Wall clock time and date at job start Mon Mar 30 2020 02:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46843 * 111.00118 * 2 1 4 4 C 1.53037 * 109.52627 * 174.15452 * 3 2 1 5 5 C 1.53117 * 109.27311 * 59.17925 * 4 3 2 6 6 C 1.53117 * 109.16497 * 302.34820 * 5 4 3 7 7 C 1.50704 * 109.50173 * 297.71322 * 6 5 4 8 8 H 1.08002 * 120.00172 * 114.61704 * 7 6 5 9 9 C 1.37878 * 120.00114 * 294.62609 * 7 6 5 10 10 N 1.31511 * 119.99853 * 4.97741 * 9 7 6 11 11 Si 1.86799 * 120.00174 * 184.97859 * 9 7 6 12 12 H 1.48497 * 109.47056 * 59.99554 * 11 9 7 13 13 H 1.48499 * 109.47464 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47018 * 300.00018 * 11 9 7 15 15 C 1.53000 * 109.50707 * 177.59853 * 6 5 4 16 16 C 1.52998 * 117.49665 * 248.81692 * 15 6 5 17 17 C 1.52999 * 60.00030 * 252.50620 * 16 15 6 18 18 C 1.46842 * 111.00199 * 235.78918 * 2 1 3 19 19 H 1.09007 * 109.46714 * 56.04703 * 1 2 3 20 20 H 1.09001 * 109.47139 * 176.04243 * 1 2 3 21 21 H 1.08999 * 109.47750 * 296.05115 * 1 2 3 22 22 H 1.09001 * 109.46512 * 294.17672 * 3 2 1 23 23 H 1.09007 * 109.46103 * 54.14186 * 3 2 1 24 24 H 1.08998 * 109.50572 * 179.11776 * 4 3 2 25 25 H 1.08999 * 109.50309 * 299.24262 * 4 3 2 26 26 H 1.09007 * 109.52128 * 182.44080 * 5 4 3 27 27 H 1.09000 * 109.52720 * 62.25171 * 5 4 3 28 28 H 0.97001 * 120.00236 * 180.02562 * 10 9 7 29 29 H 1.08999 * 115.54765 * 34.52542 * 15 6 5 30 30 H 1.08996 * 117.49723 * 0.02562 * 16 15 6 31 31 H 1.09003 * 117.49766 * 145.01683 * 16 15 6 32 32 H 1.08994 * 117.50357 * 252.50724 * 17 16 15 33 33 H 1.09003 * 117.51349 * 107.48003 * 17 16 15 34 34 H 1.09002 * 109.45893 * 305.85671 * 18 2 1 35 35 H 1.09000 * 109.46410 * 65.82403 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1469 5 6 4.1188 0.5369 -1.0142 6 6 3.5181 -0.8715 -1.0207 7 6 3.8820 -1.5796 0.2589 8 1 3.1106 -1.8491 0.9651 9 6 5.1997 -1.8832 0.5281 10 7 6.1487 -1.4694 -0.2828 11 14 5.6370 -2.8822 2.0447 12 1 4.9708 -4.2075 1.9735 13 1 7.1087 -3.0701 2.1064 14 1 5.1789 -2.1628 3.2604 15 6 4.0681 -1.6559 -2.2136 16 6 3.0956 -1.9949 -3.3451 17 6 3.5809 -3.0945 -2.3984 18 6 1.9953 -0.7708 -1.1337 19 1 -0.3633 0.5740 -0.8525 20 1 -0.3633 -1.0252 -0.0709 21 1 -0.3634 0.4513 0.9232 22 1 1.7325 1.8608 -0.9376 23 1 1.5633 1.9257 0.8330 24 1 3.9099 2.3512 0.1311 25 1 3.7813 0.8567 1.0908 26 1 5.1998 0.4714 -0.8902 27 1 3.8888 1.0353 -1.9559 28 1 7.0758 -1.6832 -0.0936 29 1 5.1002 -1.4352 -2.4858 30 1 2.0641 -1.6587 -3.2398 31 1 3.4878 -1.9971 -4.3621 32 1 4.2924 -3.8201 -2.7925 33 1 2.8689 -3.4822 -1.6698 34 1 1.5634 -1.7715 -1.1241 35 1 1.7325 -0.2709 -2.0660 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261118926.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:42 Heat of formation + Delta-G solvation = 12.844616 kcal Electronic energy + Delta-G solvation = -15008.293456 eV Core-core repulsion = 12813.274905 eV Total energy + Delta-G solvation = -2195.018552 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.42804 -37.38515 -34.84019 -33.16917 -31.03027 -27.40040 -26.86714 -24.39987 -23.37090 -22.88288 -21.03873 -20.00592 -17.50528 -16.87396 -16.58422 -15.75396 -15.43545 -15.26539 -14.71670 -14.46699 -14.02605 -13.50928 -13.21094 -12.95723 -12.76383 -12.54129 -12.48138 -12.37654 -12.07044 -11.71334 -11.48232 -11.38115 -11.21455 -10.59834 -10.54643 -10.14397 -10.00019 -8.90849 -7.84589 -5.89277 1.46288 1.48088 1.53494 2.56827 3.27052 3.35408 3.50280 4.17066 4.29764 4.36819 4.43281 4.55056 4.56906 4.63692 4.73108 4.78693 4.83663 4.92680 4.94847 5.05434 5.05484 5.17924 5.20978 5.27071 5.49882 5.62170 5.70880 5.81919 5.85571 6.01425 6.28760 6.47076 6.52597 6.71937 7.13922 7.72904 9.17569 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.025498 B = 0.015315 C = 0.012528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.857106 B = 1827.775220 C = 2234.514422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.552 5.552 3 C 0.070 3.930 4 C -0.101 4.101 5 C -0.100 4.100 6 C 0.097 3.903 7 C -0.470 4.470 8 H 0.044 0.956 9 C 0.027 3.973 10 N -0.909 5.909 11 Si 0.926 3.074 12 H -0.280 1.280 13 H -0.294 1.294 14 H -0.281 1.281 15 C -0.103 4.103 16 C -0.195 4.195 17 C -0.174 4.174 18 C 0.085 3.915 19 H 0.025 0.975 20 H 0.063 0.937 21 H 0.074 0.926 22 H 0.026 0.974 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.020 0.980 28 H 0.250 0.750 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.758 3.081 -2.304 8.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.276 5.276 3 C -0.058 4.058 4 C -0.138 4.138 5 C -0.138 4.138 6 C 0.096 3.904 7 C -0.508 4.508 8 H 0.063 0.937 9 C -0.171 4.171 10 N -0.549 5.549 11 Si 0.755 3.245 12 H -0.206 1.206 13 H -0.220 1.220 14 H -0.207 1.207 15 C -0.122 4.122 16 C -0.232 4.232 17 C -0.211 4.211 18 C -0.042 4.042 19 H 0.044 0.956 20 H 0.082 0.918 21 H 0.093 0.907 22 H 0.044 0.956 23 H 0.096 0.904 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -7.418 2.844 -1.879 8.163 hybrid contribution 0.495 -0.400 0.144 0.653 sum -6.923 2.444 -1.735 7.544 Atomic orbital electron populations 1.22371 0.87049 1.01674 1.00875 1.61720 1.07458 1.13821 1.44629 1.21980 0.95534 0.88770 0.99525 1.21383 0.94541 0.98271 0.99649 1.21475 1.01499 0.96208 0.94646 1.17725 0.89140 0.91585 0.91936 1.21006 0.91473 1.34815 1.03527 0.93728 1.25331 0.96913 0.96983 0.97865 1.69996 0.99511 1.46995 1.38420 0.86125 0.76270 0.80026 0.82103 1.20606 1.21970 1.20680 1.22138 0.96982 0.96842 0.96240 1.23181 1.00141 1.04725 0.95174 1.22543 1.03522 0.92733 1.02335 1.22104 0.97081 0.95854 0.89168 0.95599 0.91786 0.90719 0.95589 0.90412 0.92357 0.93304 0.92342 0.96106 0.94017 0.90616 0.88756 0.89206 0.90774 0.90365 0.92912 0.96568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.62 127.69 1.23 2.06 16 2 N -0.55 -20.89 4.42 -922.60 -4.08 -24.97 16 3 C 0.07 2.46 5.46 86.33 0.47 2.93 16 4 C -0.10 -4.11 5.84 30.65 0.18 -3.93 16 5 C -0.10 -4.60 4.63 30.67 0.14 -4.46 16 6 C 0.10 4.49 0.36 -52.88 -0.02 4.47 16 7 C -0.47 -24.59 6.21 25.60 0.16 -24.43 16 8 H 0.04 2.44 7.63 -2.91 -0.02 2.42 16 9 C 0.03 1.44 5.13 84.66 0.43 1.88 16 10 N -0.91 -50.36 10.02 21.45 0.21 -50.15 16 11 Si 0.93 44.17 29.54 68.60 2.03 46.19 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 14 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 15 C -0.10 -4.69 4.09 -10.79 -0.04 -4.74 16 16 C -0.20 -7.26 9.57 30.59 0.29 -6.97 16 17 C -0.17 -7.27 9.53 30.59 0.29 -6.98 16 18 C 0.09 3.46 2.73 86.33 0.24 3.70 16 19 H 0.03 0.68 8.14 -2.38 -0.02 0.67 16 20 H 0.06 1.81 8.02 -2.39 -0.02 1.79 16 21 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.08 2.40 8.12 -2.38 -0.02 2.38 16 24 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.05 2.27 7.35 -2.39 -0.02 2.25 16 26 H 0.06 3.06 6.28 -2.38 -0.01 3.04 16 27 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 29 H 0.08 3.89 7.34 -2.39 -0.02 3.87 16 30 H 0.09 3.28 5.84 -2.39 -0.01 3.26 16 31 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 32 H 0.07 2.98 8.14 -2.39 -0.02 2.97 16 33 H 0.08 3.34 7.62 -2.39 -0.02 3.33 16 34 H 0.05 2.17 7.04 -2.39 -0.02 2.15 16 35 H 0.02 0.63 6.91 -2.39 -0.02 0.61 16 Total: -1.00 -56.08 265.93 2.57 -53.51 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 1.04 Total: 11.89 kcal Atomic # 6 Polarization: -39.84 SS G_CDS: 3.37 Total: -36.47 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -3.87 Total: -75.12 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -56.08 2.57 -53.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118926.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.356 kcal (2) G-P(sol) polarization free energy of solvation -56.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds