Wall clock time and date at job start Mon Mar 30 2020 02:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46844 * 111.00014 * 2 1 4 4 C 1.53039 * 109.52532 * 174.15847 * 3 2 1 5 5 C 1.53124 * 109.27167 * 59.18120 * 4 3 2 6 6 C 1.53001 * 109.57087 * 182.40929 * 5 4 3 7 7 H 1.08998 * 115.55229 * 79.43091 * 6 5 4 8 8 C 1.53005 * 117.49857 * 225.13488 * 6 5 4 9 9 C 1.53003 * 117.49803 * 293.75608 * 6 5 4 10 10 H 1.09000 * 117.49419 * 144.99873 * 9 6 5 11 11 C 1.50696 * 117.50021 * 0.02562 * 9 6 5 12 12 H 1.07999 * 119.99949 * 354.58905 * 11 9 6 13 13 C 1.37876 * 119.99945 * 174.58534 * 11 9 6 14 14 N 1.31521 * 119.99956 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 120.00081 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46908 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46893 * 119.99992 * 15 13 11 18 18 H 1.48503 * 109.47204 * 240.00040 * 15 13 11 19 19 C 1.53117 * 109.16528 * 302.34589 * 5 4 3 20 20 C 1.46845 * 111.00041 * 235.79351 * 2 1 3 21 21 H 1.08999 * 109.46682 * 184.20830 * 1 2 3 22 22 H 1.08994 * 109.46830 * 64.20627 * 1 2 3 23 23 H 1.09003 * 109.46875 * 304.20871 * 1 2 3 24 24 H 1.08993 * 109.46545 * 294.18052 * 3 2 1 25 25 H 1.09011 * 109.46184 * 54.14830 * 3 2 1 26 26 H 1.08994 * 109.50280 * 299.24763 * 4 3 2 27 27 H 1.08999 * 109.50553 * 179.11706 * 4 3 2 28 28 H 1.09002 * 109.52232 * 62.25581 * 5 4 3 29 29 H 1.08999 * 117.50306 * 214.98101 * 8 6 5 30 30 H 1.09004 * 117.49482 * 0.02562 * 8 6 5 31 31 H 0.97002 * 119.99825 * 179.97438 * 14 13 11 32 32 H 1.09005 * 109.50285 * 297.72029 * 19 5 4 33 33 H 1.08996 * 109.50666 * 177.59578 * 19 5 4 34 34 H 1.09003 * 109.46125 * 305.85745 * 20 2 1 35 35 H 1.09001 * 109.46277 * 65.81572 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 0.1468 5 6 4.1188 0.5370 -1.0144 6 6 5.6363 0.4449 -0.8421 7 1 5.9841 -0.3046 -0.1313 8 6 6.5044 0.7068 -2.0746 9 6 6.4396 1.7426 -0.9503 10 1 7.3159 1.8468 -0.3105 11 6 5.6756 3.0136 -1.2178 12 1 4.6140 2.9748 -1.4122 13 6 6.3319 4.2262 -1.2142 14 7 7.6246 4.2735 -0.9768 15 14 5.3850 5.8018 -1.5465 16 1 3.9547 5.4793 -1.7819 17 1 5.5017 6.7059 -0.3742 18 1 5.9458 6.4726 -2.7468 19 6 3.5182 -0.8715 -1.0210 20 6 1.9953 -0.7707 -1.1338 21 1 -0.3633 -1.0249 0.0754 22 1 -0.3633 0.4472 -0.9252 23 1 -0.3633 0.5778 0.8499 24 1 1.7325 1.8608 -0.9375 25 1 1.5635 1.9257 0.8331 26 1 3.7814 0.8567 1.0906 27 1 3.9100 2.3512 0.1310 28 1 3.8887 1.0355 -1.9560 29 1 7.4235 0.1295 -2.1748 30 1 5.9943 0.9451 -3.0080 31 1 8.0864 5.1266 -0.9747 32 1 3.7813 -1.3836 -0.0954 33 1 3.9099 -1.4302 -1.8709 34 1 1.5634 -1.7715 -1.1243 35 1 1.7324 -0.2708 -2.0660 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260997115.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:28 Heat of formation + Delta-G solvation = -6.020238 kcal Electronic energy + Delta-G solvation = -14261.612547 eV Core-core repulsion = 12065.775954 eV Total energy + Delta-G solvation = -2195.836593 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.24492 -37.92091 -34.48201 -33.37148 -31.70111 -27.92631 -27.41970 -23.99085 -23.91020 -22.26713 -21.04724 -20.53887 -18.37619 -16.60591 -16.55426 -15.92931 -15.76561 -15.27805 -15.16087 -14.49504 -14.17469 -13.52538 -13.25012 -13.22036 -12.88762 -12.81867 -12.61748 -12.47772 -12.20136 -11.92969 -11.62160 -11.41385 -11.30754 -11.17243 -10.81163 -10.25735 -10.02133 -9.23641 -8.16072 -6.16201 1.39222 1.41174 1.52596 2.41330 3.01233 3.08729 3.59318 3.94048 4.02915 4.15836 4.34338 4.46591 4.51444 4.59052 4.66808 4.70536 4.73332 4.84151 4.93118 4.95389 5.00267 5.03128 5.06648 5.14265 5.20242 5.35336 5.52687 5.55631 5.68662 5.77115 5.83164 6.18484 6.24038 6.42216 6.89936 7.43424 8.96598 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033397 B = 0.009731 C = 0.007979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.206110 B = 2876.791492 C = 3508.164316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.553 5.553 3 C 0.061 3.939 4 C -0.111 4.111 5 C -0.034 4.034 6 C -0.154 4.154 7 H 0.088 0.912 8 C -0.207 4.207 9 C -0.005 4.005 10 H 0.043 0.957 11 C -0.486 4.486 12 H 0.071 0.929 13 C 0.007 3.993 14 N -0.931 5.931 15 Si 0.954 3.046 16 H -0.261 1.261 17 H -0.279 1.279 18 H -0.283 1.283 19 C -0.104 4.104 20 C 0.059 3.941 21 H 0.081 0.919 22 H 0.023 0.977 23 H 0.073 0.927 24 H 0.021 0.979 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.261 0.739 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.566 -7.917 0.615 14.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.278 5.278 3 C -0.066 4.066 4 C -0.148 4.148 5 C -0.053 4.053 6 C -0.172 4.172 7 H 0.106 0.894 8 C -0.245 4.245 9 C -0.024 4.024 10 H 0.061 0.939 11 C -0.524 4.524 12 H 0.089 0.911 13 C -0.191 4.191 14 N -0.570 5.570 15 Si 0.780 3.220 16 H -0.185 1.185 17 H -0.205 1.205 18 H -0.209 1.209 19 C -0.141 4.141 20 C -0.068 4.068 21 H 0.100 0.900 22 H 0.041 0.959 23 H 0.092 0.908 24 H 0.039 0.961 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -12.281 -8.017 1.060 14.704 hybrid contribution 0.026 1.395 -0.984 1.707 sum -12.254 -6.622 0.077 13.929 Atomic orbital electron populations 1.22414 0.86240 1.03021 1.00637 1.61980 1.08557 1.13566 1.43681 1.22060 0.95486 0.89206 0.99885 1.21647 0.93662 1.01336 0.98200 1.20425 0.91805 0.95653 0.97397 1.22300 0.93373 1.01477 1.00090 0.89418 1.23027 1.00642 1.07293 0.93502 1.19851 0.96831 0.88714 0.96986 0.93924 1.21063 0.94857 0.90512 1.45951 0.91119 1.25871 0.95652 1.02541 0.95040 1.70107 1.09778 1.26357 1.50777 0.85551 0.79291 0.79482 0.77703 1.18473 1.20511 1.20863 1.21590 0.94249 0.96101 1.02192 1.22102 0.95301 0.98534 0.90894 0.90021 0.95879 0.90841 0.96078 0.90262 0.92466 0.91355 0.93918 0.90937 0.91129 0.93008 0.91462 0.91149 0.89048 0.95698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.59 127.69 1.22 1.73 16 2 N -0.55 -14.96 4.91 -922.58 -4.53 -19.49 16 3 C 0.06 1.90 5.46 86.33 0.47 2.37 16 4 C -0.11 -4.09 5.00 30.65 0.15 -3.93 16 5 C -0.03 -1.27 1.62 -10.71 -0.02 -1.29 16 6 C -0.15 -6.48 5.07 -10.79 -0.05 -6.54 16 7 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 8 C -0.21 -9.39 9.88 30.60 0.30 -9.08 16 9 C -0.01 -0.27 5.58 -11.54 -0.06 -0.34 16 10 H 0.04 2.48 7.77 -2.39 -0.02 2.46 16 11 C -0.49 -26.58 7.37 25.60 0.19 -26.39 16 12 H 0.07 3.73 5.31 -2.91 -0.02 3.71 16 13 C 0.01 0.39 5.46 84.65 0.46 0.85 16 14 N -0.93 -55.82 13.05 21.45 0.28 -55.54 16 15 Si 0.95 43.70 29.54 68.60 2.03 45.72 16 16 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 C -0.10 -3.07 5.38 30.64 0.16 -2.90 16 20 C 0.06 1.54 5.46 86.32 0.47 2.01 16 21 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 23 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 24 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.08 2.24 8.09 -2.38 -0.02 2.22 16 26 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.07 2.94 5.41 -2.39 -0.01 2.93 16 28 H 0.04 1.75 7.41 -2.39 -0.02 1.73 16 29 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.07 3.22 8.09 -2.38 -0.02 3.20 16 31 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 32 H 0.07 1.97 8.14 -2.38 -0.02 1.96 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.09 1.94 8.12 -2.39 -0.02 1.92 16 35 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -60.31 274.56 2.11 -58.20 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 1.03 Total: 14.61 kcal Atomic # 6 Polarization: -46.80 SS G_CDS: 3.30 Total: -43.49 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -4.25 Total: -75.03 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -60.31 2.11 -58.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260997115.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.177 kcal (2) G-P(sol) polarization free energy of solvation -60.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds