Wall clock time and date at job start Mon Mar 30 2020 02:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.44186 * 111.00148 * 2 1 4 4 C 1.52712 * 106.06325 * 224.01104 * 3 2 1 5 5 C 1.46407 * 114.14199 * 270.16786 * 4 3 2 6 6 C 1.56177 * 107.94613 * 59.61134 * 5 4 3 7 7 C 1.52680 * 116.14772 * 77.67637 * 6 5 4 8 8 C 1.52879 * 115.76081 * 145.37642 * 6 5 4 9 9 H 1.08998 * 117.50779 * 145.86262 * 8 6 5 10 10 C 1.50704 * 117.51182 * 0.77649 * 8 6 5 11 11 H 1.07992 * 119.99907 * 0.02562 * 10 8 6 12 12 C 1.37881 * 119.99589 * 179.97438 * 10 8 6 13 13 N 1.31513 * 120.00360 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 119.99598 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46945 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47226 * 120.00166 * 14 12 10 17 17 H 1.48498 * 109.46855 * 240.00061 * 14 12 10 18 18 C 1.50447 * 114.90823 * 290.82835 * 6 5 4 19 19 C 1.48376 * 111.00412 * 125.22563 * 2 1 3 20 20 H 1.08994 * 109.47144 * 56.04997 * 1 2 3 21 21 H 1.09000 * 109.46809 * 176.04953 * 1 2 3 22 22 H 1.08995 * 109.47043 * 296.04441 * 1 2 3 23 23 H 1.09001 * 110.12351 * 343.14141 * 3 2 1 24 24 H 1.08994 * 110.12610 * 104.75490 * 3 2 1 25 25 H 1.09002 * 108.54660 * 31.36818 * 4 3 2 26 26 H 1.08996 * 108.54950 * 149.10750 * 4 3 2 27 27 H 1.09004 * 109.76302 * 179.22032 * 5 4 3 28 28 H 1.09006 * 109.76574 * 299.94185 * 5 4 3 29 29 H 1.08993 * 117.49576 * 213.53222 * 7 6 5 30 30 H 1.08996 * 117.49589 * 358.55096 * 7 6 5 31 31 H 0.96995 * 120.00299 * 180.02562 * 13 12 10 32 32 H 1.08997 * 108.34372 * 210.02106 * 18 6 5 33 33 H 1.08995 * 108.34668 * 327.25728 * 18 6 5 34 34 H 1.09004 * 108.97571 * 316.17346 * 19 2 1 35 35 H 1.08997 * 108.98066 * 74.88173 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9857 1.3461 0.0000 4 6 3.1225 1.3623 -1.0196 5 6 4.4342 1.0322 -0.4593 6 6 4.3483 -0.4013 0.1546 7 6 4.4003 -1.5618 -0.8362 8 6 5.6149 -1.2498 0.0409 9 1 5.8358 -1.9366 0.8579 10 6 6.8134 -0.6255 -0.6262 11 1 6.7567 0.3853 -1.0021 12 6 7.9827 -1.3447 -0.7557 13 7 8.0523 -2.5751 -0.2966 14 14 9.4681 -0.5712 -1.5833 15 1 9.1331 0.8114 -2.0094 16 1 10.6037 -0.5337 -0.6273 17 1 9.8478 -1.3766 -2.7717 18 6 3.4958 -0.5118 1.3893 19 6 2.0008 -0.7990 1.1315 20 1 -0.3633 0.5739 -0.8524 21 1 -0.3633 -1.0252 -0.0708 22 1 -0.3633 0.4512 0.9233 23 1 1.2057 2.0472 -0.2968 24 1 2.3635 1.6028 0.9896 25 1 2.8917 0.6454 -1.8076 26 1 3.1771 2.3568 -1.4622 27 1 5.1870 1.0512 -1.2474 28 1 4.6951 1.7516 0.3170 29 1 3.8224 -2.4543 -0.5965 30 1 4.4684 -1.3160 -1.8959 31 1 8.8749 -3.0809 -0.3874 32 1 3.8963 -1.3116 2.0122 33 1 3.5721 0.4235 1.9437 34 1 1.4336 -0.5605 2.0313 35 1 1.8769 -1.8583 0.9067 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261025535.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:29 Heat of formation + Delta-G solvation = 23.720310 kcal Electronic energy + Delta-G solvation = -14414.007858 eV Core-core repulsion = 12219.460911 eV Total energy + Delta-G solvation = -2194.546946 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.04910 -36.03527 -32.64362 -32.09944 -29.88780 -26.51134 -25.44504 -24.15597 -22.71475 -20.09588 -19.67423 -17.50746 -16.25121 -15.63780 -15.08286 -14.68729 -14.35318 -13.65051 -13.12372 -12.66475 -12.56496 -12.48497 -12.13147 -11.58226 -11.40603 -10.98532 -10.84075 -10.82557 -10.59360 -10.34438 -10.08834 -9.93354 -9.70213 -9.16540 -8.76718 -8.20533 -7.94716 -7.87458 -6.00737 -3.97668 3.31120 3.39235 3.43032 4.27981 4.44560 5.02388 5.23390 5.33264 5.41544 5.50834 5.59409 5.63831 5.71412 5.91716 5.93059 5.96419 6.00345 6.28269 6.30504 6.45840 6.59337 6.66327 6.71678 6.92675 7.02979 7.15553 7.16597 7.23806 7.39784 7.56350 7.60589 7.76598 7.98853 8.55578 9.03523 9.61234 11.10354 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.056031 B = 0.008274 C = 0.007668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.602417 B = 3383.096971 C = 3650.780580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.535 5.535 3 C 0.060 3.940 4 C -0.108 4.108 5 C -0.075 4.075 6 C -0.146 4.146 7 C -0.181 4.181 8 C 0.035 3.965 9 H 0.070 0.930 10 C -0.489 4.489 11 H 0.065 0.935 12 C 0.064 3.936 13 N -0.889 5.889 14 Si 0.891 3.109 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.072 4.072 19 C 0.064 3.936 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.017 0.983 23 H 0.055 0.945 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.260 0.740 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.024 0.976 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.312 5.552 1.575 12.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.259 5.259 3 C -0.068 4.068 4 C -0.146 4.146 5 C -0.112 4.112 6 C -0.147 4.147 7 C -0.219 4.219 8 C 0.017 3.983 9 H 0.088 0.912 10 C -0.526 4.526 11 H 0.083 0.917 12 C -0.138 4.138 13 N -0.527 5.527 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.109 4.109 19 C -0.063 4.063 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.035 0.965 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.021 5.184 1.172 12.235 hybrid contribution 0.410 0.604 0.290 0.786 sum -10.611 5.788 1.462 12.175 Atomic orbital electron populations 1.22428 0.88581 1.01649 0.99582 1.61699 1.06069 1.13700 1.44421 1.21686 0.97138 0.88846 0.99148 1.20417 0.95314 0.99912 0.98966 1.20441 0.96014 0.94813 0.99970 1.21254 1.04213 0.92011 0.97203 1.22812 1.06816 0.96365 0.95928 1.20081 0.86002 0.95422 0.96837 0.91179 1.20831 0.95234 0.99629 1.36911 0.91710 1.25039 0.98627 0.94827 0.95353 1.69981 1.27147 1.09621 1.45980 0.86545 0.82788 0.79486 0.79251 1.19650 1.21011 1.21012 1.20734 0.92173 1.00698 0.97340 1.22614 0.95512 0.98041 0.90099 0.91814 0.91911 0.96489 0.92651 0.93626 0.91116 0.94269 0.90471 0.93767 0.92337 0.91061 0.93046 0.92145 0.93308 0.95771 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.29 60.06 0.56 0.88 16 2 N -0.53 -8.20 4.23 -243.17 -1.03 -9.23 16 3 C 0.06 0.90 5.47 -5.42 -0.03 0.87 16 4 C -0.11 -1.81 5.17 -30.02 -0.16 -1.96 16 5 C -0.08 -1.47 4.80 -28.17 -0.14 -1.61 16 6 C -0.15 -3.08 1.57 -154.31 -0.24 -3.32 16 7 C -0.18 -4.19 9.36 -26.87 -0.25 -4.44 16 8 C 0.03 0.90 5.27 -91.81 -0.48 0.41 16 9 H 0.07 1.96 7.83 -51.93 -0.41 1.55 16 10 C -0.49 -13.52 8.57 -34.44 -0.30 -13.81 16 11 H 0.06 1.75 5.73 -52.49 -0.30 1.45 16 12 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 13 N -0.89 -26.30 13.13 55.43 0.73 -25.57 16 14 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 C -0.07 -1.30 4.87 -27.27 -0.13 -1.43 16 19 C 0.06 1.01 5.65 -2.27 -0.01 1.00 16 20 H 0.06 0.71 8.00 -51.93 -0.42 0.30 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.02 0.19 8.11 -51.93 -0.42 -0.23 16 23 H 0.06 0.72 7.52 -51.93 -0.39 0.33 16 24 H 0.05 0.69 6.18 -51.93 -0.32 0.37 16 25 H 0.07 1.29 7.74 -51.93 -0.40 0.89 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.67 5.85 -51.93 -0.30 1.36 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.06 1.11 7.89 -51.93 -0.41 0.70 16 33 H 0.05 0.84 6.92 -51.93 -0.36 0.48 16 34 H 0.02 0.34 7.97 -51.93 -0.41 -0.07 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 270.60 15.07 4.08 4.08 Total: -1.00 -28.73 270.60 -8.34 -37.06 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.82 Total: -1.00 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -1.28 Total: -21.73 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: -0.30 Total: -34.80 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.73 -8.34 -37.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025535.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.784 kcal (2) G-P(sol) polarization free energy of solvation -28.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds