Wall clock time and date at job start Mon Mar 30 2020 02:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.53556 * 2 1 4 4 C 1.53032 * 109.50332 * 239.89682 * 2 1 3 5 5 N 1.46846 * 109.52260 * 180.87921 * 4 2 1 6 6 C 1.46902 * 111.00204 * 185.84105 * 5 4 2 7 7 C 1.52999 * 117.50217 * 243.62631 * 6 5 4 8 8 C 1.52997 * 117.50565 * 174.99933 * 6 5 4 9 9 C 1.46846 * 111.19997 * 61.74591 * 5 4 2 10 10 C 1.53040 * 109.51964 * 298.25655 * 9 5 4 11 11 C 1.53119 * 109.28089 * 59.17912 * 10 9 5 12 12 H 1.08999 * 109.51878 * 62.24548 * 11 10 9 13 13 C 1.50693 * 109.57354 * 182.40778 * 11 10 9 14 14 H 1.08010 * 119.99924 * 119.71747 * 13 11 10 15 15 C 1.37875 * 120.00265 * 299.71221 * 13 11 10 16 16 N 1.31510 * 119.99908 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00178 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46962 * 59.99984 * 17 15 13 19 19 H 1.48497 * 109.46942 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46905 * 300.00427 * 17 15 13 21 21 H 1.08995 * 109.47150 * 180.10703 * 1 2 3 22 22 H 1.09008 * 109.46985 * 300.10275 * 1 2 3 23 23 H 1.08994 * 109.47635 * 60.10074 * 1 2 3 24 24 H 1.09001 * 109.46314 * 60.86655 * 4 2 1 25 25 H 1.08997 * 109.46418 * 300.89776 * 4 2 1 26 26 H 1.09013 * 115.54801 * 29.32722 * 6 5 4 27 27 H 1.08999 * 117.49350 * 359.97438 * 7 6 5 28 28 H 1.08998 * 117.50025 * 145.01661 * 7 6 5 29 29 H 1.08994 * 117.50149 * 214.97989 * 8 6 5 30 30 H 1.09006 * 117.49245 * 0.02562 * 8 6 5 31 31 H 1.08996 * 109.46231 * 58.27402 * 9 5 4 32 32 H 1.09004 * 109.46418 * 178.24241 * 9 5 4 33 33 H 1.09004 * 109.50602 * 299.23671 * 10 9 5 34 34 H 1.08998 * 109.50366 * 179.12192 * 10 9 5 35 35 H 0.96999 * 120.00220 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8944 1.0272 0.0000 4 6 2.0409 -0.7235 -1.2480 5 7 3.5092 -0.7422 -1.2378 6 6 4.0372 -1.3060 -2.4873 7 6 4.8361 -2.6074 -2.3931 8 6 5.5543 -1.2883 -2.6849 9 6 4.0229 -1.4730 -0.0723 10 6 3.5711 -0.7718 1.2108 11 6 2.0411 -0.7237 1.2488 12 1 1.6452 -1.7390 1.2691 13 6 1.5898 0.0176 2.4808 14 1 0.9974 0.9155 2.3840 15 6 1.9331 -0.4503 3.7314 16 7 2.6548 -1.5434 3.8493 17 14 1.3730 0.4682 5.2586 18 1 -0.1108 0.5190 5.2893 19 1 1.8700 -0.2342 6.4688 20 1 1.9151 1.8505 5.2314 21 1 -0.3633 -1.0276 0.0019 22 1 -0.3633 0.5155 0.8891 23 1 -0.3634 0.5122 -0.8908 24 1 1.6905 -0.2024 -2.1389 25 1 1.6647 -1.7465 -1.2543 26 1 3.4131 -1.1609 -3.3692 27 1 4.9703 -3.0450 -1.4038 28 1 4.7377 -3.3189 -3.2129 29 1 5.9283 -1.1320 -3.6966 30 1 6.1606 -0.8586 -1.8874 31 1 3.6375 -2.4925 -0.0841 32 1 5.1121 -1.4962 -0.1093 33 1 3.9677 0.2433 1.2298 34 1 3.9395 -1.3233 2.0759 35 1 2.8960 -1.8728 4.7291 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260654266.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:25 Heat of formation + Delta-G solvation = 0.447017 kcal Electronic energy + Delta-G solvation = -14442.908249 eV Core-core repulsion = 12247.352097 eV Total energy + Delta-G solvation = -2195.556152 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.49561 -37.67760 -34.73283 -33.26414 -31.89051 -28.05796 -26.74999 -24.29193 -23.28282 -22.95176 -20.86151 -20.15205 -18.46513 -17.44933 -16.51272 -16.28895 -15.17764 -14.97700 -14.78993 -14.56119 -14.20429 -13.71885 -13.16160 -12.82013 -12.78644 -12.61714 -12.50900 -12.33499 -12.30085 -12.00961 -11.69287 -11.59972 -11.34450 -11.13726 -10.66100 -10.52528 -10.34309 -8.98081 -8.05263 -6.17000 1.41893 1.43047 1.50283 2.45176 2.78908 3.18819 3.23443 3.91656 4.06793 4.14995 4.17382 4.28296 4.36647 4.49595 4.64295 4.78126 4.80045 4.83650 4.90034 4.94492 4.98752 5.09481 5.14011 5.28767 5.36832 5.43175 5.51616 5.56103 5.68517 6.02547 6.05085 6.27902 6.38264 6.44442 6.93646 7.49837 8.99420 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.044989 B = 0.009024 C = 0.007937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.227289 B = 3102.106707 C = 3526.800750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.080 4.080 3 H 0.053 0.947 4 C 0.073 3.927 5 N -0.516 5.516 6 C 0.007 3.993 7 C -0.221 4.221 8 C -0.163 4.163 9 C 0.071 3.929 10 C -0.100 4.100 11 C 0.054 3.946 12 H -0.013 1.013 13 C -0.522 4.522 14 H 0.054 0.946 15 C 0.010 3.990 16 N -0.920 5.920 17 Si 0.950 3.050 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.273 1.273 21 H 0.040 0.960 22 H 0.046 0.954 23 H 0.066 0.934 24 H 0.089 0.911 25 H 0.021 0.979 26 H 0.133 0.867 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.017 0.983 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.061 0.939 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.647 0.117 -11.635 11.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.099 4.099 3 H 0.072 0.928 4 C -0.055 4.055 5 N -0.238 5.238 6 C -0.102 4.102 7 C -0.260 4.260 8 C -0.201 4.201 9 C -0.057 4.057 10 C -0.138 4.138 11 C 0.036 3.964 12 H 0.005 0.995 13 C -0.561 4.561 14 H 0.072 0.928 15 C -0.188 4.188 16 N -0.560 5.560 17 Si 0.776 3.224 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.198 1.198 21 H 0.059 0.941 22 H 0.065 0.935 23 H 0.085 0.915 24 H 0.107 0.893 25 H 0.039 0.961 26 H 0.150 0.850 27 H 0.100 0.900 28 H 0.129 0.871 29 H 0.138 0.862 30 H 0.100 0.900 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.867 0.501 -11.449 11.611 hybrid contribution -0.365 -0.630 1.304 1.493 sum 1.502 -0.129 -10.145 10.256 Atomic orbital electron populations 1.21601 0.94720 1.00835 1.01196 1.21142 0.95667 0.98843 0.94220 0.92825 1.22112 0.86335 0.98281 0.98741 1.61790 1.08616 1.52322 1.01078 1.22864 0.94895 0.98604 0.93869 1.23536 1.06969 0.92222 1.03231 1.23083 0.94018 0.99601 1.03380 1.22071 0.98590 0.94254 0.90740 1.21492 0.98911 0.98144 0.95293 1.18649 0.91908 0.93605 0.92257 0.99524 1.21537 1.32355 1.10335 0.91823 0.92756 1.25729 0.95415 0.95827 1.01826 1.70011 1.38920 1.23301 1.23782 0.85741 0.78773 0.78826 0.79093 1.19652 1.21188 1.19834 0.94051 0.93464 0.91483 0.89309 0.96102 0.84956 0.89981 0.87134 0.86192 0.89954 0.96493 0.91534 0.95303 0.92032 0.93255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 8.97 71.98 0.65 -4.01 16 2 C -0.08 -3.32 2.34 -10.74 -0.03 -3.35 16 3 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 4 C 0.07 2.57 4.70 86.32 0.41 2.98 16 5 N -0.52 -18.42 4.86 -871.11 -4.24 -22.66 16 6 C 0.01 0.19 6.12 44.91 0.27 0.46 16 7 C -0.22 -5.63 9.51 30.59 0.29 -5.34 16 8 C -0.16 -3.94 9.97 30.59 0.31 -3.63 16 9 C 0.07 2.88 4.09 86.33 0.35 3.23 16 10 C -0.10 -4.94 5.12 30.65 0.16 -4.79 16 11 C 0.05 2.77 1.67 -11.46 -0.02 2.75 16 12 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 13 C -0.52 -29.02 7.85 25.60 0.20 -28.82 16 14 H 0.05 2.96 6.89 -2.91 -0.02 2.94 16 15 C 0.01 0.56 5.31 84.65 0.45 1.01 16 16 N -0.92 -54.05 11.37 21.45 0.24 -53.80 16 17 Si 0.95 44.31 29.54 68.60 2.03 46.33 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 21 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.05 1.88 6.79 -2.38 -0.02 1.87 16 23 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.09 2.62 8.06 -2.39 -0.02 2.60 16 25 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.13 3.09 7.99 -2.38 -0.02 3.07 16 27 H 0.08 2.42 5.91 -2.39 -0.01 2.40 16 28 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.08 2.22 7.55 -2.38 -0.02 2.20 16 31 H 0.02 0.71 7.35 -2.39 -0.02 0.70 16 32 H 0.07 2.52 6.49 -2.38 -0.02 2.50 16 33 H 0.03 1.45 8.14 -2.39 -0.02 1.44 16 34 H 0.06 3.42 6.17 -2.39 -0.01 3.40 16 35 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -60.41 269.40 2.11 -58.30 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.04 Total: 11.34 kcal Atomic # 6 Polarization: -42.55 SS G_CDS: 3.04 Total: -39.51 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -3.99 Total: -76.46 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -60.41 2.11 -58.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654266.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.744 kcal (2) G-P(sol) polarization free energy of solvation -60.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds