Wall clock time and date at job start Mon Mar 30 2020 03:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46894 * 111.00307 * 2 1 4 4 C 1.53000 * 117.49770 * 7.57116 * 3 2 1 5 5 C 1.53001 * 60.00241 * 252.51055 * 4 3 2 6 6 C 1.46910 * 110.99784 * 123.95131 * 2 1 3 7 7 H 1.09001 * 110.53901 * 296.11988 * 6 2 1 8 8 C 1.54967 * 110.52884 * 58.74708 * 6 2 1 9 9 C 1.54884 * 102.77743 * 156.56974 * 8 6 2 10 10 C 1.54267 * 104.19605 * 322.08139 * 9 8 6 11 11 H 1.08998 * 110.07594 * 264.30550 * 10 9 8 12 12 C 1.50698 * 110.03265 * 142.89212 * 10 9 8 13 13 H 1.07998 * 120.00387 * 242.83031 * 12 10 9 14 14 C 1.37874 * 119.99846 * 62.84051 * 12 10 9 15 15 N 1.31519 * 119.99908 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00159 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47532 * 89.99747 * 16 14 12 18 18 H 1.48509 * 109.47291 * 209.99725 * 16 14 12 19 19 H 1.48497 * 109.47282 * 329.99352 * 16 14 12 20 20 C 1.53876 * 106.59687 * 23.61242 * 10 9 8 21 21 H 1.09000 * 109.47431 * 293.09757 * 1 2 3 22 22 H 1.09004 * 109.46608 * 53.09857 * 1 2 3 23 23 H 1.09000 * 109.47250 * 173.09775 * 1 2 3 24 24 H 1.09001 * 115.55376 * 153.28321 * 3 2 1 25 25 H 1.08998 * 117.50061 * 0.02562 * 4 3 2 26 26 H 1.09003 * 117.49507 * 145.02462 * 4 3 2 27 27 H 1.09002 * 117.50197 * 252.51488 * 5 4 3 28 28 H 1.08997 * 117.49637 * 107.48586 * 5 4 3 29 29 H 1.08995 * 110.72017 * 38.25155 * 8 6 2 30 30 H 1.09007 * 110.92063 * 274.97428 * 8 6 2 31 31 H 1.09000 * 110.48756 * 203.40865 * 9 8 6 32 32 H 1.08997 * 110.49114 * 80.75859 * 9 8 6 33 33 H 0.97002 * 119.99658 * 180.02562 * 15 14 12 34 34 H 1.09003 * 110.03745 * 119.28347 * 20 10 9 35 35 H 1.09002 * 110.03313 * 240.66567 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 0.9927 2.5130 0.1788 5 6 1.6354 2.2663 -1.1876 6 6 1.9954 -0.7660 1.1377 7 1 1.7129 -0.2951 2.0793 8 6 1.4872 -2.2292 1.0895 9 6 2.5547 -2.9899 1.9144 10 6 3.8850 -2.3093 1.5310 11 1 4.3763 -2.8697 0.7356 12 6 4.7871 -2.2241 2.7351 13 1 5.0845 -1.2598 3.1199 14 6 5.2330 -3.3772 3.3454 15 7 4.8706 -4.5515 2.8770 16 14 6.3518 -3.2716 4.8375 17 1 5.5279 -3.2326 6.0724 18 1 7.2421 -4.4597 4.8738 19 1 7.1751 -2.0387 4.7527 20 6 3.5293 -0.8958 1.0378 21 1 -0.3634 0.4031 0.9453 22 1 -0.3633 0.6171 -0.8218 23 1 -0.3634 -1.0202 -0.1235 24 1 2.9840 1.4955 0.4421 25 1 -0.0576 2.2465 0.2969 26 1 1.3215 3.3885 0.7389 27 1 2.3869 2.9794 -1.5265 28 1 1.0078 1.8375 -1.9688 29 1 1.4598 -2.5942 0.0628 30 1 0.5054 -2.3157 1.5550 31 1 2.5717 -4.0439 1.6368 32 1 2.3630 -2.8786 2.9816 33 1 5.1841 -5.3627 3.3066 34 1 4.0092 -0.1481 1.6693 35 1 3.8480 -0.7702 0.0030 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261119996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:39 Heat of formation + Delta-G solvation = 19.181791 kcal Electronic energy + Delta-G solvation = -14164.314596 eV Core-core repulsion = 11969.570844 eV Total energy + Delta-G solvation = -2194.743751 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.99401 -36.51148 -33.23522 -31.63790 -28.24012 -27.44902 -24.85040 -23.70802 -22.26136 -20.45448 -19.24177 -18.45680 -16.59347 -16.27060 -15.14556 -14.45873 -14.37884 -13.97621 -13.13488 -12.59395 -12.31009 -12.17771 -12.01039 -11.50254 -11.26457 -11.02284 -10.77043 -10.67858 -10.56103 -10.38790 -10.05531 -9.85202 -9.71155 -9.51556 -9.13247 -8.64858 -8.31558 -7.79959 -5.95249 -3.97486 3.33047 3.39875 3.42978 3.88572 4.28739 4.48307 4.97911 5.09852 5.19242 5.33071 5.40580 5.60686 5.67686 5.71755 5.81291 5.89445 5.96926 6.08157 6.12913 6.19325 6.41785 6.60953 6.69361 6.77644 6.88137 7.10823 7.28311 7.37985 7.44100 7.63249 7.80621 7.95195 8.09979 8.53489 9.05916 9.65873 11.14341 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.051212 B = 0.007536 C = 0.006939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.611753 B = 3714.770635 C = 4034.084177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.504 5.504 3 C 0.030 3.970 4 C -0.225 4.225 5 C -0.176 4.176 6 C 0.082 3.918 7 H 0.040 0.960 8 C -0.120 4.120 9 C -0.091 4.091 10 C 0.046 3.954 11 H 0.028 0.972 12 C -0.512 4.512 13 H 0.054 0.946 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.887 3.113 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.105 4.105 21 H 0.025 0.975 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.120 0.880 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.259 0.741 34 H 0.049 0.951 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.697 9.256 -4.763 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.226 5.226 3 C -0.080 4.080 4 C -0.264 4.264 5 C -0.214 4.214 6 C -0.025 4.025 7 H 0.058 0.942 8 C -0.158 4.158 9 C -0.129 4.129 10 C 0.028 3.972 11 H 0.046 0.954 12 C -0.550 4.550 13 H 0.072 0.928 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.715 3.285 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.143 4.143 21 H 0.043 0.957 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.138 0.862 25 H 0.114 0.886 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.504 8.798 -5.156 12.661 hybrid contribution 0.276 0.435 1.606 1.687 sum -7.228 9.234 -3.550 12.252 Atomic orbital electron populations 1.22443 0.88495 1.02096 0.99624 1.62053 1.06805 1.10141 1.43561 1.22703 0.98544 0.85183 1.01584 1.23528 0.99770 1.02054 1.01063 1.23009 1.03672 1.02873 0.91812 1.22643 0.97014 0.93496 0.89389 0.94207 1.22684 0.98237 0.94271 1.00602 1.22243 0.94309 0.98601 0.97791 1.19202 0.92903 0.89311 0.95829 0.95353 1.21320 1.29005 0.92182 1.12538 0.92818 1.24989 0.96276 0.95590 0.97216 1.69978 1.45206 0.97124 1.40550 0.86678 0.80844 0.77493 0.83469 1.20812 1.21297 1.20008 1.22337 0.91678 1.00587 0.99674 0.95660 0.92069 0.91171 0.86246 0.88590 0.89255 0.88858 0.88892 0.91863 0.93822 0.92414 0.93082 0.93170 0.93179 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 7.90 60.06 0.47 0.77 16 2 N -0.50 -8.22 4.80 -224.87 -1.08 -9.30 16 3 C 0.03 0.43 5.82 -67.71 -0.39 0.04 16 4 C -0.23 -2.75 9.51 -26.73 -0.25 -3.01 16 5 C -0.18 -2.14 9.97 -26.73 -0.27 -2.41 16 6 C 0.08 1.54 2.58 -66.01 -0.17 1.37 16 7 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 8 C -0.12 -2.32 5.18 -24.70 -0.13 -2.45 16 9 C -0.09 -2.15 5.44 -25.07 -0.14 -2.29 16 10 C 0.05 1.17 2.82 -90.65 -0.26 0.92 16 11 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 12 C -0.51 -14.21 8.36 -34.44 -0.29 -14.50 16 13 H 0.05 1.47 7.33 -52.49 -0.38 1.09 16 14 C 0.06 1.70 5.33 -17.82 -0.09 1.61 16 15 N -0.89 -25.89 12.43 55.43 0.69 -25.20 16 16 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.10 -2.23 4.89 -25.61 -0.13 -2.36 16 21 H 0.02 0.34 7.44 -51.93 -0.39 -0.05 16 22 H 0.06 0.74 6.42 -51.93 -0.33 0.41 16 23 H 0.07 0.96 7.14 -51.93 -0.37 0.59 16 24 H 0.12 1.84 7.09 -51.93 -0.37 1.47 16 25 H 0.10 1.13 5.91 -51.93 -0.31 0.83 16 26 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.09 1.12 7.57 -51.93 -0.39 0.72 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.04 0.77 8.03 -51.93 -0.42 0.35 16 31 H 0.06 1.45 7.97 -51.93 -0.41 1.03 16 32 H 0.05 1.28 7.85 -51.93 -0.41 0.87 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.05 1.07 7.26 -51.93 -0.38 0.69 16 35 H 0.05 1.09 8.02 -51.93 -0.42 0.67 16 LS Contribution 272.93 15.07 4.11 4.11 Total: -1.00 -28.33 272.93 -8.76 -37.09 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.82 Total: -0.88 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -1.64 Total: -22.31 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: -0.39 Total: -34.50 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.33 -8.76 -37.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261119996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.274 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds