Wall clock time and date at job start Mon Mar 30 2020 02:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00012 * 2 1 4 4 C 1.53039 * 109.52131 * 185.83809 * 3 2 1 5 5 C 1.53126 * 109.27775 * 300.82152 * 4 3 2 6 6 C 1.53099 * 109.15554 * 57.65228 * 5 4 3 7 7 C 1.50696 * 109.50636 * 62.28921 * 6 5 4 8 8 H 1.08001 * 120.00234 * 235.71142 * 7 6 5 9 9 C 1.37880 * 119.99766 * 55.70838 * 7 6 5 10 10 N 1.31513 * 120.00014 * 2.43262 * 9 7 6 11 11 Si 1.86804 * 119.99954 * 182.42445 * 9 7 6 12 12 H 1.48508 * 109.47002 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46791 * 120.00101 * 11 9 7 14 14 H 1.48493 * 109.47524 * 240.00494 * 11 9 7 15 15 C 1.53001 * 109.48576 * 182.40257 * 6 5 4 16 16 C 1.53005 * 117.49255 * 241.12510 * 15 6 5 17 17 C 1.53002 * 60.00120 * 252.51239 * 16 15 6 18 18 C 1.46852 * 110.99351 * 124.20605 * 2 1 3 19 19 H 1.09004 * 109.47194 * 295.79679 * 1 2 3 20 20 H 1.09000 * 109.46763 * 55.78756 * 1 2 3 21 21 H 1.09000 * 109.47583 * 175.79049 * 1 2 3 22 22 H 1.08993 * 109.46162 * 305.85037 * 3 2 1 23 23 H 1.09003 * 109.46340 * 65.83445 * 3 2 1 24 24 H 1.08994 * 109.50434 * 60.75401 * 4 3 2 25 25 H 1.08997 * 109.50582 * 180.87787 * 4 3 2 26 26 H 1.08995 * 109.52368 * 177.56022 * 5 4 3 27 27 H 1.09007 * 109.52042 * 297.74733 * 5 4 3 28 28 H 0.97003 * 119.99559 * 179.97438 * 10 9 7 29 29 H 1.08994 * 115.55156 * 26.83294 * 15 6 5 30 30 H 1.08991 * 117.50270 * 0.02562 * 16 15 6 31 31 H 1.09002 * 117.49471 * 145.02235 * 16 15 6 32 32 H 1.09003 * 117.50180 * 252.51646 * 17 16 15 33 33 H 1.09000 * 117.49734 * 107.48899 * 17 16 15 34 34 H 1.08992 * 109.46332 * 294.17460 * 18 2 1 35 35 H 1.09003 * 109.46460 * 54.15791 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1467 5 6 4.1188 0.5368 1.0145 6 6 3.5180 -0.8713 1.0208 7 6 3.8819 -1.5794 -0.2587 8 1 3.1061 -1.9873 -0.8896 9 6 5.2054 -1.7065 -0.6238 10 7 6.1524 -1.2522 0.1675 11 14 5.6533 -2.5242 -2.2426 12 1 4.4139 -2.9452 -2.9441 13 1 6.4005 -1.5628 -3.0926 14 1 6.5013 -3.7142 -1.9782 15 6 4.0681 -1.6555 2.2139 16 6 4.8674 -2.9258 1.9163 17 6 3.4565 -3.0287 2.4992 18 6 1.9951 -0.7708 1.1339 19 1 -0.3634 0.4472 0.9253 20 1 -0.3633 0.5778 -0.8499 21 1 -0.3634 -1.0249 -0.0754 22 1 1.5635 1.9256 -0.8330 23 1 1.7326 1.8608 0.9377 24 1 3.7814 0.8566 -1.0905 25 1 3.9100 2.3511 -0.1310 26 1 5.1997 0.4712 0.8907 27 1 3.8887 1.0354 1.9561 28 1 7.0835 -1.3420 -0.0893 29 1 4.3773 -1.0547 3.0691 30 1 5.0017 -3.2025 0.8707 31 1 5.7028 -3.1608 2.5759 32 1 3.3637 -3.3313 3.5423 33 1 2.6623 -3.3733 1.8370 34 1 1.7323 -0.2708 2.0660 35 1 1.5634 -1.7716 1.1243 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261118927.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:45 Heat of formation + Delta-G solvation = 33.673088 kcal Electronic energy + Delta-G solvation = -15085.978257 eV Core-core repulsion = 12891.862895 eV Total energy + Delta-G solvation = -2194.115361 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.62963 -35.84797 -32.70622 -31.35148 -29.52213 -25.86785 -24.92575 -22.59312 -21.87952 -20.67742 -19.15167 -18.39868 -15.52851 -15.16507 -14.54061 -14.16557 -13.94661 -13.50629 -13.14705 -12.72566 -12.18250 -11.85694 -11.54241 -11.34873 -11.11861 -10.93571 -10.58959 -10.46902 -10.13572 -9.92914 -9.56646 -9.47215 -9.32442 -8.61096 -8.48875 -8.34110 -7.99038 -7.39900 -5.80159 -3.84747 3.36068 3.45645 3.51249 4.53502 4.78248 5.28874 5.43357 5.70823 5.83398 5.93574 6.04653 6.12934 6.26072 6.27377 6.37622 6.42735 6.45618 6.54548 6.67892 6.75802 6.86460 6.94030 7.03812 7.15006 7.32923 7.43618 7.56367 7.65296 7.88837 7.98513 8.02000 8.11209 8.30943 8.68199 9.16151 9.73963 11.20093 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.026786 B = 0.015557 C = 0.012892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.052331 B = 1799.354283 C = 2171.346525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.525 5.525 3 C 0.065 3.935 4 C -0.102 4.102 5 C -0.108 4.108 6 C 0.101 3.899 7 C -0.469 4.469 8 H 0.059 0.941 9 C 0.062 3.938 10 N -0.880 5.880 11 Si 0.876 3.124 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.288 1.288 15 C -0.104 4.104 16 C -0.127 4.127 17 C -0.217 4.217 18 C 0.079 3.921 19 H 0.010 0.990 20 H 0.056 0.944 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.013 0.987 24 H 0.077 0.923 25 H 0.036 0.964 26 H 0.103 0.897 27 H 0.009 0.991 28 H 0.254 0.746 29 H 0.064 0.936 30 H 0.115 0.885 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.003 0.997 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.564 1.982 1.516 6.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.249 5.249 3 C -0.063 4.063 4 C -0.140 4.140 5 C -0.145 4.145 6 C 0.101 3.899 7 C -0.508 4.508 8 H 0.077 0.923 9 C -0.138 4.138 10 N -0.520 5.520 11 Si 0.705 3.295 12 H -0.199 1.199 13 H -0.214 1.214 14 H -0.214 1.214 15 C -0.123 4.123 16 C -0.163 4.163 17 C -0.254 4.254 18 C -0.048 4.048 19 H 0.029 0.971 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.031 0.969 24 H 0.096 0.904 25 H 0.055 0.945 26 H 0.121 0.879 27 H 0.027 0.973 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.021 0.979 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.212 1.769 1.083 5.609 hybrid contribution 0.013 0.023 -0.032 0.041 sum -5.199 1.792 1.051 5.599 Atomic orbital electron populations 1.22327 0.89682 1.01215 0.98961 1.61810 1.04906 1.13234 1.44946 1.22024 0.97454 0.88905 0.97914 1.21443 0.92440 0.97821 1.02288 1.21634 1.04627 0.95160 0.93124 1.17735 0.87331 0.92084 0.92772 1.20982 0.91376 1.33846 1.04604 0.92267 1.24831 0.96777 0.96249 0.95947 1.69945 0.99441 1.46832 1.35745 0.86776 0.78373 0.79204 0.85130 1.19895 1.21371 1.21437 1.22076 1.02872 0.88837 0.98557 1.22789 0.89978 1.01560 1.02012 1.22906 0.99261 1.04441 0.98761 1.22171 0.98790 0.95792 0.88082 0.97108 0.92473 0.92105 0.92718 0.96869 0.90398 0.94497 0.87924 0.97266 0.93565 0.91761 0.86656 0.92693 0.92046 0.90052 0.97883 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.59 60.07 0.58 1.02 16 2 N -0.53 -10.64 4.51 -242.95 -1.10 -11.74 16 3 C 0.07 1.25 5.46 -3.83 -0.02 1.23 16 4 C -0.10 -2.17 5.84 -26.65 -0.16 -2.33 16 5 C -0.11 -2.51 4.50 -26.62 -0.12 -2.62 16 6 C 0.10 2.38 0.36 -155.59 -0.06 2.32 16 7 C -0.47 -12.01 5.42 -34.44 -0.19 -12.20 16 8 H 0.06 1.61 7.75 -52.49 -0.41 1.20 16 9 C 0.06 1.60 3.22 -17.82 -0.06 1.54 16 10 N -0.88 -23.23 9.16 55.43 0.51 -22.72 16 11 Si 0.88 20.83 29.54 -169.99 -5.02 15.81 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 C -0.10 -2.40 4.81 -90.61 -0.44 -2.84 16 16 C -0.13 -2.94 8.15 -26.73 -0.22 -3.16 16 17 C -0.22 -4.53 9.60 -26.73 -0.26 -4.79 16 18 C 0.08 1.69 3.87 -3.83 -0.01 1.68 16 19 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 20 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 21 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.08 1.84 7.35 -51.93 -0.38 1.45 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.10 2.66 5.77 -51.93 -0.30 2.36 16 27 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 29 H 0.06 1.48 8.05 -51.93 -0.42 1.06 16 30 H 0.12 2.94 4.98 -51.93 -0.26 2.68 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.71 7.16 -51.93 -0.37 1.34 16 34 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 35 H 0.06 1.28 6.89 -51.93 -0.36 0.92 16 LS Contribution 262.95 15.07 3.96 3.96 Total: -1.00 -26.01 262.95 -8.45 -34.46 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.85 Total: 0.38 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -0.95 Total: -20.15 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: -0.59 Total: -34.46 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -26.01 -8.45 -34.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118927.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.131 kcal (2) G-P(sol) polarization free energy of solvation -26.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds