation + Delta-G solvation = 16.504024 kcal Electronic energy + Delta-G solvation = -14442.211965 eV Core-core repulsion = 12247.352097 eV Total energy + Delta-G solvation = -2194.859868 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.01695 -36.18002 -32.83943 -31.66724 -30.07478 -26.20355 -25.08115 -22.68758 -22.03726 -21.33545 -19.41717 -18.41529 -16.45441 -16.03770 -14.91486 -14.55014 -13.71599 -13.37766 -12.98117 -12.91045 -12.57323 -12.07366 -11.62357 -11.21583 -11.16042 -10.95940 -10.89652 -10.76028 -10.61569 -10.29095 -10.11998 -9.95296 -9.80666 -9.41977 -8.82048 -8.60705 -8.25983 -7.56006 -5.93953 -3.98424 3.34659 3.39274 3.42050 4.02367 4.44787 4.49133 5.12890 5.17836 5.30774 5.36473 5.68804 5.81842 5.83206 5.88404 6.07962 6.15334 6.21699 6.25830 6.32319 6.35413 6.46397 6.58872 6.63953 6.97706 7.09447 7.14431 7.23695 7.44754 7.65834 7.74786 7.86225 8.08737 8.17890 8.51998 9.04266 9.65275 11.12372 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.044989 B = 0.009024 C = 0.007937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.227289 B = 3102.106707 C = 3526.800750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 H 0.064 0.936 4 C 0.067 3.933 5 N -0.505 5.505 6 C 0.025 3.975 7 C -0.224 4.224 8 C -0.175 4.175 9 C 0.055 3.945 10 C -0.107 4.107 11 C 0.055 3.945 12 H 0.021 0.979 13 C -0.506 4.506 14 H 0.056 0.944 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.888 3.112 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.278 1.278 21 H 0.042 0.958 22 H 0.064 0.936 23 H 0.031 0.969 24 H 0.057 0.943 25 H 0.026 0.974 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.027 0.973 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.093 0.907 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.789 -0.444 -9.849 10.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.101 4.101 3 H 0.082 0.918 4 C -0.060 4.060 5 N -0.227 5.227 6 C -0.085 4.085 7 C -0.263 4.263 8 C -0.213 4.213 9 C -0.072 4.072 10 C -0.145 4.145 11 C 0.037 3.963 12 H 0.039 0.961 13 C -0.544 4.544 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.717 3.283 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.204 1.204 21 H 0.062 0.938 22 H 0.083 0.917 23 H 0.050 0.950 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.127 0.873 27 H 0.119 0.881 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.112 0.888 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.010 -0.064 -9.647 9.855 hybrid contribution -0.429 -0.443 0.768 0.985 sum 1.581 -0.508 -8.879 9.033 Atomic orbital electron populations 1.21676 0.96234 1.00715 1.00324 1.21238 0.94290 0.99851 0.94756 0.91775 1.22175 0.86191 0.98604 0.99066 1.61843 1.08593 1.51992 1.00315 1.22665 0.93496 0.97350 0.94955 1.23531 1.07598 0.91940 1.03264 1.23002 0.95551 1.00623 1.02167 1.22378 0.98085 0.95301 0.91448 1.21709 0.99398 0.99226 0.94165 1.18702 0.91494 0.95336 0.90787 0.96107 1.21172 1.32468 1.10239 0.90534 0.92629 1.24963 0.95224 0.94995 0.98876 1.69863 1.38012 1.22033 1.23335 0.86720 0.78979 0.79996 0.82648 1.20404 1.21433 1.20357 0.93836 0.91707 0.95018 0.92411 0.95620 0.87265 0.88133 0.89503 0.89119 0.88685 0.95501 0.92610 0.93851 0.88841 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.97 37.15 0.33 -2.18 16 2 C -0.08 -1.73 2.34 -90.54 -0.21 -1.94 16 3 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 4 C 0.07 1.25 4.70 -3.84 -0.02 1.23 16 5 N -0.51 -9.39 4.86 -226.69 -1.10 -10.50 16 6 C 0.03 0.39 6.12 -67.71 -0.41 -0.02 16 7 C -0.22 -3.15 9.51 -26.73 -0.25 -3.40 16 8 C -0.18 -2.39 9.97 -26.73 -0.27 -2.65 16 9 C 0.05 1.10 4.09 -3.83 -0.02 1.09 16 10 C -0.11 -2.55 5.12 -26.65 -0.14 -2.69 16 11 C 0.06 1.37 1.67 -91.65 -0.15 1.22 16 12 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 13 C -0.51 -13.73 7.85 -34.44 -0.27 -14.00 16 14 H 0.06 1.49 6.89 -52.48 -0.36 1.13 16 15 C 0.06 1.66 5.31 -17.82 -0.09 1.56 16 16 N -0.89 -25.44 11.37 55.43 0.63 -24.81 16 17 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.06 1.31 6.79 -51.92 -0.35 0.95 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.96 8.06 -51.93 -0.42 0.54 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.11 1.51 7.99 -51.92 -0.41 1.09 16 27 H 0.10 1.54 5.91 -51.93 -0.31 1.23 16 28 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.09 1.38 7.55 -51.93 -0.39 0.99 16 31 H 0.03 0.56 7.35 -51.93 -0.38 0.17 16 32 H 0.06 1.05 6.49 -51.93 -0.34 0.72 16 33 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.09 2.47 6.17 -51.93 -0.32 2.15 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 269.40 15.07 4.06 4.06 Total: -1.00 -27.64 269.40 -8.74 -36.38 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.80 Total: 0.35 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -1.50 Total: -21.79 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: -0.47 Total: -35.31 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.64 -8.74 -36.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654266.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.881 kcal (2) G-P(sol) polarization free energy of solvation -27.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds