Wall clock time and date at job start Mon Mar 30 2020 02:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46900 * 109.47273 * 2 1 4 4 C 1.46901 * 110.99907 * 174.91229 * 3 2 1 5 5 C 1.50707 * 108.81271 * 304.98163 * 4 3 2 6 6 H 1.08000 * 119.99841 * 123.84203 * 5 4 3 7 7 C 1.37876 * 119.99841 * 303.56125 * 5 4 3 8 8 N 1.31515 * 120.00454 * 355.41735 * 7 5 4 9 9 Si 1.86802 * 119.99490 * 175.41721 * 7 5 4 10 10 H 1.48503 * 109.46962 * 60.00351 * 9 7 5 11 11 H 1.48501 * 109.46801 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47458 * 300.00160 * 9 7 5 13 13 C 1.51407 * 108.75796 * 186.55717 * 4 3 2 14 14 C 1.51277 * 112.84273 * 286.10695 * 13 4 3 15 15 C 1.51423 * 112.84239 * 296.97684 * 14 13 4 16 16 C 1.52138 * 112.26667 * 46.49300 * 15 14 13 17 17 H 1.08999 * 114.95591 * 130.37120 * 16 15 14 18 18 C 1.53684 * 116.28930 * 272.28925 * 16 15 14 19 19 C 1.51440 * 108.84099 * 63.45874 * 4 3 2 20 20 H 1.09003 * 114.52745 * 318.28049 * 19 4 3 21 21 H 1.08996 * 109.47222 * 60.00089 * 1 2 3 22 22 H 1.08997 * 109.47317 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47297 * 299.99649 * 1 2 3 24 24 H 1.08996 * 109.46960 * 239.99711 * 2 1 3 25 25 H 1.09004 * 109.46638 * 120.00097 * 2 1 3 26 26 H 1.00899 * 110.99762 * 298.86650 * 3 2 1 27 27 H 0.96995 * 120.00044 * 179.97438 * 8 7 5 28 28 H 1.08996 * 108.80825 * 46.96849 * 13 4 3 29 29 H 1.08996 * 108.81199 * 165.23563 * 13 4 3 30 30 H 1.09003 * 108.80950 * 176.11616 * 14 13 4 31 31 H 1.08992 * 108.72440 * 57.78877 * 14 13 4 32 32 H 1.08996 * 108.92199 * 285.77896 * 15 14 13 33 33 H 1.08997 * 108.92264 * 167.20617 * 15 14 13 34 34 H 1.09005 * 117.53854 * 4.36524 * 18 16 15 35 35 H 1.08995 * 117.60486 * 219.07648 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4831 1.4259 0.1216 5 6 3.8902 0.6568 1.3521 6 1 4.5897 -0.1620 1.2702 7 6 3.3741 1.0023 2.5831 8 7 2.5979 2.0577 2.6981 9 14 3.7776 -0.0289 4.0875 10 1 5.2468 -0.0357 4.3035 11 1 3.1053 0.5494 5.2787 12 1 3.3018 -1.4197 3.8765 13 6 3.9184 2.8674 0.2797 14 6 3.8255 3.6537 -1.0093 15 6 4.7435 3.1219 -2.0897 16 6 4.6626 1.6084 -2.2214 17 1 4.5188 1.2423 -3.2379 18 6 5.6000 0.7952 -1.3148 19 6 4.0937 0.7617 -1.0947 20 1 3.5892 -0.1505 -1.4133 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5139 0.8900 26 1 1.7115 1.8774 -0.8249 27 1 2.2346 2.3004 3.5640 28 1 3.2870 3.3450 1.0289 29 1 4.9505 2.8865 0.6294 30 1 4.0860 4.6926 -0.8068 31 1 2.7978 3.6137 -1.3702 32 1 5.7695 3.4016 -1.8509 33 1 4.4680 3.5747 -3.0421 34 1 6.2030 1.3442 -0.5914 35 1 6.0673 -0.0934 -1.7389 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261126615.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:06 Heat of formation + Delta-G solvation = 19.058428 kcal Electronic energy + Delta-G solvation = -14941.998568 eV Core-core repulsion = 12747.249467 eV Total energy + Delta-G solvation = -2194.749101 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.03461 -34.84409 -32.48732 -31.91140 -29.90305 -26.79087 -25.18933 -22.47391 -21.78183 -20.63110 -20.12817 -17.02147 -15.90043 -15.47932 -14.68312 -14.24934 -13.57351 -13.41557 -13.06104 -12.47353 -12.41455 -11.96580 -11.82311 -11.14659 -10.89552 -10.78691 -10.66044 -10.44121 -10.33781 -10.08265 -9.84441 -9.67303 -9.49968 -9.05819 -8.83929 -8.52590 -8.17304 -6.69789 -5.76352 -3.89361 3.37212 3.42529 3.45531 4.47869 4.65501 5.34540 5.45829 5.63672 5.70271 5.82281 5.90193 6.06192 6.10792 6.25508 6.32710 6.35992 6.44300 6.52193 6.59943 6.65590 6.70400 6.74146 6.91520 6.99475 7.07886 7.22169 7.27382 7.46968 7.68291 7.95931 8.09666 8.45374 8.74722 8.99691 9.30353 9.75415 11.22898 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.027440 B = 0.014088 C = 0.012005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.164385 B = 1986.986331 C = 2331.769643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.069 3.931 3 N -0.643 5.643 4 C 0.276 3.724 5 C -0.521 4.521 6 H 0.051 0.949 7 C 0.087 3.913 8 N -0.843 5.843 9 Si 0.874 3.126 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.280 1.280 13 C -0.094 4.094 14 C -0.119 4.119 15 C -0.079 4.079 16 C -0.170 4.170 17 H 0.081 0.919 18 C -0.173 4.173 19 C -0.136 4.136 20 H 0.078 0.922 21 H 0.036 0.964 22 H 0.039 0.961 23 H 0.058 0.942 24 H -0.002 1.002 25 H 0.083 0.917 26 H 0.297 0.703 27 H 0.253 0.747 28 H 0.100 0.900 29 H 0.037 0.963 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.601 -0.028 -6.462 6.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.061 4.061 3 N -0.270 5.270 4 C 0.187 3.813 5 C -0.560 4.560 6 H 0.069 0.931 7 C -0.119 4.119 8 N -0.478 5.478 9 Si 0.702 3.298 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.205 1.205 13 C -0.132 4.132 14 C -0.157 4.157 15 C -0.117 4.117 16 C -0.188 4.188 17 H 0.099 0.901 18 C -0.211 4.211 19 C -0.156 4.156 20 H 0.097 0.903 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.077 0.923 24 H 0.016 0.984 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.358 0.198 -5.628 5.642 hybrid contribution 0.540 -1.046 -0.157 1.187 sum 0.898 -0.848 -5.784 5.915 Atomic orbital electron populations 1.21759 0.97781 0.99426 1.01154 1.21670 0.92550 0.92229 0.99670 1.60917 1.12663 1.12212 1.41249 1.17364 0.83071 0.91842 0.89041 1.20789 1.27482 1.16868 0.90880 0.93105 1.24852 0.94623 0.94572 0.97859 1.69998 1.31101 1.23683 1.23031 0.86990 0.78364 0.81082 0.83372 1.20588 1.21499 1.20530 1.20863 1.00848 0.96401 0.95088 1.20988 0.98576 0.98689 0.97404 1.20526 0.99653 0.93163 0.98334 1.22045 1.07741 0.93972 0.95021 0.90090 1.22817 0.94283 1.01334 1.02643 1.22750 0.95161 0.99398 0.98289 0.90339 0.94457 0.94204 0.92289 0.98392 0.89911 0.88766 0.93632 0.88188 0.94461 0.93898 0.93293 0.93001 0.93433 0.88920 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 10.22 37.16 0.38 -2.28 16 2 C 0.07 1.48 5.74 -3.82 -0.02 1.45 16 3 N -0.64 -14.70 5.16 -102.77 -0.53 -15.23 16 4 C 0.28 6.44 0.28 -134.34 -0.04 6.40 16 5 C -0.52 -13.68 6.15 -34.44 -0.21 -13.89 16 6 H 0.05 1.37 7.73 -52.49 -0.41 0.97 16 7 C 0.09 2.32 4.95 -17.82 -0.09 2.23 16 8 N -0.84 -23.09 10.79 55.43 0.60 -22.49 16 9 Si 0.87 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C -0.09 -2.16 4.02 -28.40 -0.11 -2.27 16 14 C -0.12 -2.28 5.67 -28.40 -0.16 -2.44 16 15 C -0.08 -1.37 5.84 -27.97 -0.16 -1.54 16 16 C -0.17 -3.09 6.19 -91.22 -0.56 -3.66 16 17 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 18 C -0.17 -3.32 9.64 -26.75 -0.26 -3.58 16 19 C -0.14 -2.85 4.37 -92.30 -0.40 -3.25 16 20 H 0.08 1.67 6.21 -51.93 -0.32 1.35 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.00 -0.04 6.36 -51.93 -0.33 -0.37 16 25 H 0.08 2.02 6.52 -51.93 -0.34 1.68 16 26 H 0.30 6.40 7.74 -39.29 -0.30 6.10 16 27 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.10 2.60 6.32 -51.93 -0.33 2.27 16 29 H 0.04 0.89 7.76 -51.93 -0.40 0.49 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.93 7.19 -51.93 -0.37 0.56 16 32 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.87 7.87 -51.93 -0.41 1.46 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 266.96 15.07 4.02 4.02 Total: -1.00 -26.44 266.96 -8.30 -34.75 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.73 Total: 5.84 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -1.64 Total: -22.81 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.07 Total: -37.72 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -26.44 -8.30 -34.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126615.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.804 kcal (2) G-P(sol) polarization free energy of solvation -26.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds