Wall clock time and date at job start Mon Mar 30 2020 02:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46850 * 110.99832 * 2 1 4 4 C 1.53035 * 109.52102 * 174.16284 * 3 2 1 5 5 C 1.53121 * 109.27982 * 59.18131 * 4 3 2 6 6 C 1.53004 * 109.52440 * 182.44039 * 5 4 3 7 7 H 1.09000 * 115.54839 * 79.62169 * 6 5 4 8 8 C 1.53003 * 117.49758 * 293.95802 * 6 5 4 9 9 C 1.52995 * 59.99889 * 252.50995 * 8 6 5 10 10 H 1.09008 * 117.49559 * 252.51354 * 9 8 6 11 11 C 1.50698 * 117.50135 * 107.48790 * 9 8 6 12 12 H 1.07992 * 120.00529 * 296.31209 * 11 9 8 13 13 C 1.37879 * 119.99902 * 116.31120 * 11 9 8 14 14 N 1.31513 * 119.99995 * 180.02562 * 13 11 9 15 15 Si 1.86800 * 120.00144 * 0.02562 * 13 11 9 16 16 H 1.48505 * 109.47638 * 89.99580 * 15 13 11 17 17 H 1.48497 * 109.47522 * 209.99871 * 15 13 11 18 18 H 1.48508 * 109.46908 * 329.99688 * 15 13 11 19 19 C 1.53118 * 109.15880 * 302.34110 * 5 4 3 20 20 C 1.46842 * 110.99930 * 235.79401 * 2 1 3 21 21 H 1.09001 * 109.47205 * 184.21041 * 1 2 3 22 22 H 1.09005 * 109.47176 * 304.21027 * 1 2 3 23 23 H 1.09008 * 109.47363 * 64.20846 * 1 2 3 24 24 H 1.09005 * 109.46093 * 294.17556 * 3 2 1 25 25 H 1.08993 * 109.46424 * 54.14582 * 3 2 1 26 26 H 1.08994 * 109.50707 * 299.23549 * 4 3 2 27 27 H 1.09003 * 109.50257 * 179.11860 * 4 3 2 28 28 H 1.08995 * 109.52478 * 62.24686 * 5 4 3 29 29 H 1.09003 * 117.49645 * 359.97438 * 8 6 5 30 30 H 1.08999 * 117.49795 * 144.99422 * 8 6 5 31 31 H 0.97001 * 119.99658 * 180.02562 * 14 13 11 32 32 H 1.09001 * 109.50722 * 297.71720 * 19 5 4 33 33 H 1.08997 * 109.50382 * 177.59583 * 19 5 4 34 34 H 1.09005 * 109.46422 * 305.85342 * 20 2 1 35 35 H 1.09002 * 109.46808 * 65.83297 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3342 0.1467 5 6 4.1187 0.5371 -1.0145 6 6 5.6360 0.4450 -0.8407 7 1 5.9833 -0.3068 -0.1319 8 6 6.4389 1.7434 -0.9431 9 6 6.5055 0.7118 -2.0710 10 1 7.4251 0.1352 -2.1720 11 6 5.8018 1.0450 -3.3613 12 1 4.7289 1.1666 -3.3755 13 6 6.5279 1.1945 -4.5238 14 7 5.9139 1.4857 -5.6497 15 14 8.3838 0.9833 -4.4996 16 1 8.7239 -0.4380 -4.7635 17 1 8.9934 1.8409 -5.5475 18 1 8.9097 1.3792 -3.1683 19 6 3.5181 -0.8714 -1.0209 20 6 1.9952 -0.7707 -1.1338 21 1 -0.3634 -1.0249 0.0755 22 1 -0.3634 0.5778 0.8499 23 1 -0.3634 0.4472 -0.9253 24 1 1.7324 1.8609 -0.9376 25 1 1.5634 1.9257 0.8329 26 1 3.7813 0.8568 1.0905 27 1 3.9098 2.3513 0.1309 28 1 3.8886 1.0355 -1.9561 29 1 5.8861 2.6631 -1.1348 30 1 7.3143 1.8458 -0.3019 31 1 6.4248 1.5905 -6.4677 32 1 3.7813 -1.3836 -0.0954 33 1 3.9098 -1.4302 -1.8708 34 1 1.5633 -1.7715 -1.1243 35 1 1.7326 -0.2707 -2.0660 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260997117.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:34 Heat of formation + Delta-G solvation = -5.880401 kcal Electronic energy + Delta-G solvation = -14175.606814 eV Core-core repulsion = 11979.776285 eV Total energy + Delta-G solvation = -2195.830529 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.27074 -38.02243 -34.53410 -33.52690 -31.73269 -28.22385 -27.43327 -24.23033 -23.91666 -22.03610 -20.93784 -20.71586 -18.71474 -16.77563 -16.36750 -15.97779 -15.87135 -15.37359 -15.09873 -14.52745 -14.37979 -13.84458 -13.38756 -13.24357 -13.03673 -12.93445 -12.57267 -12.51130 -12.06629 -11.90553 -11.66418 -11.49948 -11.41436 -10.99923 -10.84852 -10.43047 -10.21767 -9.30474 -8.27188 -6.25764 1.36398 1.38553 1.51570 2.38145 2.92115 3.03134 3.49667 3.90309 3.97976 4.09838 4.28592 4.40402 4.46429 4.51779 4.56734 4.65909 4.66897 4.75354 4.87511 4.91913 4.96193 4.97805 5.00630 5.06680 5.15938 5.25452 5.32582 5.45748 5.53807 5.70460 5.80269 6.11765 6.17937 6.40582 6.76488 7.34799 8.87826 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.046031 B = 0.008175 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.142258 B = 3424.346712 C = 3679.780539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.546 5.546 3 C 0.057 3.943 4 C -0.099 4.099 5 C -0.056 4.056 6 C -0.142 4.142 7 H 0.104 0.896 8 C -0.197 4.197 9 C -0.049 4.049 10 H 0.068 0.932 11 C -0.485 4.485 12 H 0.045 0.955 13 C 0.008 3.992 14 N -0.951 5.951 15 Si 0.951 3.049 16 H -0.268 1.268 17 H -0.289 1.289 18 H -0.248 1.248 19 C -0.100 4.100 20 C 0.059 3.941 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.017 0.983 24 H 0.013 0.987 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.265 0.735 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.808 -3.086 12.578 14.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.271 5.271 3 C -0.071 4.071 4 C -0.137 4.137 5 C -0.074 4.074 6 C -0.160 4.160 7 H 0.122 0.878 8 C -0.235 4.235 9 C -0.068 4.068 10 H 0.086 0.914 11 C -0.522 4.522 12 H 0.063 0.937 13 C -0.189 4.189 14 N -0.591 5.591 15 Si 0.775 3.225 16 H -0.194 1.194 17 H -0.215 1.215 18 H -0.172 1.172 19 C -0.137 4.137 20 C -0.069 4.069 21 H 0.098 0.902 22 H 0.100 0.900 23 H 0.036 0.964 24 H 0.032 0.968 25 H 0.110 0.890 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -5.640 -3.276 12.817 14.381 hybrid contribution 0.418 0.572 -1.558 1.712 sum -5.222 -2.703 11.259 12.702 Atomic orbital electron populations 1.22437 0.86245 1.03091 1.00677 1.62017 1.08566 1.13631 1.42879 1.22121 0.95781 0.89195 0.99995 1.21507 0.93746 0.99844 0.98577 1.20669 0.92617 0.96250 0.97903 1.22241 0.93088 0.99133 1.01579 0.87826 1.23063 1.02138 0.93339 1.04928 1.20223 0.97494 0.99848 0.89235 0.91450 1.20841 0.94104 1.45658 0.91623 0.93713 1.25933 1.03772 0.94329 0.94821 1.70049 1.38154 1.50598 1.00282 0.85657 0.79749 0.78490 0.78598 1.19368 1.21524 1.17188 1.21469 0.93939 0.96583 1.01747 1.22063 0.95647 0.98451 0.90696 0.90220 0.89979 0.96397 0.96842 0.88989 0.90599 0.92129 0.93796 0.91190 0.89036 0.92575 0.90489 0.92983 0.89346 0.97054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.59 127.69 1.22 1.72 16 2 N -0.55 -14.92 4.91 -922.57 -4.53 -19.45 16 3 C 0.06 1.62 5.46 86.32 0.47 2.09 16 4 C -0.10 -3.09 5.25 30.65 0.16 -2.93 16 5 C -0.06 -2.11 2.15 -10.71 -0.02 -2.13 16 6 C -0.14 -5.54 5.07 -10.79 -0.05 -5.60 16 7 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 8 C -0.20 -7.99 9.59 30.59 0.29 -7.70 16 9 C -0.05 -2.32 4.89 -11.54 -0.06 -2.38 16 10 H 0.07 3.08 6.18 -2.38 -0.01 3.07 16 11 C -0.49 -27.75 9.24 25.60 0.24 -27.51 16 12 H 0.04 2.83 5.87 -2.91 -0.02 2.81 16 13 C 0.01 0.48 5.47 84.66 0.46 0.94 16 14 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 15 Si 0.95 44.76 27.16 68.60 1.86 46.62 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 18 H -0.25 -10.93 6.85 99.48 0.68 -10.25 16 19 C -0.10 -3.35 5.38 30.65 0.16 -3.19 16 20 C 0.06 1.80 5.46 86.33 0.47 2.27 16 21 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.08 1.47 8.09 -2.38 -0.02 1.45 16 23 H 0.02 0.40 8.14 -2.38 -0.02 0.38 16 24 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 25 H 0.09 2.16 8.08 -2.39 -0.02 2.14 16 26 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.06 1.91 7.82 -2.39 -0.02 1.89 16 28 H 0.04 2.07 5.44 -2.39 -0.01 2.05 16 29 H 0.07 2.99 8.03 -2.39 -0.02 2.97 16 30 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 31 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 32 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.09 2.29 8.12 -2.38 -0.02 2.27 16 35 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -63.84 273.87 1.99 -61.84 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 1.01 Total: 14.78 kcal Atomic # 6 Polarization: -47.76 SS G_CDS: 3.35 Total: -44.41 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -4.23 Total: -78.84 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.86 Total: 46.62 kcal Total: -63.84 1.99 -61.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260997117.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.963 kcal (2) G-P(sol) polarization free energy of solvation -63.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds