Wall clock time and date at job start Mon Mar 30 2020 03:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46894 * 111.00307 * 2 1 4 4 C 1.53000 * 117.49770 * 7.57116 * 3 2 1 5 5 C 1.53001 * 60.00241 * 252.51055 * 4 3 2 6 6 C 1.46910 * 110.99784 * 123.95131 * 2 1 3 7 7 H 1.09001 * 110.53901 * 296.11988 * 6 2 1 8 8 C 1.54967 * 110.52884 * 58.74708 * 6 2 1 9 9 C 1.54884 * 102.77743 * 156.56974 * 8 6 2 10 10 C 1.54267 * 104.19605 * 322.08139 * 9 8 6 11 11 H 1.08998 * 110.07594 * 264.30550 * 10 9 8 12 12 C 1.50698 * 110.03265 * 142.89212 * 10 9 8 13 13 H 1.07998 * 120.00387 * 242.83031 * 12 10 9 14 14 C 1.37874 * 119.99846 * 62.84051 * 12 10 9 15 15 N 1.31519 * 119.99908 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00159 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47532 * 89.99747 * 16 14 12 18 18 H 1.48509 * 109.47291 * 209.99725 * 16 14 12 19 19 H 1.48497 * 109.47282 * 329.99352 * 16 14 12 20 20 C 1.53876 * 106.59687 * 23.61242 * 10 9 8 21 21 H 1.09000 * 109.47431 * 293.09757 * 1 2 3 22 22 H 1.09004 * 109.46608 * 53.09857 * 1 2 3 23 23 H 1.09000 * 109.47250 * 173.09775 * 1 2 3 24 24 H 1.09001 * 115.55376 * 153.28321 * 3 2 1 25 25 H 1.08998 * 117.50061 * 0.02562 * 4 3 2 26 26 H 1.09003 * 117.49507 * 145.02462 * 4 3 2 27 27 H 1.09002 * 117.50197 * 252.51488 * 5 4 3 28 28 H 1.08997 * 117.49637 * 107.48586 * 5 4 3 29 29 H 1.08995 * 110.72017 * 38.25155 * 8 6 2 30 30 H 1.09007 * 110.92063 * 274.97428 * 8 6 2 31 31 H 1.09000 * 110.48756 * 203.40865 * 9 8 6 32 32 H 1.08997 * 110.49114 * 80.75859 * 9 8 6 33 33 H 0.97002 * 119.99658 * 180.02562 * 15 14 12 34 34 H 1.09003 * 110.03745 * 119.28347 * 20 10 9 35 35 H 1.09002 * 110.03313 * 240.66567 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 0.9927 2.5130 0.1788 5 6 1.6354 2.2663 -1.1876 6 6 1.9954 -0.7660 1.1377 7 1 1.7129 -0.2951 2.0793 8 6 1.4872 -2.2292 1.0895 9 6 2.5547 -2.9899 1.9144 10 6 3.8850 -2.3093 1.5310 11 1 4.3763 -2.8697 0.7356 12 6 4.7871 -2.2241 2.7351 13 1 5.0845 -1.2598 3.1199 14 6 5.2330 -3.3772 3.3454 15 7 4.8706 -4.5515 2.8770 16 14 6.3518 -3.2716 4.8375 17 1 5.5279 -3.2326 6.0724 18 1 7.2421 -4.4597 4.8738 19 1 7.1751 -2.0387 4.7527 20 6 3.5293 -0.8958 1.0378 21 1 -0.3634 0.4031 0.9453 22 1 -0.3633 0.6171 -0.8218 23 1 -0.3634 -1.0202 -0.1235 24 1 2.9840 1.4955 0.4421 25 1 -0.0576 2.2465 0.2969 26 1 1.3215 3.3885 0.7389 27 1 2.3869 2.9794 -1.5265 28 1 1.0078 1.8375 -1.9688 29 1 1.4598 -2.5942 0.0628 30 1 0.5054 -2.3157 1.5550 31 1 2.5717 -4.0439 1.6368 32 1 2.3630 -2.8786 2.9816 33 1 5.1841 -5.3627 3.3066 34 1 4.0092 -0.1481 1.6693 35 1 3.8480 -0.7702 0.0030 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261119996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:39 Heat of formation + Delta-G solvation = 2.772411 kcal Electronic energy + Delta-G solvation = -14165.026160 eV Core-core repulsion = 11969.570844 eV Total energy + Delta-G solvation = -2195.455315 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.30413 -38.04776 -34.92759 -33.34555 -29.98623 -29.09239 -26.28457 -25.61306 -23.20499 -21.77699 -21.00341 -20.02044 -18.51648 -17.66210 -16.59462 -16.27772 -15.93556 -15.27276 -14.69112 -14.16868 -14.06953 -13.66558 -13.29101 -12.99644 -12.81050 -12.65336 -12.35090 -12.24118 -12.07347 -11.87601 -11.59039 -11.47544 -11.31335 -11.09538 -11.05297 -10.73114 -10.45409 -9.00498 -8.11000 -6.20685 1.40484 1.40927 1.51340 2.43639 2.77754 3.17423 3.19593 3.82610 4.03000 4.04134 4.15575 4.23459 4.34945 4.41624 4.63433 4.73550 4.78311 4.86710 4.92445 4.96710 4.97982 5.05449 5.14942 5.21229 5.27548 5.30063 5.43468 5.53107 5.66050 5.93680 5.97795 6.23459 6.25375 6.42311 6.91220 7.46318 8.98115 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.051212 B = 0.007536 C = 0.006939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.611753 B = 3714.770635 C = 4034.084177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.512 5.512 3 C -0.004 4.004 4 C -0.209 4.209 5 C -0.161 4.161 6 C 0.095 3.905 7 H 0.035 0.965 8 C -0.105 4.105 9 C -0.083 4.083 10 C 0.038 3.962 11 H -0.007 1.007 12 C -0.532 4.532 13 H 0.052 0.948 14 C 0.010 3.990 15 N -0.920 5.920 16 Si 0.952 3.048 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.268 1.268 20 C -0.093 4.093 21 H 0.030 0.970 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.260 0.740 34 H 0.044 0.956 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.707 10.866 -4.827 14.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.234 5.234 3 C -0.113 4.113 4 C -0.248 4.248 5 C -0.198 4.198 6 C -0.013 4.013 7 H 0.053 0.947 8 C -0.143 4.143 9 C -0.122 4.122 10 C 0.019 3.981 11 H 0.011 0.989 12 C -0.570 4.570 13 H 0.070 0.930 14 C -0.189 4.189 15 N -0.560 5.560 16 Si 0.778 3.222 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.193 1.193 20 C -0.131 4.131 21 H 0.049 0.951 22 H 0.099 0.901 23 H 0.090 0.910 24 H 0.123 0.877 25 H 0.122 0.878 26 H 0.118 0.882 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.521 10.430 -5.229 14.448 hybrid contribution 0.603 -0.049 1.583 1.694 sum -7.918 10.381 -3.646 13.556 Atomic orbital electron populations 1.22524 0.86717 1.02768 1.00715 1.62000 1.08419 1.11175 1.41815 1.22728 0.98858 0.85152 1.04556 1.23576 0.99492 1.00826 1.00938 1.23087 1.03597 1.01621 0.91531 1.22329 0.94900 0.93575 0.90462 0.94670 1.22532 0.97807 0.93922 1.00056 1.22016 0.95288 0.97654 0.97248 1.19212 0.93224 0.91520 0.94175 0.98906 1.21675 1.29636 0.92248 1.13419 0.93002 1.25783 0.97747 0.95228 1.00095 1.70106 1.46263 0.97707 1.41881 0.85642 0.78966 0.77662 0.79924 1.20055 1.20898 1.19285 1.22121 0.94029 0.97697 0.99251 0.95139 0.90067 0.91045 0.87703 0.87778 0.88207 0.87510 0.88352 0.91438 0.91399 0.94805 0.94977 0.93120 0.93688 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 7.90 127.69 1.01 1.51 16 2 N -0.51 -15.72 4.80 -865.34 -4.15 -19.87 16 3 C 0.00 -0.10 5.82 44.92 0.26 0.16 16 4 C -0.21 -4.46 9.51 30.59 0.29 -4.17 16 5 C -0.16 -3.43 9.97 30.60 0.31 -3.12 16 6 C 0.10 3.50 2.58 46.01 0.12 3.62 16 7 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 8 C -0.11 -3.99 5.18 31.91 0.17 -3.83 16 9 C -0.08 -4.04 5.44 31.67 0.17 -3.87 16 10 C 0.04 1.96 2.82 -10.82 -0.03 1.93 16 11 H -0.01 -0.43 8.14 -2.39 -0.02 -0.44 16 12 C -0.53 -30.18 8.36 25.60 0.21 -29.96 16 13 H 0.05 2.89 7.33 -2.91 -0.02 2.86 16 14 C 0.01 0.57 5.33 84.65 0.45 1.02 16 15 N -0.92 -54.85 12.43 21.45 0.27 -54.59 16 16 Si 0.95 44.48 29.54 68.60 2.03 46.51 16 17 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 C -0.09 -4.00 4.89 31.32 0.15 -3.85 16 21 H 0.03 0.72 7.44 -2.39 -0.02 0.70 16 22 H 0.08 1.68 6.42 -2.38 -0.02 1.66 16 23 H 0.07 1.74 7.14 -2.39 -0.02 1.72 16 24 H 0.11 3.14 7.09 -2.39 -0.02 3.13 16 25 H 0.10 2.06 5.91 -2.39 -0.01 2.05 16 26 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.10 2.02 7.57 -2.39 -0.02 2.00 16 29 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.07 2.25 8.03 -2.38 -0.02 2.24 16 31 H 0.03 1.75 7.97 -2.39 -0.02 1.73 16 32 H 0.03 1.63 7.85 -2.39 -0.02 1.61 16 33 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 34 H 0.04 1.95 7.26 -2.39 -0.02 1.93 16 35 H 0.05 2.24 8.02 -2.39 -0.02 2.22 16 Total: -1.00 -61.24 272.93 2.29 -58.95 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.04 Total: 9.55 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 3.11 Total: -40.56 kcal Atomic # 7 Polarization: -70.57 SS G_CDS: -3.88 Total: -74.45 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -61.24 2.29 -58.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261119996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.719 kcal (2) G-P(sol) polarization free energy of solvation -61.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds