Wall clock time and date at job start Mon Mar 30 2020 02:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46851 * 111.00000 * 2 1 4 4 C 1.53037 * 109.51921 * 174.16036 * 3 2 1 5 5 C 1.53118 * 109.28155 * 59.18119 * 4 3 2 6 6 C 1.50705 * 109.51990 * 62.24788 * 5 4 3 7 7 H 1.08005 * 119.99767 * 232.96320 * 6 5 4 8 8 C 1.37872 * 120.00430 * 52.68565 * 6 5 4 9 9 N 1.31507 * 120.00344 * 196.67127 * 8 6 5 10 10 Si 1.86802 * 119.99621 * 16.66964 * 8 6 5 11 11 H 1.48501 * 109.47228 * 114.10380 * 10 8 6 12 12 H 1.48505 * 109.47293 * 234.10060 * 10 8 6 13 13 H 1.48496 * 109.47245 * 354.10063 * 10 8 6 14 14 C 1.52999 * 109.52417 * 182.37186 * 5 4 3 15 15 C 1.52999 * 117.50134 * 224.04108 * 14 5 4 16 16 C 1.52992 * 117.49704 * 155.38373 * 14 5 4 17 17 C 1.53118 * 109.20976 * 302.31296 * 5 4 3 18 18 C 1.46847 * 110.99759 * 235.79066 * 2 1 3 19 19 H 1.09004 * 109.47279 * 64.94966 * 1 2 3 20 20 H 1.08997 * 109.47199 * 184.94763 * 1 2 3 21 21 H 1.08999 * 109.47203 * 304.95006 * 1 2 3 22 22 H 1.08998 * 109.46020 * 54.14807 * 3 2 1 23 23 H 1.08992 * 109.45118 * 294.17224 * 3 2 1 24 24 H 1.09003 * 109.50571 * 299.23293 * 4 3 2 25 25 H 1.09003 * 109.49757 * 179.12097 * 4 3 2 26 26 H 0.97002 * 120.00132 * 180.02562 * 9 8 6 27 27 H 1.08998 * 115.54946 * 9.71438 * 14 5 4 28 28 H 1.09003 * 117.49493 * 0.02562 * 15 14 5 29 29 H 1.08992 * 117.50001 * 145.01872 * 15 14 5 30 30 H 1.09007 * 117.50132 * 214.98367 * 16 14 5 31 31 H 1.09004 * 117.50110 * 359.97438 * 16 14 5 32 32 H 1.09005 * 109.49862 * 177.62546 * 17 5 4 33 33 H 1.08996 * 109.50034 * 297.73935 * 17 5 4 34 34 H 1.08998 * 109.46390 * 305.85356 * 18 2 1 35 35 H 1.09002 * 109.46422 * 65.83706 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3341 0.1468 5 6 4.1188 0.5369 -1.0143 6 6 3.8007 1.2262 -2.3162 7 1 3.3323 0.6753 -3.1185 8 6 4.1022 2.5614 -2.4811 9 7 3.5474 3.2451 -3.4579 10 14 5.2991 3.3992 -1.3170 11 1 6.5189 3.7983 -2.0640 12 1 4.6594 4.6055 -0.7331 13 1 5.6704 2.4599 -0.2284 14 6 5.6363 0.4463 -0.8413 15 6 6.5039 0.6833 -2.0791 16 6 6.3543 -0.7289 -1.5078 17 6 3.5194 -0.8720 -1.0215 18 6 1.9952 -0.7708 -1.1338 19 1 -0.3634 0.4351 -0.9310 20 1 -0.3633 -1.0238 0.0886 21 1 -0.3633 0.5887 0.8423 22 1 1.5634 1.9257 0.8330 23 1 1.7324 1.8606 -0.9376 24 1 3.7814 0.8567 1.0907 25 1 3.9099 2.3512 0.1310 26 1 3.7598 4.1844 -3.5741 27 1 6.0217 0.7933 0.1174 28 1 5.9935 0.9042 -3.0166 29 1 7.4602 1.1859 -1.9346 30 1 7.2124 -1.1549 -0.9878 31 1 5.7455 -1.4377 -2.0692 32 1 3.9122 -1.4302 -1.8714 33 1 3.7827 -1.3841 -0.0960 34 1 1.5634 -1.7715 -1.1242 35 1 1.7326 -0.2707 -2.0660 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261110872.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:39 Heat of formation + Delta-G solvation = 42.733552 kcal Electronic energy + Delta-G solvation = -15106.694262 eV Core-core repulsion = 12912.971792 eV Total energy + Delta-G solvation = -2193.722470 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.98746 -36.24646 -32.75740 -31.47891 -29.99801 -26.67244 -24.58331 -22.79350 -22.26008 -21.12602 -19.56366 -18.50097 -15.70069 -15.45958 -14.85676 -14.25015 -14.02070 -13.88253 -13.40077 -13.05677 -12.42095 -12.13614 -11.66126 -11.48432 -11.14226 -11.04213 -10.70585 -10.58551 -10.32342 -9.92696 -9.83861 -9.66679 -9.59093 -9.08065 -8.76101 -8.42190 -8.19190 -7.53996 -6.08089 -4.00104 3.34405 3.46319 3.50147 4.49926 4.70638 4.84279 5.24074 5.59929 5.70192 5.79942 5.89772 5.95874 6.04897 6.12631 6.23379 6.24930 6.30060 6.34869 6.41354 6.51056 6.60452 6.72394 6.76688 6.90832 6.96621 7.04468 7.09623 7.26386 7.30476 7.47281 7.84315 7.87825 7.90086 8.56149 8.97440 9.60661 11.03415 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.029682 B = 0.016405 C = 0.013081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.113024 B = 1706.398748 C = 2140.014080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.544 5.544 3 C 0.065 3.935 4 C -0.098 4.098 5 C 0.069 3.931 6 C -0.501 4.501 7 H 0.070 0.930 8 C 0.082 3.918 9 N -0.894 5.894 10 Si 0.853 3.147 11 H -0.294 1.294 12 H -0.300 1.300 13 H -0.230 1.230 14 C -0.130 4.130 15 C -0.182 4.182 16 C -0.190 4.190 17 C -0.086 4.086 18 C 0.063 3.937 19 H 0.021 0.979 20 H 0.058 0.942 21 H 0.058 0.942 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.050 0.950 26 H 0.261 0.739 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.492 -5.446 5.912 8.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.063 4.063 4 C -0.136 4.136 5 C 0.068 3.932 6 C -0.538 4.538 7 H 0.088 0.912 8 C -0.120 4.120 9 N -0.531 5.531 10 Si 0.683 3.317 11 H -0.221 1.221 12 H -0.228 1.228 13 H -0.154 1.154 14 C -0.148 4.148 15 C -0.218 4.218 16 C -0.227 4.227 17 C -0.124 4.124 18 C -0.064 4.064 19 H 0.040 0.960 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.136 0.864 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.358 -5.505 6.242 8.330 hybrid contribution 0.449 1.186 -0.262 1.295 sum 0.092 -4.319 5.980 7.377 Atomic orbital electron populations 1.22273 0.89061 1.00926 0.99896 1.62020 1.06090 1.14893 1.43855 1.21984 0.95841 0.88171 1.00278 1.21836 0.94255 0.99403 0.98094 1.18142 0.87939 0.92352 0.94757 1.20742 1.40115 0.94619 0.98362 0.91239 1.24929 0.95339 0.96941 0.94807 1.70013 1.41523 1.08587 1.33001 0.87598 0.81829 0.79102 0.83209 1.22137 1.22765 1.15353 1.22853 0.96718 1.00442 0.94831 1.23093 0.99736 0.97960 1.01043 1.22924 1.02284 0.91978 1.05491 1.21482 0.93407 0.97859 0.99620 1.22035 0.96235 0.95895 0.92267 0.96007 0.92350 0.92325 0.93245 0.92658 0.93881 0.93172 0.92972 0.90068 0.86442 0.91512 0.91073 0.89184 0.92477 0.93556 0.93113 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.59 60.06 0.58 1.01 16 2 N -0.54 -10.34 4.91 -242.87 -1.19 -11.53 16 3 C 0.06 1.34 5.26 -3.83 -0.02 1.32 16 4 C -0.10 -2.12 4.18 -26.65 -0.11 -2.23 16 5 C 0.07 1.52 0.43 -155.54 -0.07 1.46 16 6 C -0.50 -12.96 5.00 -34.44 -0.17 -13.13 16 7 H 0.07 2.00 7.40 -52.48 -0.39 1.61 16 8 C 0.08 2.24 4.79 -17.82 -0.09 2.15 16 9 N -0.89 -26.42 13.96 55.43 0.77 -25.64 16 10 Si 0.85 20.97 22.11 -169.99 -3.76 17.21 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 13 H -0.23 -5.20 3.61 56.52 0.20 -4.99 16 14 C -0.13 -2.72 3.31 -90.62 -0.30 -3.02 16 15 C -0.18 -3.81 7.01 -26.70 -0.19 -4.00 16 16 C -0.19 -3.52 9.65 -26.70 -0.26 -3.78 16 17 C -0.09 -1.71 4.23 -26.58 -0.11 -1.82 16 18 C 0.06 1.23 5.26 -3.76 -0.02 1.21 16 19 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 20 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 21 H 0.06 0.84 8.08 -51.93 -0.42 0.43 16 22 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 23 H 0.06 1.32 7.31 -51.93 -0.38 0.94 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 1.14 3.69 -51.93 -0.19 0.95 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.08 1.68 6.81 -51.93 -0.35 1.33 16 28 H 0.12 2.77 6.25 -51.93 -0.32 2.45 16 29 H 0.07 1.32 8.13 -51.93 -0.42 0.90 16 30 H 0.07 1.17 8.14 -51.92 -0.42 0.74 16 31 H 0.09 1.65 6.35 -51.93 -0.33 1.32 16 32 H 0.06 1.11 6.46 -51.93 -0.34 0.78 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 35 H 0.05 1.02 6.94 -51.93 -0.36 0.66 16 LS Contribution 250.14 15.07 3.77 3.77 Total: -1.00 -27.93 250.14 -6.96 -34.88 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.79 Total: 2.15 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -0.76 Total: -20.84 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: -0.42 Total: -37.17 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -3.76 Total: 17.21 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.93 -6.96 -34.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110872.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.616 kcal (2) G-P(sol) polarization free energy of solvation -27.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds