Wall clock time and date at job start Mon Mar 30 2020 02:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46809 * 111.00037 * 2 1 4 4 C 1.53029 * 109.77238 * 172.45113 * 3 2 1 5 5 C 1.53280 * 109.18929 * 60.93963 * 4 3 2 6 6 H 1.09002 * 109.56794 * 64.30105 * 5 4 3 7 7 C 1.50702 * 109.56800 * 184.54163 * 5 4 3 8 8 H 1.07993 * 120.00406 * 119.76219 * 7 5 4 9 9 C 1.37875 * 119.99921 * 299.76007 * 7 5 4 10 10 N 1.31520 * 120.00016 * 0.02562 * 9 7 5 11 11 Si 1.86799 * 120.00445 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46949 * 59.99863 * 11 9 7 13 13 H 1.48491 * 109.47449 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46709 * 300.00340 * 11 9 7 15 15 C 1.52815 * 108.88306 * 304.48117 * 5 4 3 16 16 C 1.53380 * 113.51257 * 282.96336 * 15 5 4 17 17 C 1.53855 * 86.96097 * 220.11941 * 16 15 5 18 18 C 1.53358 * 113.57149 * 185.04131 * 15 5 4 19 19 C 1.47002 * 111.00035 * 235.81978 * 2 1 3 20 20 H 1.09005 * 109.46672 * 56.04602 * 1 2 3 21 21 H 1.08998 * 109.47301 * 176.04281 * 1 2 3 22 22 H 1.09001 * 109.47074 * 296.05292 * 1 2 3 23 23 H 1.08997 * 109.42466 * 52.35576 * 3 2 1 24 24 H 1.09007 * 109.37424 * 292.50881 * 3 2 1 25 25 H 1.09003 * 109.51235 * 301.02509 * 4 3 2 26 26 H 1.08993 * 109.56481 * 180.89039 * 4 3 2 27 27 H 0.97000 * 119.99931 * 180.02562 * 10 9 7 28 28 H 1.09000 * 113.64013 * 334.63656 * 16 15 5 29 29 H 1.09004 * 113.63317 * 105.60336 * 16 15 5 30 30 H 1.09003 * 113.60322 * 270.56552 * 17 16 15 31 31 H 1.08994 * 113.60522 * 139.68995 * 17 16 15 32 32 H 1.08998 * 113.62945 * 254.35147 * 18 15 5 33 33 H 1.09000 * 113.62872 * 25.30487 * 18 15 5 34 34 H 1.08999 * 109.50530 * 303.42747 * 19 2 1 35 35 H 1.09006 * 109.50033 * 63.50270 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3706 0.0000 4 6 3.5134 1.3423 0.1892 5 6 4.1515 0.5711 -0.9717 6 1 3.9748 1.1049 -1.9055 7 6 5.6345 0.4417 -0.7371 8 1 6.0851 -0.5364 -0.6560 9 6 6.4161 1.5721 -0.6259 10 7 5.8673 2.7633 -0.7240 11 14 8.2544 1.4118 -0.3357 12 1 8.8691 0.6597 -1.4591 13 1 8.8623 2.7641 -0.2534 14 1 8.4931 0.6840 0.9365 15 6 3.5199 -0.8182 -1.0490 16 6 4.0441 -1.7889 0.0166 17 6 4.0284 -2.8701 -1.0779 18 6 4.1669 -1.7285 -2.1000 19 6 1.9959 -0.7710 -1.1353 20 1 -0.3633 0.5740 -0.8525 21 1 -0.3634 -1.0252 -0.0709 22 1 -0.3633 0.4514 0.9233 23 1 1.5390 1.9340 0.8139 24 1 1.7572 1.8493 -0.9500 25 1 3.7539 0.8481 1.1305 26 1 3.8984 2.3618 0.2045 27 1 6.4172 3.5585 -0.6462 28 1 5.0440 -1.5452 0.3758 29 1 3.3363 -1.9747 0.8246 30 1 3.0820 -3.4063 -1.1482 31 1 4.8914 -3.5351 -1.0468 32 1 3.5580 -1.8657 -2.9935 33 1 5.2008 -1.4680 -2.3266 34 1 1.5979 -1.7852 -1.1025 35 1 1.6983 -0.2934 -2.0689 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260970558.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:47 Heat of formation + Delta-G solvation = 0.790725 kcal Electronic energy + Delta-G solvation = -14857.445756 eV Core-core repulsion = 12661.904508 eV Total energy + Delta-G solvation = -2195.541248 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.13920 -37.46925 -35.35766 -32.59856 -29.63727 -28.62858 -26.33676 -25.75703 -24.06270 -22.89862 -21.09833 -19.14718 -17.85768 -17.04033 -16.17562 -16.05709 -15.63051 -15.38836 -14.63741 -14.45708 -13.85230 -13.74308 -13.37688 -12.89643 -12.80210 -12.78408 -12.65710 -12.44716 -12.09295 -11.87368 -11.69969 -11.53657 -11.28322 -10.75943 -10.50708 -10.25866 -10.12216 -9.14449 -8.01787 -6.10871 1.42622 1.43377 1.50161 2.46960 3.11944 3.26345 3.97330 4.05770 4.11247 4.25178 4.36818 4.42803 4.55799 4.63857 4.72398 4.81207 4.86410 4.92698 5.00244 5.02758 5.16554 5.20273 5.28824 5.34407 5.40190 5.50535 5.70202 5.81763 5.82576 6.05552 6.10649 6.31884 6.38054 6.51849 6.99124 7.54859 9.03708 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.034306 B = 0.012371 C = 0.009835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.981336 B = 2262.725905 C = 2846.424299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.066 3.934 4 C -0.094 4.094 5 C 0.065 3.935 6 H -0.022 1.022 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.008 3.992 10 N -0.923 5.923 11 Si 0.945 3.055 12 H -0.273 1.273 13 H -0.290 1.290 14 H -0.273 1.273 15 C -0.079 4.079 16 C -0.114 4.114 17 C -0.126 4.126 18 C -0.127 4.127 19 C 0.089 3.911 20 H 0.021 0.979 21 H 0.081 0.919 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.010 0.990 25 H 0.031 0.969 26 H 0.056 0.944 27 H 0.256 0.744 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.723 -7.690 0.270 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.062 4.062 4 C -0.133 4.133 5 C 0.047 3.953 6 H -0.004 1.004 7 C -0.546 4.546 8 H 0.080 0.920 9 C -0.189 4.189 10 N -0.563 5.563 11 Si 0.772 3.228 12 H -0.198 1.198 13 H -0.215 1.215 14 H -0.198 1.198 15 C -0.079 4.079 16 C -0.152 4.152 17 C -0.163 4.163 18 C -0.165 4.165 19 C -0.039 4.039 20 H 0.039 0.961 21 H 0.100 0.900 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.028 0.972 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -7.530 -7.730 0.709 10.815 hybrid contribution 0.932 1.071 -0.683 1.575 sum -6.598 -6.659 0.026 9.375 Atomic orbital electron populations 1.22422 0.86330 1.02527 1.00917 1.61928 1.08226 1.13557 1.43467 1.22046 0.96743 0.88886 0.98513 1.21424 0.91879 1.01302 0.98681 1.18437 0.93612 0.90989 0.92269 1.00415 1.21541 0.93524 0.92246 1.47282 0.91973 1.25707 1.02081 0.95365 0.95774 1.70035 1.36392 0.97785 1.52131 0.85808 0.81426 0.76816 0.78776 1.19826 1.21544 1.19782 1.21616 0.93270 0.95562 0.97470 1.22714 1.00609 0.95636 0.96222 1.22816 1.01912 0.95596 0.95953 1.22813 1.00630 0.96589 0.96497 1.21791 0.93708 0.97942 0.90433 0.96076 0.90008 0.90739 0.91170 0.97156 0.95032 0.92504 0.93479 0.91549 0.92281 0.89021 0.91590 0.91921 0.91473 0.89358 0.96480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.61 127.69 1.23 1.91 16 2 N -0.55 -19.18 4.92 -922.91 -4.54 -23.72 16 3 C 0.07 2.66 5.41 86.33 0.47 3.12 16 4 C -0.09 -4.63 5.03 30.70 0.15 -4.47 16 5 C 0.07 3.30 1.85 -11.51 -0.02 3.28 16 6 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 7 C -0.51 -27.53 6.82 25.60 0.17 -27.36 16 8 H 0.06 3.28 5.43 -2.91 -0.02 3.27 16 9 C 0.01 0.45 5.31 84.65 0.45 0.90 16 10 N -0.92 -54.23 11.40 21.45 0.24 -53.99 16 11 Si 0.95 44.21 29.54 68.60 2.03 46.23 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 14 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 15 C -0.08 -3.19 0.77 -52.09 -0.04 -3.23 16 16 C -0.11 -4.35 6.75 31.01 0.21 -4.14 16 17 C -0.13 -3.90 7.73 31.17 0.24 -3.66 16 18 C -0.13 -4.68 6.96 31.00 0.22 -4.47 16 19 C 0.09 3.11 4.53 86.19 0.39 3.50 16 20 H 0.02 0.54 8.14 -2.38 -0.02 0.52 16 21 H 0.08 1.81 8.06 -2.39 -0.02 1.79 16 22 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.07 2.56 8.10 -2.39 -0.02 2.55 16 24 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 25 H 0.03 1.58 8.09 -2.39 -0.02 1.56 16 26 H 0.06 3.14 6.24 -2.39 -0.01 3.12 16 27 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.07 2.87 5.89 -2.39 -0.01 2.86 16 29 H 0.06 2.16 8.09 -2.39 -0.02 2.14 16 30 H 0.09 2.38 7.62 -2.39 -0.02 2.36 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 2.06 8.09 -2.39 -0.02 2.04 16 33 H 0.07 2.79 6.79 -2.39 -0.02 2.78 16 34 H 0.09 2.62 7.27 -2.39 -0.02 2.60 16 35 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 Total: -1.00 -59.86 264.76 2.24 -57.62 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.04 Total: 8.47 kcal Atomic # 6 Polarization: -38.08 SS G_CDS: 3.47 Total: -34.62 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -4.29 Total: -77.71 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -59.86 2.24 -57.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260970558.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.411 kcal (2) G-P(sol) polarization free energy of solvation -59.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds