Wall clock time and date at job start Mon Mar 30 2020 02:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46851 * 111.00000 * 2 1 4 4 C 1.53037 * 109.51921 * 174.16036 * 3 2 1 5 5 C 1.53118 * 109.28155 * 59.18119 * 4 3 2 6 6 C 1.50705 * 109.51990 * 62.24788 * 5 4 3 7 7 H 1.08005 * 119.99767 * 232.96320 * 6 5 4 8 8 C 1.37872 * 120.00430 * 52.68565 * 6 5 4 9 9 N 1.31507 * 120.00344 * 196.67127 * 8 6 5 10 10 Si 1.86802 * 119.99621 * 16.66964 * 8 6 5 11 11 H 1.48501 * 109.47228 * 114.10380 * 10 8 6 12 12 H 1.48505 * 109.47293 * 234.10060 * 10 8 6 13 13 H 1.48496 * 109.47245 * 354.10063 * 10 8 6 14 14 C 1.52999 * 109.52417 * 182.37186 * 5 4 3 15 15 C 1.52999 * 117.50134 * 224.04108 * 14 5 4 16 16 C 1.52992 * 117.49704 * 155.38373 * 14 5 4 17 17 C 1.53118 * 109.20976 * 302.31296 * 5 4 3 18 18 C 1.46847 * 110.99759 * 235.79066 * 2 1 3 19 19 H 1.09004 * 109.47279 * 64.94966 * 1 2 3 20 20 H 1.08997 * 109.47199 * 184.94763 * 1 2 3 21 21 H 1.08999 * 109.47203 * 304.95006 * 1 2 3 22 22 H 1.08998 * 109.46020 * 54.14807 * 3 2 1 23 23 H 1.08992 * 109.45118 * 294.17224 * 3 2 1 24 24 H 1.09003 * 109.50571 * 299.23293 * 4 3 2 25 25 H 1.09003 * 109.49757 * 179.12097 * 4 3 2 26 26 H 0.97002 * 120.00132 * 180.02562 * 9 8 6 27 27 H 1.08998 * 115.54946 * 9.71438 * 14 5 4 28 28 H 1.09003 * 117.49493 * 0.02562 * 15 14 5 29 29 H 1.08992 * 117.50001 * 145.01872 * 15 14 5 30 30 H 1.09007 * 117.50132 * 214.98367 * 16 14 5 31 31 H 1.09004 * 117.50110 * 359.97438 * 16 14 5 32 32 H 1.09005 * 109.49862 * 177.62546 * 17 5 4 33 33 H 1.08996 * 109.50034 * 297.73935 * 17 5 4 34 34 H 1.08998 * 109.46390 * 305.85356 * 18 2 1 35 35 H 1.09002 * 109.46422 * 65.83706 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3341 0.1468 5 6 4.1188 0.5369 -1.0143 6 6 3.8007 1.2262 -2.3162 7 1 3.3323 0.6753 -3.1185 8 6 4.1022 2.5614 -2.4811 9 7 3.5474 3.2451 -3.4579 10 14 5.2991 3.3992 -1.3170 11 1 6.5189 3.7983 -2.0640 12 1 4.6594 4.6055 -0.7331 13 1 5.6704 2.4599 -0.2284 14 6 5.6363 0.4463 -0.8413 15 6 6.5039 0.6833 -2.0791 16 6 6.3543 -0.7289 -1.5078 17 6 3.5194 -0.8720 -1.0215 18 6 1.9952 -0.7708 -1.1338 19 1 -0.3634 0.4351 -0.9310 20 1 -0.3633 -1.0238 0.0886 21 1 -0.3633 0.5887 0.8423 22 1 1.5634 1.9257 0.8330 23 1 1.7324 1.8606 -0.9376 24 1 3.7814 0.8567 1.0907 25 1 3.9099 2.3512 0.1310 26 1 3.7598 4.1844 -3.5741 27 1 6.0217 0.7933 0.1174 28 1 5.9935 0.9042 -3.0166 29 1 7.4602 1.1859 -1.9346 30 1 7.2124 -1.1549 -0.9878 31 1 5.7455 -1.4377 -2.0692 32 1 3.9122 -1.4302 -1.8714 33 1 3.7827 -1.3841 -0.0960 34 1 1.5634 -1.7715 -1.1242 35 1 1.7326 -0.2707 -2.0660 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261110872.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:39 Heat of formation + Delta-G solvation = 23.668230 kcal Electronic energy + Delta-G solvation = -15107.520997 eV Core-core repulsion = 12912.971792 eV Total energy + Delta-G solvation = -2194.549205 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.65731 -37.81416 -34.63241 -33.29432 -31.63717 -28.34359 -26.41744 -24.42170 -23.84524 -22.71004 -21.19746 -20.38219 -17.64245 -17.10933 -16.61323 -15.87862 -15.69560 -15.44813 -15.05749 -14.88661 -14.14434 -13.82229 -13.31816 -13.09791 -12.80197 -12.57410 -12.45500 -12.25529 -12.06368 -11.78920 -11.50449 -11.37341 -11.24332 -10.89613 -10.53748 -10.42052 -9.92592 -9.14521 -8.22617 -6.14561 1.35558 1.44813 1.51793 2.44697 3.15655 3.20631 3.23696 4.01016 4.21237 4.23502 4.41754 4.42309 4.53862 4.57177 4.64903 4.72004 4.76219 4.88392 4.94380 4.99061 5.01238 5.08549 5.12763 5.28097 5.33930 5.36417 5.42129 5.55824 5.63392 5.78991 5.89936 6.26509 6.35477 6.45237 6.86492 7.48129 8.93312 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.029682 B = 0.016405 C = 0.013081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.113024 B = 1706.398748 C = 2140.014080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.539 5.539 3 C 0.068 3.932 4 C -0.101 4.101 5 C 0.063 3.937 6 C -0.476 4.476 7 H 0.025 0.975 8 C 0.032 3.968 9 N -0.949 5.949 10 Si 0.900 3.100 11 H -0.303 1.303 12 H -0.312 1.312 13 H -0.190 1.190 14 C -0.144 4.144 15 C -0.200 4.200 16 C -0.158 4.158 17 C -0.083 4.083 18 C 0.065 3.935 19 H 0.007 0.993 20 H 0.083 0.917 21 H 0.076 0.924 22 H 0.071 0.929 23 H 0.010 0.990 24 H 0.068 0.932 25 H 0.037 0.963 26 H 0.257 0.743 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.377 -7.325 8.699 11.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.060 4.060 4 C -0.138 4.138 5 C 0.062 3.938 6 C -0.514 4.514 7 H 0.043 0.957 8 C -0.165 4.165 9 N -0.590 5.590 10 Si 0.729 3.271 11 H -0.232 1.232 12 H -0.240 1.240 13 H -0.112 1.112 14 C -0.163 4.163 15 C -0.237 4.237 16 C -0.194 4.194 17 C -0.120 4.120 18 C -0.063 4.063 19 H 0.026 0.974 20 H 0.102 0.898 21 H 0.095 0.905 22 H 0.089 0.911 23 H 0.029 0.971 24 H 0.087 0.913 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.115 0.885 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 0.512 -7.419 9.050 11.714 hybrid contribution 0.086 1.685 -1.200 2.070 sum 0.598 -5.734 7.850 9.740 Atomic orbital electron populations 1.22402 0.87071 1.02863 0.99973 1.62090 1.07932 1.13375 1.42970 1.21888 0.95977 0.89274 0.98848 1.21843 0.94539 0.98677 0.98775 1.18174 0.89589 0.93421 0.92612 1.20859 1.37511 0.94084 0.98902 0.95684 1.25561 0.96883 0.97831 0.96210 1.70150 1.44099 1.08786 1.35927 0.86881 0.79378 0.78319 0.82527 1.23173 1.24050 1.11186 1.22798 0.95386 1.02851 0.95225 1.22964 1.00166 1.00968 0.99560 1.22993 1.02415 0.90522 1.03490 1.21457 0.93430 0.96492 1.00659 1.22016 0.96485 0.97004 0.90784 0.97397 0.89798 0.90497 0.91072 0.97141 0.91322 0.94483 0.93431 0.88524 0.90108 0.90083 0.87588 0.89129 0.92536 0.91321 0.90186 0.97426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.59 127.69 1.23 1.96 16 2 N -0.54 -19.28 4.91 -922.31 -4.53 -23.81 16 3 C 0.07 2.75 5.26 86.32 0.45 3.21 16 4 C -0.10 -4.11 4.18 30.65 0.13 -3.99 16 5 C 0.06 2.68 0.43 -52.85 -0.02 2.66 16 6 C -0.48 -25.30 5.00 25.60 0.13 -25.18 16 7 H 0.02 1.52 7.40 -2.91 -0.02 1.50 16 8 C 0.03 1.79 4.79 84.65 0.41 2.20 16 9 N -0.95 -59.12 13.96 21.44 0.30 -58.82 16 10 Si 0.90 43.56 22.11 68.60 1.52 45.08 16 11 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 12 H -0.31 -15.58 7.11 99.48 0.71 -14.88 16 13 H -0.19 -7.93 3.61 99.48 0.36 -7.57 16 14 C -0.14 -5.58 3.31 -10.80 -0.04 -5.61 16 15 C -0.20 -8.02 7.01 30.62 0.21 -7.80 16 16 C -0.16 -5.24 9.65 30.61 0.30 -4.94 16 17 C -0.08 -3.10 4.23 30.69 0.13 -2.97 16 18 C 0.07 2.43 5.26 86.37 0.45 2.88 16 19 H 0.01 0.24 8.14 -2.38 -0.02 0.22 16 20 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 21 H 0.08 1.99 8.08 -2.39 -0.02 1.97 16 22 H 0.07 2.54 8.08 -2.39 -0.02 2.52 16 23 H 0.01 0.50 7.31 -2.39 -0.02 0.49 16 24 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.04 1.60 3.69 -2.39 -0.01 1.59 16 26 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 27 H 0.10 3.50 6.81 -2.39 -0.02 3.49 16 28 H 0.08 3.86 6.25 -2.39 -0.01 3.85 16 29 H 0.08 3.00 8.13 -2.39 -0.02 2.98 16 30 H 0.11 2.86 8.14 -2.38 -0.02 2.85 16 31 H 0.09 3.02 6.35 -2.38 -0.02 3.00 16 32 H 0.06 2.10 6.46 -2.38 -0.02 2.09 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.08 2.52 8.12 -2.39 -0.02 2.50 16 35 H 0.01 0.33 6.94 -2.39 -0.02 0.32 16 Total: -1.00 -62.55 250.14 1.36 -61.19 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.70 Total: 13.94 kcal Atomic # 6 Polarization: -40.95 SS G_CDS: 3.38 Total: -37.58 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -4.23 Total: -82.63 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.52 Total: 45.08 kcal Total: -62.55 1.36 -61.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110872.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.855 kcal (2) G-P(sol) polarization free energy of solvation -62.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds