Wall clock time and date at job start Mon Mar 30 2020 03:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46905 * 111.00014 * 2 1 4 4 C 1.53002 * 117.49993 * 235.20849 * 3 2 1 5 5 C 1.53000 * 117.49884 * 303.86569 * 3 2 1 6 6 C 1.46905 * 111.00398 * 123.95011 * 2 1 3 7 7 H 1.09001 * 110.67380 * 292.81791 * 6 2 1 8 8 C 1.54887 * 110.75916 * 169.37272 * 6 2 1 9 9 C 1.54260 * 104.19451 * 203.74394 * 8 6 2 10 10 C 1.53875 * 106.59918 * 23.61638 * 9 8 6 11 11 H 1.09007 * 110.02636 * 240.71002 * 10 9 8 12 12 C 1.50698 * 110.03213 * 119.28415 * 10 9 8 13 13 H 1.08004 * 119.99831 * 242.82843 * 12 10 9 14 14 C 1.37877 * 120.00287 * 62.83187 * 12 10 9 15 15 N 1.31507 * 119.99966 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 120.00043 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46932 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47262 * 119.99755 * 16 14 12 19 19 H 1.48509 * 109.47041 * 240.00213 * 16 14 12 20 20 C 1.54263 * 106.59848 * 359.97438 * 10 9 8 21 21 H 1.08997 * 109.47077 * 59.99910 * 1 2 3 22 22 H 1.08996 * 109.47290 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46929 * 299.99967 * 1 2 3 24 24 H 1.09002 * 115.55023 * 89.53538 * 3 2 1 25 25 H 1.09000 * 117.49996 * 215.00488 * 4 3 2 26 26 H 1.08999 * 117.49664 * 0.02562 * 4 3 2 27 27 H 1.09008 * 117.49673 * 359.97438 * 5 3 2 28 28 H 1.08999 * 117.49942 * 144.97141 * 5 3 2 29 29 H 1.08994 * 110.48801 * 322.42704 * 8 6 2 30 30 H 1.09008 * 110.48268 * 85.06655 * 8 6 2 31 31 H 1.09003 * 110.03332 * 264.32479 * 9 8 6 32 32 H 1.09009 * 110.07094 * 142.92002 * 9 8 6 33 33 H 0.97003 * 120.00437 * 180.02562 * 15 14 12 34 34 H 1.09000 * 110.48659 * 217.71686 * 20 10 9 35 35 H 1.09001 * 110.48526 * 95.07076 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 2.9715 1.7535 -1.1145 5 6 1.5425 2.3020 -1.1269 6 6 1.9955 -0.7659 1.1376 7 1 1.7642 -0.2659 2.0782 8 6 3.5212 -0.9887 0.9904 9 6 3.8037 -2.2449 1.8399 10 6 2.4786 -3.0219 1.9300 11 1 2.1667 -3.1086 2.9709 12 6 2.6410 -4.3917 1.3233 13 1 2.0637 -4.6691 0.4537 14 6 3.5266 -5.2910 1.8784 15 7 4.2298 -4.9532 2.9371 16 14 3.7274 -6.9893 1.1267 17 1 2.8287 -7.1199 -0.0482 18 1 5.1362 -7.1766 0.6962 19 1 3.3763 -8.0215 2.1350 20 6 1.4368 -2.2103 1.1326 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 2.1564 1.8132 0.9834 25 1 3.7748 2.4465 -0.8644 26 1 3.2227 0.9874 -1.8480 27 1 0.8543 1.8964 -1.8686 28 1 1.4052 3.3559 -0.8848 29 1 3.7817 -1.1671 -0.0528 30 1 4.0712 -0.1324 1.3809 31 1 4.1350 -1.9547 2.8370 32 1 4.5646 -2.8591 1.3581 33 1 4.8531 -5.5857 3.3274 34 1 0.4659 -2.2459 1.6267 35 1 1.3606 -2.5858 0.1121 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261119999.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:42 Heat of formation + Delta-G solvation = 16.271227 kcal Electronic energy + Delta-G solvation = -14155.658485 eV Core-core repulsion = 11960.788523 eV Total energy + Delta-G solvation = -2194.869963 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.69056 -36.39202 -33.42479 -31.81899 -28.32627 -26.79842 -25.39321 -23.26461 -22.12997 -20.60645 -19.24206 -18.73565 -16.49854 -15.62142 -15.10596 -14.60391 -14.45459 -14.07626 -13.24348 -12.66109 -12.46304 -12.14823 -11.77432 -11.59022 -11.25291 -10.99000 -10.71619 -10.54335 -10.38130 -10.29260 -9.90161 -9.86410 -9.77140 -9.52111 -9.07498 -8.60012 -8.29711 -7.93089 -5.94003 -3.96214 3.33877 3.41832 3.46202 3.94038 4.13114 4.50435 5.06155 5.11328 5.31347 5.37662 5.44440 5.65960 5.70223 5.75856 5.85096 5.89817 6.03636 6.07547 6.18450 6.31010 6.44013 6.57777 6.72069 6.86796 6.88091 7.09589 7.28080 7.40975 7.51467 7.65784 7.81202 8.00758 8.07442 8.56121 9.07556 9.67162 11.15589 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.054174 B = 0.007335 C = 0.007112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.728447 B = 3816.552701 C = 3935.798413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.508 5.508 3 C 0.013 3.987 4 C -0.163 4.163 5 C -0.182 4.182 6 C 0.078 3.922 7 H 0.036 0.964 8 C -0.108 4.108 9 C -0.091 4.091 10 C 0.045 3.955 11 H 0.025 0.975 12 C -0.507 4.507 13 H 0.055 0.945 14 C 0.059 3.941 15 N -0.891 5.891 16 Si 0.887 3.113 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.104 4.104 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.019 0.981 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.258 0.742 34 H 0.039 0.961 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 11.501 -5.095 13.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.232 5.232 3 C -0.096 4.096 4 C -0.201 4.201 5 C -0.219 4.219 6 C -0.029 4.029 7 H 0.054 0.946 8 C -0.146 4.146 9 C -0.130 4.130 10 C 0.026 3.974 11 H 0.043 0.957 12 C -0.545 4.545 13 H 0.073 0.927 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.715 3.285 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.141 4.141 21 H 0.078 0.922 22 H 0.092 0.908 23 H 0.037 0.963 24 H 0.101 0.899 25 H 0.108 0.892 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.867 11.186 -5.396 13.007 hybrid contribution -0.051 -0.530 0.475 0.713 sum -3.918 10.656 -4.920 12.374 Atomic orbital electron populations 1.22326 0.87912 1.02173 0.99634 1.61924 1.07009 1.09976 1.44248 1.22375 1.03925 0.90021 0.93306 1.23023 0.92203 1.02746 1.02080 1.23040 0.98828 0.98165 1.01914 1.22791 0.96539 0.94462 0.89141 0.94563 1.22382 0.93110 0.98225 1.00875 1.22035 1.00707 0.93455 0.96799 1.19220 0.89860 0.93184 0.95087 0.95732 1.21299 1.22564 0.97737 1.12942 0.92665 1.24986 0.95959 0.98277 0.94991 1.69995 1.26014 1.35277 1.21710 0.86610 0.77840 0.84763 0.79238 1.19809 1.21120 1.21173 1.22538 0.98145 0.92210 1.01253 0.92152 0.90841 0.96261 0.89909 0.89229 0.88208 0.88628 0.89254 0.91794 0.94173 0.94637 0.91797 0.93248 0.94201 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.15 60.06 0.55 0.94 16 2 N -0.51 -8.34 4.80 -224.54 -1.08 -9.42 16 3 C 0.01 0.18 4.75 -67.71 -0.32 -0.14 16 4 C -0.16 -2.06 10.46 -26.69 -0.28 -2.34 16 5 C -0.18 -2.11 9.77 -26.70 -0.26 -2.37 16 6 C 0.08 1.47 2.55 -65.73 -0.17 1.30 16 7 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 8 C -0.11 -2.16 5.90 -25.08 -0.15 -2.31 16 9 C -0.09 -2.19 5.60 -25.62 -0.14 -2.33 16 10 C 0.05 1.15 2.82 -90.66 -0.26 0.90 16 11 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 12 C -0.51 -14.15 8.32 -34.44 -0.29 -14.44 16 13 H 0.06 1.53 7.54 -52.48 -0.40 1.14 16 14 C 0.06 1.66 5.09 -17.82 -0.09 1.57 16 15 N -0.89 -26.07 12.44 55.43 0.69 -25.38 16 16 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 C -0.10 -2.20 4.48 -25.08 -0.11 -2.32 16 21 H 0.06 0.76 6.90 -51.93 -0.36 0.40 16 22 H 0.07 1.10 6.73 -51.93 -0.35 0.75 16 23 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 25 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.10 1.10 7.28 -51.92 -0.38 0.73 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.69 7.26 -51.92 -0.38 1.31 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.04 0.80 7.89 -51.93 -0.41 0.39 16 35 H 0.07 1.47 7.67 -51.93 -0.40 1.07 16 LS Contribution 277.95 15.07 4.19 4.19 Total: -1.00 -28.61 277.95 -8.76 -37.37 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -6.03 Total: -1.84 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -1.52 Total: -21.53 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: -0.39 Total: -34.79 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.61 -8.76 -37.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261119999.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.643 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds