Wall clock time and date at job start Mon Mar 30 2020 02:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46818 * 111.00065 * 2 1 4 4 C 1.53021 * 109.77318 * 187.55734 * 3 2 1 5 5 C 1.53289 * 109.19364 * 299.06362 * 4 3 2 6 6 H 1.08996 * 109.56895 * 295.68342 * 5 4 3 7 7 C 1.50700 * 109.56510 * 175.32553 * 5 4 3 8 8 H 1.07993 * 120.00109 * 305.70236 * 7 5 4 9 9 C 1.37883 * 119.99728 * 125.70502 * 7 5 4 10 10 N 1.31514 * 120.00120 * 359.97438 * 9 7 5 11 11 Si 1.86796 * 119.99657 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47459 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47417 * 119.99766 * 11 9 7 14 14 H 1.48505 * 109.47001 * 239.99739 * 11 9 7 15 15 C 1.52806 * 108.88228 * 55.50448 * 5 4 3 16 16 C 1.53356 * 113.56851 * 174.95613 * 15 5 4 17 17 C 1.53856 * 87.06467 * 270.53498 * 16 15 5 18 18 C 1.53384 * 113.51729 * 77.03292 * 15 5 4 19 19 C 1.47002 * 111.00484 * 124.16548 * 2 1 3 20 20 H 1.09001 * 109.47197 * 295.83289 * 1 2 3 21 21 H 1.09003 * 109.47719 * 55.83343 * 1 2 3 22 22 H 1.09004 * 109.47254 * 175.83886 * 1 2 3 23 23 H 1.09006 * 109.41821 * 307.64228 * 3 2 1 24 24 H 1.08994 * 109.42436 * 67.45688 * 3 2 1 25 25 H 1.08993 * 109.51676 * 58.98024 * 4 3 2 26 26 H 1.09002 * 109.51435 * 179.09514 * 4 3 2 27 27 H 0.96999 * 119.99734 * 179.97438 * 10 9 7 28 28 H 1.09007 * 113.63039 * 25.09952 * 16 15 5 29 29 H 1.09004 * 113.63235 * 155.96958 * 16 15 5 30 30 H 1.08998 * 113.60278 * 89.47825 * 17 16 15 31 31 H 1.09005 * 113.59964 * 220.34525 * 17 16 15 32 32 H 1.09005 * 113.63400 * 203.98604 * 18 15 5 33 33 H 1.08996 * 113.63678 * 334.86188 * 18 15 5 34 34 H 1.09005 * 109.50016 * 56.56290 * 19 2 1 35 35 H 1.09002 * 109.50295 * 296.44541 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9951 1.3707 0.0000 4 6 3.5133 1.3424 -0.1894 5 6 4.1516 0.5710 0.9713 6 1 3.9754 1.1049 1.9051 7 6 5.6341 0.4389 0.7347 8 1 5.9977 0.0130 -0.1886 9 6 6.5262 0.8619 1.6972 10 7 6.0834 1.3811 2.8215 11 14 8.3637 0.6988 1.4036 12 1 8.5998 0.0885 0.0706 13 1 8.9940 2.0425 1.4520 14 1 8.9582 -0.1649 2.4552 15 6 3.5198 -0.8181 1.0488 16 6 4.1672 -1.7285 2.0995 17 6 5.1367 -2.1819 0.9943 18 6 4.0435 -1.7889 -0.0171 19 6 1.9959 -0.7707 1.1355 20 1 -0.3634 0.4478 0.9250 21 1 -0.3635 0.5771 -0.8503 22 1 -0.3634 -1.0250 -0.0746 23 1 1.5388 1.9340 -0.8141 24 1 1.7571 1.8503 0.9494 25 1 3.7537 0.8484 -1.1307 26 1 3.8974 2.3624 -0.2048 27 1 6.7110 1.6782 3.4988 28 1 4.6521 -1.1842 2.9100 29 1 3.5092 -2.5211 2.4559 30 1 6.0360 -1.5700 0.9246 31 1 5.3513 -3.2505 1.0135 32 1 3.3518 -2.5993 -0.2477 33 1 4.4275 -1.2934 -0.9087 34 1 1.5977 -1.7849 1.1030 35 1 1.6991 -0.2924 2.0689 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260970557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:45 Heat of formation + Delta-G solvation = 2.712638 kcal Electronic energy + Delta-G solvation = -14955.299094 eV Core-core repulsion = 12759.841187 eV Total energy + Delta-G solvation = -2195.457907 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.12442 -37.54055 -34.90129 -32.89128 -29.77409 -28.60093 -26.27924 -25.90433 -23.48161 -23.15786 -21.12115 -18.80370 -18.34486 -16.74683 -16.25322 -16.06699 -15.69641 -15.47083 -14.69306 -14.19610 -13.89744 -13.68080 -13.34467 -12.97437 -12.84753 -12.73874 -12.62714 -12.24988 -12.13891 -11.96501 -11.52572 -11.35167 -11.15121 -10.80485 -10.43778 -10.33325 -10.23159 -9.13373 -8.03711 -6.02237 1.38916 1.43452 1.52287 2.46679 3.12947 3.26215 4.06995 4.15452 4.16136 4.38027 4.40090 4.44757 4.57437 4.66316 4.75299 4.85508 4.87261 4.90343 5.03698 5.04451 5.07951 5.13757 5.29241 5.36632 5.48319 5.58098 5.73829 5.76582 5.87302 6.03683 6.17841 6.29990 6.34581 6.53458 7.07150 7.54481 9.05570 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.041404 B = 0.011771 C = 0.010478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.097722 B = 2378.058606 C = 2671.721472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.064 3.936 4 C -0.099 4.099 5 C 0.049 3.951 6 H 0.023 0.977 7 C -0.484 4.484 8 H 0.052 0.948 9 C 0.017 3.983 10 N -0.929 5.929 11 Si 0.932 3.068 12 H -0.264 1.264 13 H -0.287 1.287 14 H -0.285 1.285 15 C -0.066 4.066 16 C -0.123 4.123 17 C -0.139 4.139 18 C -0.097 4.097 19 C 0.078 3.922 20 H 0.019 0.981 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.012 0.988 25 H 0.051 0.949 26 H 0.039 0.961 27 H 0.256 0.744 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.842 -4.372 -4.388 9.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.064 4.064 4 C -0.137 4.137 5 C 0.030 3.970 6 H 0.041 0.959 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.181 4.181 10 N -0.570 5.570 11 Si 0.759 3.241 12 H -0.188 1.188 13 H -0.213 1.213 14 H -0.211 1.211 15 C -0.067 4.067 16 C -0.161 4.161 17 C -0.176 4.176 18 C -0.135 4.135 19 C -0.050 4.050 20 H 0.037 0.963 21 H 0.097 0.903 22 H 0.096 0.904 23 H 0.100 0.900 24 H 0.030 0.970 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -7.629 -4.520 -4.669 10.021 hybrid contribution 0.951 0.710 1.114 1.628 sum -6.678 -3.810 -3.555 8.470 Atomic orbital electron populations 1.22424 0.86454 1.02840 1.00528 1.61955 1.08155 1.13504 1.43246 1.22050 0.96136 0.89113 0.99127 1.21598 0.93176 0.99031 0.99892 1.18629 0.93391 0.90812 0.94158 0.95854 1.21210 0.91822 1.37679 1.01475 0.92939 1.25526 1.01733 0.95514 0.95278 1.70036 1.34914 1.44033 1.08041 0.85890 0.82333 0.77453 0.78389 1.18774 1.21311 1.21093 1.21683 0.91994 0.96480 0.96512 1.22632 0.98531 0.98232 0.96661 1.23083 0.98993 0.98801 0.96681 1.22522 0.97196 0.97584 0.96171 1.22051 0.95163 0.97598 0.90207 0.96267 0.90343 0.90362 0.90048 0.96973 0.93002 0.94187 0.93498 0.94697 0.90557 0.89735 0.92639 0.90542 0.93554 0.90137 0.97167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.60 127.69 1.23 1.87 16 2 N -0.54 -18.25 4.92 -922.93 -4.54 -22.79 16 3 C 0.06 2.30 5.41 86.33 0.47 2.77 16 4 C -0.10 -4.25 5.30 30.70 0.16 -4.08 16 5 C 0.05 2.39 2.13 -11.51 -0.02 2.36 16 6 H 0.02 1.32 6.94 -2.39 -0.02 1.31 16 7 C -0.48 -25.36 4.61 25.60 0.12 -25.24 16 8 H 0.05 2.76 6.67 -2.91 -0.02 2.74 16 9 C 0.02 0.91 5.29 84.66 0.45 1.36 16 10 N -0.93 -54.14 12.62 21.45 0.27 -53.87 16 11 Si 0.93 43.47 29.49 68.60 2.02 45.50 16 12 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 13 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 14 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 15 C -0.07 -2.75 0.83 -52.09 -0.04 -2.80 16 16 C -0.12 -5.15 7.00 31.00 0.22 -4.93 16 17 C -0.14 -5.65 7.44 31.23 0.23 -5.42 16 18 C -0.10 -3.77 6.73 31.07 0.21 -3.56 16 19 C 0.08 2.80 4.61 86.19 0.40 3.20 16 20 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 21 H 0.08 1.73 8.07 -2.39 -0.02 1.71 16 22 H 0.08 1.73 8.14 -2.38 -0.02 1.72 16 23 H 0.08 2.52 8.05 -2.38 -0.02 2.50 16 24 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.05 2.21 7.59 -2.39 -0.02 2.20 16 26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 28 H 0.03 1.72 8.09 -2.38 -0.02 1.70 16 29 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 30 H 0.08 3.97 5.10 -2.39 -0.01 3.96 16 31 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.08 2.58 8.05 -2.38 -0.02 2.56 16 33 H 0.05 1.91 6.87 -2.39 -0.02 1.89 16 34 H 0.08 2.55 8.08 -2.38 -0.02 2.53 16 35 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -58.01 266.06 2.20 -55.81 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 1.04 Total: 9.82 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: 3.41 Total: -34.48 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -4.27 Total: -76.66 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.02 Total: 45.50 kcal Total: -58.01 2.20 -55.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260970557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.527 kcal (2) G-P(sol) polarization free energy of solvation -58.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds