Wall clock time and date at job start Mon Mar 30 2020 02:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.44186 * 111.00148 * 2 1 4 4 C 1.52712 * 106.06325 * 224.01104 * 3 2 1 5 5 C 1.46407 * 114.14199 * 270.16786 * 4 3 2 6 6 C 1.56177 * 107.94613 * 59.61134 * 5 4 3 7 7 C 1.52680 * 116.14772 * 77.67637 * 6 5 4 8 8 C 1.52879 * 115.76081 * 145.37642 * 6 5 4 9 9 H 1.08998 * 117.50779 * 145.86262 * 8 6 5 10 10 C 1.50704 * 117.51182 * 0.77649 * 8 6 5 11 11 H 1.07992 * 119.99907 * 0.02562 * 10 8 6 12 12 C 1.37881 * 119.99589 * 179.97438 * 10 8 6 13 13 N 1.31513 * 120.00360 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 119.99598 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46945 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47226 * 120.00166 * 14 12 10 17 17 H 1.48498 * 109.46855 * 240.00061 * 14 12 10 18 18 C 1.50447 * 114.90823 * 290.82835 * 6 5 4 19 19 C 1.48376 * 111.00412 * 125.22563 * 2 1 3 20 20 H 1.08994 * 109.47144 * 56.04997 * 1 2 3 21 21 H 1.09000 * 109.46809 * 176.04953 * 1 2 3 22 22 H 1.08995 * 109.47043 * 296.04441 * 1 2 3 23 23 H 1.09001 * 110.12351 * 343.14141 * 3 2 1 24 24 H 1.08994 * 110.12610 * 104.75490 * 3 2 1 25 25 H 1.09002 * 108.54660 * 31.36818 * 4 3 2 26 26 H 1.08996 * 108.54950 * 149.10750 * 4 3 2 27 27 H 1.09004 * 109.76302 * 179.22032 * 5 4 3 28 28 H 1.09006 * 109.76574 * 299.94185 * 5 4 3 29 29 H 1.08993 * 117.49576 * 213.53222 * 7 6 5 30 30 H 1.08996 * 117.49589 * 358.55096 * 7 6 5 31 31 H 0.96995 * 120.00299 * 180.02562 * 13 12 10 32 32 H 1.08997 * 108.34372 * 210.02106 * 18 6 5 33 33 H 1.08995 * 108.34668 * 327.25728 * 18 6 5 34 34 H 1.09004 * 108.97571 * 316.17346 * 19 2 1 35 35 H 1.08997 * 108.98066 * 74.88173 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9857 1.3461 0.0000 4 6 3.1225 1.3623 -1.0196 5 6 4.4342 1.0322 -0.4593 6 6 4.3483 -0.4013 0.1546 7 6 4.4003 -1.5618 -0.8362 8 6 5.6149 -1.2498 0.0409 9 1 5.8358 -1.9366 0.8579 10 6 6.8134 -0.6255 -0.6262 11 1 6.7567 0.3853 -1.0021 12 6 7.9827 -1.3447 -0.7557 13 7 8.0523 -2.5751 -0.2966 14 14 9.4681 -0.5712 -1.5833 15 1 9.1331 0.8114 -2.0094 16 1 10.6037 -0.5337 -0.6273 17 1 9.8478 -1.3766 -2.7717 18 6 3.4958 -0.5118 1.3893 19 6 2.0008 -0.7990 1.1315 20 1 -0.3633 0.5739 -0.8524 21 1 -0.3633 -1.0252 -0.0708 22 1 -0.3633 0.4512 0.9233 23 1 1.2057 2.0472 -0.2968 24 1 2.3635 1.6028 0.9896 25 1 2.8917 0.6454 -1.8076 26 1 3.1771 2.3568 -1.4622 27 1 5.1870 1.0512 -1.2474 28 1 4.6951 1.7516 0.3170 29 1 3.8224 -2.4543 -0.5965 30 1 4.4684 -1.3160 -1.8959 31 1 8.8749 -3.0809 -0.3874 32 1 3.8963 -1.3116 2.0122 33 1 3.5721 0.4235 1.9437 34 1 1.4336 -0.5605 2.0313 35 1 1.8769 -1.8583 0.9067 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261025535.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:29 Heat of formation + Delta-G solvation = 6.906842 kcal Electronic energy + Delta-G solvation = -14414.736944 eV Core-core repulsion = 12219.460911 eV Total energy + Delta-G solvation = -2195.276033 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.52076 -37.56160 -34.47693 -33.72523 -31.38435 -27.76287 -27.50621 -25.49546 -24.09600 -22.09382 -20.97707 -19.19154 -18.25626 -17.01873 -16.53600 -16.27062 -15.84148 -15.17717 -14.67104 -14.29513 -13.91770 -13.80737 -13.59011 -13.23186 -12.91945 -12.76103 -12.58601 -12.33269 -12.10869 -11.92505 -11.61238 -11.45823 -11.40678 -11.07013 -10.74270 -10.16579 -9.81069 -9.01352 -8.14742 -6.17458 1.40697 1.41734 1.54252 2.42647 3.04913 3.15827 3.56938 3.95857 4.17408 4.21361 4.26527 4.39194 4.45789 4.61219 4.63034 4.75019 4.84807 4.88452 4.94078 4.96111 5.06995 5.08111 5.20589 5.24206 5.37166 5.37941 5.53117 5.60813 5.70638 5.82611 5.90330 6.28260 6.44725 6.47895 6.89963 7.44126 8.97597 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.056031 B = 0.008274 C = 0.007668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.602417 B = 3383.096971 C = 3650.780580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.556 5.556 3 C 0.065 3.935 4 C -0.104 4.104 5 C -0.073 4.073 6 C -0.111 4.111 7 C -0.176 4.176 8 C -0.007 4.007 9 H 0.037 0.963 10 C -0.500 4.500 11 H 0.068 0.932 12 C 0.006 3.994 13 N -0.931 5.931 14 Si 0.960 3.040 15 H -0.262 1.262 16 H -0.279 1.279 17 H -0.281 1.281 18 C -0.075 4.075 19 C 0.072 3.928 20 H 0.075 0.925 21 H 0.065 0.935 22 H 0.031 0.969 23 H 0.082 0.918 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.261 0.739 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.843 7.352 1.523 14.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.281 5.281 3 C -0.064 4.064 4 C -0.143 4.143 5 C -0.110 4.110 6 C -0.112 4.112 7 C -0.214 4.214 8 C -0.026 4.026 9 H 0.055 0.945 10 C -0.537 4.537 11 H 0.086 0.914 12 C -0.192 4.192 13 N -0.570 5.570 14 Si 0.785 3.215 15 H -0.186 1.186 16 H -0.205 1.205 17 H -0.207 1.207 18 C -0.112 4.112 19 C -0.055 4.055 20 H 0.094 0.906 21 H 0.084 0.916 22 H 0.049 0.951 23 H 0.101 0.899 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.573 6.996 1.119 14.432 hybrid contribution 0.831 0.035 0.321 0.892 sum -11.741 7.031 1.441 13.761 Atomic orbital electron populations 1.22470 0.86385 1.02372 1.00836 1.61627 1.08187 1.13939 1.44311 1.21655 0.97028 0.89273 0.98412 1.20344 0.94296 1.00549 0.99064 1.20428 0.97366 0.93773 0.99447 1.21345 1.00524 0.92098 0.97201 1.22663 1.05223 0.97994 0.95476 1.19973 0.87527 0.97779 0.97283 0.94532 1.21177 0.96193 0.99759 1.36586 0.91433 1.25906 1.01790 0.95299 0.96199 1.70117 1.27998 1.11162 1.47760 0.85471 0.78994 0.78887 0.78129 1.18581 1.20467 1.20720 1.20757 0.93731 1.01146 0.95595 1.22468 0.93524 0.97939 0.91544 0.90608 0.91584 0.95052 0.89928 0.93573 0.92828 0.92102 0.93025 0.92847 0.91993 0.92181 0.93030 0.93132 0.91935 0.93344 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.29 127.69 1.19 1.75 16 2 N -0.56 -15.34 4.23 -923.26 -3.91 -19.25 16 3 C 0.06 1.69 5.47 86.71 0.47 2.17 16 4 C -0.10 -3.25 5.17 28.46 0.15 -3.10 16 5 C -0.07 -2.78 4.80 29.66 0.14 -2.63 16 6 C -0.11 -4.67 1.57 -52.05 -0.08 -4.75 16 7 C -0.18 -8.30 9.36 30.50 0.29 -8.02 16 8 C -0.01 -0.38 5.27 -11.57 -0.06 -0.44 16 9 H 0.04 2.16 7.83 -2.39 -0.02 2.14 16 10 C -0.50 -28.35 8.57 25.60 0.22 -28.13 16 11 H 0.07 3.70 5.73 -2.91 -0.02 3.69 16 12 C 0.01 0.34 5.46 84.66 0.46 0.80 16 13 N -0.93 -56.88 13.13 21.45 0.28 -56.60 16 14 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 15 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 C -0.07 -2.61 4.87 30.24 0.15 -2.46 16 19 C 0.07 2.10 5.65 86.49 0.49 2.59 16 20 H 0.08 1.39 8.00 -2.39 -0.02 1.37 16 21 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.03 0.57 8.11 -2.39 -0.02 0.55 16 23 H 0.08 1.75 7.52 -2.39 -0.02 1.73 16 24 H 0.05 1.22 6.18 -2.39 -0.01 1.20 16 25 H 0.05 1.86 7.74 -2.39 -0.02 1.85 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.05 2.22 5.85 -2.38 -0.01 2.21 16 28 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.26 15.00 8.31 -92.71 -0.77 14.22 16 32 H 0.05 1.86 7.89 -2.39 -0.02 1.84 16 33 H 0.06 2.02 6.92 -2.39 -0.02 2.00 16 34 H 0.05 1.19 7.97 -2.38 -0.02 1.17 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -62.92 270.60 2.85 -60.07 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 1.04 Total: 11.37 kcal Atomic # 6 Polarization: -45.65 SS G_CDS: 3.41 Total: -42.24 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -3.63 Total: -75.84 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -62.92 2.85 -60.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025535.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.981 kcal (2) G-P(sol) polarization free energy of solvation -62.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds