Wall clock time and date at job start Mon Mar 30 2020 02:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46846 * 110.99002 * 2 1 4 4 C 1.53081 * 109.47272 * 185.75429 * 3 2 1 5 5 H 1.09002 * 110.01275 * 180.24968 * 4 3 2 6 6 C 1.53086 * 109.28663 * 59.86826 * 4 3 2 7 7 C 1.52984 * 109.45514 * 301.15084 * 6 4 3 8 8 C 1.53000 * 109.56839 * 300.28704 * 7 6 4 9 9 C 1.53091 * 109.41542 * 59.73515 * 8 7 6 10 10 H 1.09001 * 109.60562 * 178.91637 * 9 8 7 11 11 C 1.46839 * 110.99531 * 124.27492 * 2 1 3 12 12 C 1.53187 * 109.16383 * 299.47873 * 9 8 7 13 13 C 1.50699 * 109.56687 * 301.36546 * 12 9 8 14 14 H 1.07995 * 120.00191 * 359.97438 * 13 12 9 15 15 C 1.37883 * 119.99545 * 180.02562 * 13 12 9 16 16 N 1.31509 * 120.00396 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99615 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47082 * 89.99580 * 17 15 13 19 19 H 1.48493 * 109.46913 * 209.99869 * 17 15 13 20 20 H 1.48507 * 109.47027 * 329.99899 * 17 15 13 21 21 H 1.08999 * 109.47268 * 295.73066 * 1 2 3 22 22 H 1.09003 * 109.46961 * 55.72691 * 1 2 3 23 23 H 1.08993 * 109.47445 * 175.72256 * 1 2 3 24 24 H 1.08992 * 109.47710 * 65.75267 * 3 2 1 25 25 H 1.09002 * 109.46527 * 305.75000 * 3 2 1 26 26 H 1.09008 * 109.47264 * 181.15226 * 6 4 3 27 27 H 1.09001 * 109.47398 * 61.14745 * 6 4 3 28 28 H 1.09005 * 109.45757 * 180.26115 * 7 6 4 29 29 H 1.09000 * 109.45475 * 60.31940 * 7 6 4 30 30 H 1.08997 * 109.48152 * 299.75420 * 8 7 6 31 31 H 1.09000 * 109.48278 * 179.71790 * 8 7 6 32 32 H 1.09002 * 109.46559 * 54.25814 * 11 2 1 33 33 H 1.08994 * 109.46069 * 294.28044 * 11 2 1 34 34 H 1.09005 * 109.55988 * 181.01801 * 12 9 8 35 35 H 0.96996 * 120.00082 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5186 1.3331 -0.1447 5 1 3.9190 2.3469 -0.1413 6 6 3.8844 0.6408 -1.4601 7 6 3.3099 -0.7771 -1.4667 8 6 3.8856 -1.5687 -0.2908 9 6 3.5187 -0.8702 1.0212 10 1 3.9110 -1.4421 1.8621 11 6 1.9952 -0.7720 1.1328 12 6 4.1145 0.5410 1.0232 13 6 5.6109 0.4573 0.8649 14 1 6.0911 -0.5056 0.7723 15 6 6.3669 1.6101 0.8393 16 7 5.7822 2.7826 0.9526 17 14 8.2217 1.5064 0.6438 18 1 8.5701 1.5418 -0.7992 19 1 8.8574 2.6567 1.3349 20 1 8.7122 0.2379 1.2404 21 1 -0.3634 0.4461 0.9257 22 1 -0.3633 0.5787 -0.8493 23 1 -0.3634 -1.0247 -0.0766 24 1 1.7313 1.8615 0.9369 25 1 1.5646 1.9252 -0.8341 26 1 4.9692 0.5939 -1.5566 27 1 3.4694 1.2049 -2.2954 28 1 3.5744 -1.2717 -2.4014 29 1 2.2248 -0.7295 -1.3759 30 1 4.9703 -1.6207 -0.3839 31 1 3.4715 -2.5770 -0.2939 32 1 1.5649 -1.7735 1.1210 33 1 1.7307 -0.2741 2.0657 34 1 3.8724 1.0380 1.9627 35 1 6.3140 3.5936 0.9342 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260961443.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:17 Heat of formation + Delta-G solvation = 2.128697 kcal Electronic energy + Delta-G solvation = -15227.066734 eV Core-core repulsion = 13031.583505 eV Total energy + Delta-G solvation = -2195.483229 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.64927 -34.63750 -32.39664 -31.32987 -29.69136 -26.89309 -25.19175 -24.19913 -21.52789 -20.35827 -20.31596 -17.52977 -16.02725 -15.28371 -14.49458 -14.08900 -13.86086 -13.57015 -12.97560 -12.69760 -12.22823 -11.87171 -11.63090 -11.53814 -11.24296 -10.90527 -10.71636 -10.47456 -10.42223 -10.31597 -9.96865 -9.73713 -9.49444 -8.84690 -8.70053 -8.41941 -8.16133 -7.12180 -5.91967 -3.94441 3.34130 3.41032 3.44115 4.49034 4.57436 5.38236 5.54700 5.64929 5.74347 5.90377 6.01481 6.11831 6.13787 6.20420 6.29625 6.41091 6.43813 6.60911 6.77838 6.85375 6.91353 7.05619 7.13171 7.13774 7.32808 7.44039 7.56816 7.64325 7.79160 7.90262 7.94759 8.03798 8.22079 8.54819 9.06564 9.67636 11.14472 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047025 B = 0.011711 C = 0.011123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.288706 B = 2390.442607 C = 2516.812011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.520 5.520 3 C 0.058 3.942 4 C -0.079 4.079 5 H 0.100 0.900 6 C -0.085 4.085 7 C -0.144 4.144 8 C -0.089 4.089 9 C -0.081 4.081 10 H 0.055 0.945 11 C 0.062 3.938 12 C 0.059 3.941 13 C -0.497 4.497 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.893 5.893 17 Si 0.884 3.116 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.276 1.276 21 H 0.017 0.983 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.022 0.978 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.024 0.976 28 H 0.018 0.982 29 H 0.121 0.879 30 H 0.057 0.943 31 H 0.028 0.972 32 H 0.058 0.942 33 H 0.024 0.976 34 H 0.019 0.981 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.492 -4.347 -2.035 8.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.244 5.244 3 C -0.069 4.069 4 C -0.098 4.098 5 H 0.118 0.882 6 C -0.122 4.122 7 C -0.182 4.182 8 C -0.126 4.126 9 C -0.100 4.100 10 H 0.074 0.926 11 C -0.066 4.066 12 C 0.041 3.959 13 C -0.535 4.535 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.713 3.287 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.201 1.201 21 H 0.036 0.964 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.041 0.959 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.043 0.957 28 H 0.037 0.963 29 H 0.138 0.862 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.037 0.963 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.295 -4.375 -2.441 8.849 hybrid contribution 0.822 0.459 0.653 1.146 sum -6.473 -3.916 -1.788 7.773 Atomic orbital electron populations 1.22424 0.89722 1.01212 0.99819 1.62466 1.05268 1.14825 1.41820 1.22338 0.98795 0.87198 0.98601 1.21293 0.89264 1.02882 0.96321 0.88207 1.21207 1.00315 0.94987 0.95735 1.22303 1.05819 0.95279 0.94755 1.21271 1.00239 0.95858 0.95267 1.21294 0.91621 1.00046 0.97003 0.92645 1.22186 0.97379 0.96425 0.90624 1.18699 0.94500 0.88951 0.93780 1.21135 0.91464 0.92307 1.48599 0.92611 1.24924 0.97916 0.95587 0.95523 1.69861 1.34962 0.97247 1.51187 0.86711 0.86426 0.77462 0.78113 1.20805 1.21449 1.20059 0.96440 0.91993 0.92130 0.95925 0.92526 0.92296 0.95735 0.96339 0.86153 0.92417 0.95336 0.92360 0.95811 0.96332 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.59 60.07 0.58 0.81 16 2 N -0.52 -9.20 1.38 -242.91 -0.34 -9.54 16 3 C 0.06 1.14 4.88 -3.81 -0.02 1.12 16 4 C -0.08 -1.82 2.59 -90.44 -0.23 -2.05 16 5 H 0.10 2.63 6.18 -51.93 -0.32 2.31 16 6 C -0.08 -1.87 5.24 -26.69 -0.14 -2.01 16 7 C -0.14 -2.87 5.57 -26.74 -0.15 -3.02 16 8 C -0.09 -1.80 5.24 -26.68 -0.14 -1.94 16 9 C -0.08 -1.70 2.79 -90.44 -0.25 -1.95 16 10 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 11 C 0.06 1.12 4.87 -3.82 -0.02 1.10 16 12 C 0.06 1.45 1.92 -91.58 -0.18 1.28 16 13 C -0.50 -13.33 6.52 -34.44 -0.22 -13.56 16 14 H 0.06 1.50 6.62 -52.49 -0.35 1.16 16 15 C 0.06 1.66 5.31 -17.82 -0.09 1.57 16 16 N -0.89 -25.26 11.39 55.43 0.63 -24.63 16 17 Si 0.88 21.36 29.54 -169.99 -5.02 16.34 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 22 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 1.04 8.09 -51.93 -0.42 0.62 16 26 H 0.06 1.44 7.15 -51.92 -0.37 1.07 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.12 2.33 4.74 -62.94 -0.30 2.03 16 30 H 0.06 1.26 6.50 -51.93 -0.34 0.93 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 255.21 15.07 3.85 3.85 Total: -1.00 -27.31 255.21 -7.63 -34.94 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -5.88 Total: -2.31 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -0.87 Total: -18.64 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.30 Total: -34.17 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.31 -7.63 -34.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260961443.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.065 kcal (2) G-P(sol) polarization free energy of solvation -27.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds