Wall clock time and date at job start Mon Mar 30 2020 02:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46850 * 110.99832 * 2 1 4 4 C 1.53035 * 109.52102 * 174.16284 * 3 2 1 5 5 C 1.53121 * 109.27982 * 59.18131 * 4 3 2 6 6 C 1.53004 * 109.52440 * 182.44039 * 5 4 3 7 7 H 1.09000 * 115.54839 * 79.62169 * 6 5 4 8 8 C 1.53003 * 117.49758 * 293.95802 * 6 5 4 9 9 C 1.52995 * 59.99889 * 252.50995 * 8 6 5 10 10 H 1.09008 * 117.49559 * 252.51354 * 9 8 6 11 11 C 1.50698 * 117.50135 * 107.48790 * 9 8 6 12 12 H 1.07992 * 120.00529 * 296.31209 * 11 9 8 13 13 C 1.37879 * 119.99902 * 116.31120 * 11 9 8 14 14 N 1.31513 * 119.99995 * 180.02562 * 13 11 9 15 15 Si 1.86800 * 120.00144 * 0.02562 * 13 11 9 16 16 H 1.48505 * 109.47638 * 89.99580 * 15 13 11 17 17 H 1.48497 * 109.47522 * 209.99871 * 15 13 11 18 18 H 1.48508 * 109.46908 * 329.99688 * 15 13 11 19 19 C 1.53118 * 109.15880 * 302.34110 * 5 4 3 20 20 C 1.46842 * 110.99930 * 235.79401 * 2 1 3 21 21 H 1.09001 * 109.47205 * 184.21041 * 1 2 3 22 22 H 1.09005 * 109.47176 * 304.21027 * 1 2 3 23 23 H 1.09008 * 109.47363 * 64.20846 * 1 2 3 24 24 H 1.09005 * 109.46093 * 294.17556 * 3 2 1 25 25 H 1.08993 * 109.46424 * 54.14582 * 3 2 1 26 26 H 1.08994 * 109.50707 * 299.23549 * 4 3 2 27 27 H 1.09003 * 109.50257 * 179.11860 * 4 3 2 28 28 H 1.08995 * 109.52478 * 62.24686 * 5 4 3 29 29 H 1.09003 * 117.49645 * 359.97438 * 8 6 5 30 30 H 1.08999 * 117.49795 * 144.99422 * 8 6 5 31 31 H 0.97001 * 119.99658 * 180.02562 * 14 13 11 32 32 H 1.09001 * 109.50722 * 297.71720 * 19 5 4 33 33 H 1.08997 * 109.50382 * 177.59583 * 19 5 4 34 34 H 1.09005 * 109.46422 * 305.85342 * 20 2 1 35 35 H 1.09002 * 109.46808 * 65.83297 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3342 0.1467 5 6 4.1187 0.5371 -1.0145 6 6 5.6360 0.4450 -0.8407 7 1 5.9833 -0.3068 -0.1319 8 6 6.4389 1.7434 -0.9431 9 6 6.5055 0.7118 -2.0710 10 1 7.4251 0.1352 -2.1720 11 6 5.8018 1.0450 -3.3613 12 1 4.7289 1.1666 -3.3755 13 6 6.5279 1.1945 -4.5238 14 7 5.9139 1.4857 -5.6497 15 14 8.3838 0.9833 -4.4996 16 1 8.7239 -0.4380 -4.7635 17 1 8.9934 1.8409 -5.5475 18 1 8.9097 1.3792 -3.1683 19 6 3.5181 -0.8714 -1.0209 20 6 1.9952 -0.7707 -1.1338 21 1 -0.3634 -1.0249 0.0755 22 1 -0.3634 0.5778 0.8499 23 1 -0.3634 0.4472 -0.9253 24 1 1.7324 1.8609 -0.9376 25 1 1.5634 1.9257 0.8329 26 1 3.7813 0.8568 1.0905 27 1 3.9098 2.3513 0.1309 28 1 3.8886 1.0355 -1.9561 29 1 5.8861 2.6631 -1.1348 30 1 7.3143 1.8458 -0.3019 31 1 6.4248 1.5905 -6.4677 32 1 3.7813 -1.3836 -0.0954 33 1 3.9098 -1.4302 -1.8708 34 1 1.5633 -1.7715 -1.1243 35 1 1.7326 -0.2707 -2.0660 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260997117.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:34 Heat of formation + Delta-G solvation = 11.960574 kcal Electronic energy + Delta-G solvation = -14174.833171 eV Core-core repulsion = 11979.776285 eV Total energy + Delta-G solvation = -2195.056887 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.88482 -36.44538 -32.69392 -31.84242 -30.43892 -26.66507 -25.69211 -22.91770 -22.60554 -20.31225 -19.43637 -18.96706 -16.79962 -15.39131 -14.78651 -14.48214 -14.37146 -14.00461 -13.40621 -13.17155 -12.57948 -12.33043 -12.07947 -12.00057 -11.51518 -11.14588 -11.03915 -10.95964 -10.74958 -10.14375 -10.03182 -9.92563 -9.75006 -9.22941 -8.91865 -8.60518 -8.35163 -8.10992 -6.10169 -4.05069 3.29280 3.37654 3.43250 4.18014 4.42402 4.85824 5.20177 5.25051 5.33772 5.37577 5.58398 5.62658 5.73677 5.82182 5.89135 5.93916 6.03382 6.11256 6.18692 6.35714 6.40401 6.46348 6.51418 6.52763 6.71121 6.78733 6.88713 7.08671 7.18203 7.29397 7.34658 7.43872 7.77780 8.55164 8.95030 9.53292 11.01280 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.046031 B = 0.008175 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.142258 B = 3424.346712 C = 3679.780539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.106 4.106 5 C -0.055 4.055 6 C -0.163 4.163 7 H 0.078 0.922 8 C -0.212 4.212 9 C -0.012 4.012 10 H 0.061 0.939 11 C -0.484 4.484 12 H 0.082 0.918 13 C 0.071 3.929 14 N -0.899 5.899 15 Si 0.883 3.117 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.264 1.264 19 C -0.104 4.104 20 C 0.056 3.944 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.022 0.978 24 H 0.032 0.968 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.265 0.735 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.322 -2.400 9.954 12.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.072 4.072 4 C -0.144 4.144 5 C -0.073 4.073 6 C -0.182 4.182 7 H 0.096 0.904 8 C -0.250 4.250 9 C -0.031 4.031 10 H 0.079 0.921 11 C -0.521 4.521 12 H 0.100 0.900 13 C -0.131 4.131 14 N -0.536 5.536 15 Si 0.710 3.290 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.189 1.189 19 C -0.141 4.141 20 C -0.072 4.072 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.144 -2.586 10.165 12.156 hybrid contribution 0.692 0.355 -0.779 1.101 sum -5.452 -2.231 9.387 11.082 Atomic orbital electron populations 1.22331 0.88193 1.01715 1.00101 1.61974 1.06788 1.14211 1.43943 1.22123 0.96592 0.88630 0.99867 1.21592 0.92820 1.00492 0.99521 1.20727 0.92825 0.94984 0.98757 1.22107 0.92752 0.99263 1.04080 0.90419 1.23096 1.01217 0.93789 1.06867 1.20275 0.96220 0.96923 0.89656 0.92085 1.20622 0.95330 1.46670 0.89476 0.90047 1.25034 0.98550 0.94211 0.95274 1.69898 1.36161 1.48133 0.99421 0.86742 0.85993 0.78208 0.78035 1.20351 1.21549 1.18875 1.21531 0.92788 0.97992 1.01824 1.22126 0.96608 0.97319 0.91132 0.91731 0.91824 0.95935 0.94980 0.91575 0.92025 0.91806 0.89385 0.90037 0.91816 0.92572 0.92204 0.91053 0.91453 0.94765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.59 60.06 0.58 0.88 16 2 N -0.54 -8.01 4.91 -242.95 -1.19 -9.21 16 3 C 0.06 0.83 5.46 -3.83 -0.02 0.81 16 4 C -0.11 -1.75 5.25 -26.65 -0.14 -1.89 16 5 C -0.05 -1.04 2.15 -90.49 -0.19 -1.23 16 6 C -0.16 -3.33 5.07 -90.62 -0.46 -3.78 16 7 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 8 C -0.21 -4.50 9.59 -26.73 -0.26 -4.76 16 9 C -0.01 -0.28 4.89 -91.78 -0.45 -0.73 16 10 H 0.06 1.45 6.18 -51.92 -0.32 1.13 16 11 C -0.48 -13.40 9.24 -34.44 -0.32 -13.71 16 12 H 0.08 2.40 5.87 -52.49 -0.31 2.09 16 13 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 14 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 15 Si 0.88 21.57 27.16 -169.99 -4.62 16.95 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 18 H -0.26 -6.28 6.85 56.52 0.39 -5.89 16 19 C -0.10 -1.78 5.38 -26.65 -0.14 -1.92 16 20 C 0.06 0.87 5.46 -3.83 -0.02 0.85 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 23 H 0.02 0.27 8.14 -51.92 -0.42 -0.16 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 1.05 7.82 -51.93 -0.41 0.64 16 28 H 0.09 1.97 5.44 -51.93 -0.28 1.68 16 29 H 0.08 1.77 8.03 -51.93 -0.42 1.35 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 273.87 15.07 4.13 4.13 Total: -1.00 -28.91 273.87 -8.38 -37.30 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.95 Total: 0.71 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: -1.52 Total: -23.56 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.42 Total: -35.53 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.62 Total: 16.95 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.91 -8.38 -37.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260997117.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.256 kcal (2) G-P(sol) polarization free energy of solvation -28.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds